Wall clock time and date at job start Mon Mar 30 2020 05:43:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31522 * 1 3 3 Si 1.86794 * 120.00032 * 2 1 4 4 H 1.48498 * 109.47044 * 95.01286 * 3 2 1 5 5 H 1.48501 * 109.47166 * 215.01391 * 3 2 1 6 6 H 1.48504 * 109.47160 * 335.01275 * 3 2 1 7 7 C 1.37881 * 119.99750 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99471 * 172.02910 * 7 2 1 9 9 C 1.50696 * 120.00098 * 352.03208 * 7 2 1 10 10 C 1.53001 * 115.54677 * 183.96784 * 9 7 2 11 11 N 1.46896 * 109.47329 * 325.58236 * 10 9 7 12 12 C 1.47541 * 110.99978 * 91.52740 * 11 10 9 13 13 C 1.53556 * 87.99218 * 138.42435 * 12 11 10 14 14 C 1.47162 * 111.00050 * 187.40707 * 11 10 9 15 15 C 1.52838 * 113.47183 * 106.67847 * 14 11 10 16 16 C 1.53123 * 109.22376 * 172.71396 * 15 14 11 17 17 C 1.52964 * 109.44396 * 58.00107 * 16 15 14 18 18 C 1.52970 * 109.68325 * 298.37090 * 17 16 15 19 19 C 1.52840 * 113.46571 * 336.36008 * 14 11 10 20 20 C 1.52999 * 117.50230 * 38.26113 * 9 7 2 21 21 C 1.52997 * 117.49785 * 329.63817 * 9 7 2 22 22 H 0.96999 * 120.00026 * 359.97438 * 1 2 3 23 23 H 1.09001 * 109.46719 * 85.58577 * 10 9 7 24 24 H 1.09006 * 109.47081 * 205.57716 * 10 9 7 25 25 H 1.08998 * 113.46226 * 253.20855 * 12 11 10 26 26 H 1.08998 * 113.46248 * 23.58502 * 12 11 10 27 27 H 1.09004 * 114.18005 * 87.84434 * 13 12 11 28 28 H 1.08996 * 114.18242 * 220.39719 * 13 12 11 29 29 H 1.08998 * 109.51519 * 292.64223 * 15 14 11 30 30 H 1.09002 * 109.51308 * 52.79073 * 15 14 11 31 31 H 1.08999 * 109.47455 * 298.00660 * 16 15 14 32 32 H 1.09007 * 109.47671 * 177.99591 * 16 15 14 33 33 H 1.09010 * 109.43043 * 178.31291 * 17 16 15 34 34 H 1.08998 * 109.44133 * 58.44369 * 17 16 15 35 35 H 1.08994 * 109.48151 * 301.63899 * 18 17 16 36 36 H 1.09003 * 109.48095 * 181.62078 * 18 17 16 37 37 H 1.08994 * 109.51698 * 307.21221 * 19 14 11 38 38 H 1.09002 * 109.51296 * 67.36941 * 19 14 11 39 39 H 1.09001 * 117.49596 * 0.02562 * 20 9 7 40 40 H 1.08998 * 117.50235 * 145.02063 * 20 9 7 41 41 H 1.09009 * 117.49844 * 214.97895 * 21 9 7 42 42 H 1.09001 * 117.50259 * 0.02562 * 21 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.6026 1.9852 1.3947 5 1 3.4898 1.4730 -0.8033 6 1 1.3977 2.6809 -0.5914 7 6 2.0046 -1.1941 -0.0005 8 1 3.0767 -1.1985 -0.1302 9 6 1.2620 -2.4929 0.1798 10 6 2.1351 -3.7469 0.2576 11 7 3.3032 -3.5854 -0.6184 12 6 4.4412 -3.0045 0.1194 13 6 5.3537 -3.9996 -0.6122 14 6 4.0734 -4.8363 -0.7064 15 6 3.9153 -5.5557 -2.0456 16 6 4.8891 -6.7360 -2.1020 17 6 4.6138 -7.6798 -0.9301 18 6 4.8401 -6.9414 0.3903 19 6 3.8653 -5.7646 0.4898 20 6 -0.1054 -2.6244 -0.4939 21 6 -0.0130 -2.4662 1.0251 22 1 -0.4850 0.8400 0.0004 23 1 2.4688 -3.8941 1.2848 24 1 1.5566 -4.6130 -0.0640 25 1 4.6393 -1.9640 -0.1376 26 1 4.3909 -3.1706 1.1955 27 1 5.7250 -3.6419 -1.5726 28 1 6.1312 -4.4363 0.0144 29 1 2.8933 -5.9219 -2.1438 30 1 4.1344 -4.8637 -2.8587 31 1 5.9124 -6.3661 -2.0381 32 1 4.7549 -7.2734 -3.0408 33 1 5.2872 -8.5351 -0.9874 34 1 3.5819 -8.0275 -0.9791 35 1 5.8638 -6.5693 0.4279 36 1 4.6709 -7.6247 1.2225 37 1 4.0502 -5.2158 1.4132 38 1 2.8415 -6.1387 0.4866 39 1 -0.4677 -1.7715 -1.0679 40 1 -0.3832 -3.6043 -0.8819 41 1 -0.2300 -3.3423 1.6364 42 1 -0.3149 -1.5092 1.4505 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000707348217.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:43:28 Heat of formation + Delta-G solvation = 56.393339 kcal Electronic energy + Delta-G solvation = -19509.688250 eV Core-core repulsion = 16877.256734 eV Total energy + Delta-G solvation = -2632.431516 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 249.179 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.78245 -36.66602 -35.58678 -31.59665 -30.80719 -29.37910 -28.51546 -25.58830 -23.81038 -22.87342 -22.27199 -20.60773 -20.40207 -18.85070 -17.53757 -16.15050 -15.56633 -15.30043 -14.73872 -14.40433 -14.28913 -13.67740 -13.36160 -13.09267 -12.60049 -12.38851 -12.24238 -11.91777 -11.60171 -11.22204 -11.08684 -10.98817 -10.94262 -10.70618 -10.55777 -10.51708 -10.32172 -9.98299 -9.95025 -9.84840 -9.45650 -9.27231 -8.68305 -8.19903 -8.01980 -7.78700 -5.84622 -3.85379 3.34251 3.41055 3.43458 4.43800 4.48938 4.78798 4.84428 5.00655 5.10555 5.21780 5.29299 5.41655 5.49059 5.61446 5.68380 5.76026 5.76501 5.85352 5.94204 6.02341 6.07972 6.13303 6.16220 6.23491 6.27757 6.30880 6.37274 6.42635 6.52683 6.54851 6.61553 6.73390 6.89385 7.09590 7.16165 7.30898 7.49113 7.78597 7.97481 8.17109 8.33468 8.67073 9.10693 9.67525 11.12597 Molecular weight = 249.18amu Principal moments of inertia in cm(-1) A = 0.031263 B = 0.006577 C = 0.005974 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 895.405864 B = 4256.033425 C = 4685.593654 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.883 5.883 2 C 0.053 3.947 3 Si 0.890 3.110 4 H -0.283 1.283 5 H -0.275 1.275 6 H -0.289 1.289 7 C -0.460 4.460 8 H 0.072 0.928 9 C 0.028 3.972 10 C 0.070 3.930 11 N -0.434 5.434 12 C 0.011 3.989 13 C -0.142 4.142 14 C 0.051 3.949 15 C -0.091 4.091 16 C -0.115 4.115 17 C -0.118 4.118 18 C -0.113 4.113 19 C -0.122 4.122 20 C -0.185 4.185 21 C -0.195 4.195 22 H 0.255 0.745 23 H 0.030 0.970 24 H 0.049 0.951 25 H 0.087 0.913 26 H 0.061 0.939 27 H 0.086 0.914 28 H 0.064 0.936 29 H 0.058 0.942 30 H 0.069 0.931 31 H 0.060 0.940 32 H 0.058 0.942 33 H 0.056 0.944 34 H 0.059 0.941 35 H 0.061 0.939 36 H 0.057 0.943 37 H 0.064 0.936 38 H 0.067 0.933 39 H 0.109 0.891 40 H 0.037 0.963 41 H 0.038 0.962 42 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.583 -12.155 -0.478 15.486 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.522 5.522 2 C -0.147 4.147 3 Si 0.719 3.281 4 H -0.209 1.209 5 H -0.200 1.200 6 H -0.215 1.215 7 C -0.497 4.497 8 H 0.090 0.910 9 C 0.027 3.973 10 C -0.058 4.058 11 N -0.154 5.154 12 C -0.118 4.118 13 C -0.180 4.180 14 C -0.040 4.040 15 C -0.129 4.129 16 C -0.153 4.153 17 C -0.156 4.156 18 C -0.151 4.151 19 C -0.161 4.161 20 C -0.223 4.223 21 C -0.234 4.234 22 H 0.066 0.934 23 H 0.048 0.952 24 H 0.068 0.932 25 H 0.105 0.895 26 H 0.079 0.921 27 H 0.104 0.896 28 H 0.083 0.917 29 H 0.077 0.923 30 H 0.087 0.913 31 H 0.079 0.921 32 H 0.076 0.924 33 H 0.074 0.926 34 H 0.078 0.922 35 H 0.080 0.920 36 H 0.076 0.924 37 H 0.083 0.917 38 H 0.086 0.914 39 H 0.127 0.873 40 H 0.055 0.945 41 H 0.056 0.944 42 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 9.118 -11.664 -1.082 14.844 hybrid contribution 0.311 0.538 0.881 1.078 sum 9.429 -11.126 -0.201 14.585 Atomic orbital electron populations 1.70048 1.05769 1.25649 1.50714 1.25040 0.94879 0.99081 0.95710 0.86632 0.79854 0.83651 0.77984 1.20886 1.19992 1.21516 1.20789 0.94100 0.88550 1.46291 0.90994 1.18874 0.85658 0.92559 1.00179 1.22115 0.92722 0.97657 0.93351 1.68976 1.01356 1.08134 1.36934 1.23719 0.91389 1.00133 0.96512 1.23261 0.95703 0.97795 1.01240 1.22502 0.94729 0.91874 0.94925 1.21301 0.99043 0.96217 0.96381 1.21510 0.99769 0.96418 0.97651 1.21507 1.01354 0.97725 0.94991 1.21482 0.99573 0.96908 0.97144 1.21799 0.99887 0.96451 0.97923 1.22848 1.05511 0.98597 0.95351 1.22794 1.07101 1.00123 0.93341 0.93418 0.95199 0.93226 0.89515 0.92112 0.89561 0.91708 0.92285 0.91264 0.92100 0.92352 0.92562 0.92215 0.92043 0.92426 0.91732 0.91441 0.87332 0.94476 0.94375 0.87532 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.21 8.66 55.43 0.48 -24.73 16 2 C 0.05 1.47 5.24 -17.81 -0.09 1.38 16 3 Si 0.89 21.48 29.54 -169.99 -5.02 16.46 16 4 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 5 H -0.27 -6.55 7.11 56.52 0.40 -6.15 16 6 H -0.29 -7.01 7.11 56.52 0.40 -6.60 16 7 C -0.46 -12.57 8.57 -34.44 -0.30 -12.86 16 8 H 0.07 1.91 4.53 -52.49 -0.24 1.67 16 9 C 0.03 0.71 2.52 -155.66 -0.39 0.32 16 10 C 0.07 1.48 4.02 -3.83 -0.02 1.46 16 11 N -0.43 -8.49 5.62 -230.19 -1.29 -9.79 16 12 C 0.01 0.20 5.99 -7.97 -0.05 0.15 16 13 C -0.14 -2.05 7.12 -26.32 -0.19 -2.24 16 14 C 0.05 0.77 0.73 -136.29 -0.10 0.67 16 15 C -0.09 -1.29 5.39 -26.75 -0.14 -1.44 16 16 C -0.12 -1.29 5.84 -26.69 -0.16 -1.45 16 17 C -0.12 -1.25 5.87 -26.77 -0.16 -1.40 16 18 C -0.11 -1.26 5.83 -26.68 -0.16 -1.41 16 19 C -0.12 -1.68 3.71 -26.75 -0.10 -1.78 16 20 C -0.19 -4.82 9.32 -26.73 -0.25 -5.07 16 21 C -0.20 -5.01 9.37 -26.73 -0.25 -5.26 16 22 H 0.26 7.04 8.31 -40.82 -0.34 6.71 16 23 H 0.03 0.61 6.20 -51.93 -0.32 0.29 16 24 H 0.05 1.03 7.14 -51.93 -0.37 0.66 16 25 H 0.09 1.68 6.60 -51.93 -0.34 1.33 16 26 H 0.06 1.06 6.63 -51.93 -0.34 0.72 16 27 H 0.09 1.23 8.10 -51.93 -0.42 0.81 16 28 H 0.06 0.81 7.36 -51.93 -0.38 0.43 16 29 H 0.06 0.89 8.14 -51.93 -0.42 0.46 16 30 H 0.07 1.03 8.12 -51.93 -0.42 0.61 16 31 H 0.06 0.66 7.94 -51.93 -0.41 0.24 16 32 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 33 H 0.06 0.51 8.14 -51.92 -0.42 0.09 16 34 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 35 H 0.06 0.66 7.35 -51.93 -0.38 0.28 16 36 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 37 H 0.06 0.92 6.37 -51.93 -0.33 0.59 16 38 H 0.07 0.99 7.10 -51.93 -0.37 0.62 16 39 H 0.11 3.12 6.32 -51.93 -0.33 2.79 16 40 H 0.04 0.89 8.05 -51.93 -0.42 0.47 16 41 H 0.04 0.89 8.14 -51.92 -0.42 0.46 16 42 H 0.11 2.99 6.26 -51.93 -0.33 2.67 16 LS Contribution 305.91 15.07 4.61 4.61 Total: -1.00 -28.39 305.91 -10.65 -39.03 By element: Atomic # 1 Polarization: 10.43 SS G_CDS: -7.08 Total: 3.35 kcal Atomic # 6 Polarization: -26.58 SS G_CDS: -2.34 Total: -28.93 kcal Atomic # 7 Polarization: -33.71 SS G_CDS: -0.81 Total: -34.52 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -5.02 Total: 16.46 kcal Total LS contribution 4.61 Total: 4.61 kcal Total: -28.39 -10.65 -39.03 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000707348217.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.427 kcal (2) G-P(sol) polarization free energy of solvation -28.387 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.040 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.647 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.034 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.393 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds