Wall clock time and date at job start Mon Mar 30 2020 05:43:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31522 * 1 3 3 Si 1.86794 * 120.00032 * 2 1 4 4 H 1.48498 * 109.47044 * 95.01286 * 3 2 1 5 5 H 1.48501 * 109.47166 * 215.01391 * 3 2 1 6 6 H 1.48504 * 109.47160 * 335.01275 * 3 2 1 7 7 C 1.37881 * 119.99750 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99471 * 172.02910 * 7 2 1 9 9 C 1.50696 * 120.00098 * 352.03208 * 7 2 1 10 10 C 1.53001 * 115.54677 * 183.96784 * 9 7 2 11 11 N 1.46896 * 109.47329 * 325.58236 * 10 9 7 12 12 C 1.47541 * 110.99978 * 91.52740 * 11 10 9 13 13 C 1.53556 * 87.99218 * 138.42435 * 12 11 10 14 14 C 1.47162 * 111.00050 * 187.40707 * 11 10 9 15 15 C 1.52838 * 113.47183 * 106.67847 * 14 11 10 16 16 C 1.53123 * 109.22376 * 172.71396 * 15 14 11 17 17 C 1.52964 * 109.44396 * 58.00107 * 16 15 14 18 18 C 1.52970 * 109.68325 * 298.37090 * 17 16 15 19 19 C 1.52840 * 113.46571 * 336.36008 * 14 11 10 20 20 C 1.52999 * 117.50230 * 38.26113 * 9 7 2 21 21 C 1.52997 * 117.49785 * 329.63817 * 9 7 2 22 22 H 0.96999 * 120.00026 * 359.97438 * 1 2 3 23 23 H 1.09001 * 109.46719 * 85.58577 * 10 9 7 24 24 H 1.09006 * 109.47081 * 205.57716 * 10 9 7 25 25 H 1.08998 * 113.46226 * 253.20855 * 12 11 10 26 26 H 1.08998 * 113.46248 * 23.58502 * 12 11 10 27 27 H 1.09004 * 114.18005 * 87.84434 * 13 12 11 28 28 H 1.08996 * 114.18242 * 220.39719 * 13 12 11 29 29 H 1.08998 * 109.51519 * 292.64223 * 15 14 11 30 30 H 1.09002 * 109.51308 * 52.79073 * 15 14 11 31 31 H 1.08999 * 109.47455 * 298.00660 * 16 15 14 32 32 H 1.09007 * 109.47671 * 177.99591 * 16 15 14 33 33 H 1.09010 * 109.43043 * 178.31291 * 17 16 15 34 34 H 1.08998 * 109.44133 * 58.44369 * 17 16 15 35 35 H 1.08994 * 109.48151 * 301.63899 * 18 17 16 36 36 H 1.09003 * 109.48095 * 181.62078 * 18 17 16 37 37 H 1.08994 * 109.51698 * 307.21221 * 19 14 11 38 38 H 1.09002 * 109.51296 * 67.36941 * 19 14 11 39 39 H 1.09001 * 117.49596 * 0.02562 * 20 9 7 40 40 H 1.08998 * 117.50235 * 145.02063 * 20 9 7 41 41 H 1.09009 * 117.49844 * 214.97895 * 21 9 7 42 42 H 1.09001 * 117.50259 * 0.02562 * 21 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.6026 1.9852 1.3947 5 1 3.4898 1.4730 -0.8033 6 1 1.3977 2.6809 -0.5914 7 6 2.0046 -1.1941 -0.0005 8 1 3.0767 -1.1985 -0.1302 9 6 1.2620 -2.4929 0.1798 10 6 2.1351 -3.7469 0.2576 11 7 3.3032 -3.5854 -0.6184 12 6 4.4412 -3.0045 0.1194 13 6 5.3537 -3.9996 -0.6122 14 6 4.0734 -4.8363 -0.7064 15 6 3.9153 -5.5557 -2.0456 16 6 4.8891 -6.7360 -2.1020 17 6 4.6138 -7.6798 -0.9301 18 6 4.8401 -6.9414 0.3903 19 6 3.8653 -5.7646 0.4898 20 6 -0.1054 -2.6244 -0.4939 21 6 -0.0130 -2.4662 1.0251 22 1 -0.4850 0.8400 0.0004 23 1 2.4688 -3.8941 1.2848 24 1 1.5566 -4.6130 -0.0640 25 1 4.6393 -1.9640 -0.1376 26 1 4.3909 -3.1706 1.1955 27 1 5.7250 -3.6419 -1.5726 28 1 6.1312 -4.4363 0.0144 29 1 2.8933 -5.9219 -2.1438 30 1 4.1344 -4.8637 -2.8587 31 1 5.9124 -6.3661 -2.0381 32 1 4.7549 -7.2734 -3.0408 33 1 5.2872 -8.5351 -0.9874 34 1 3.5819 -8.0275 -0.9791 35 1 5.8638 -6.5693 0.4279 36 1 4.6709 -7.6247 1.2225 37 1 4.0502 -5.2158 1.4132 38 1 2.8415 -6.1387 0.4866 39 1 -0.4677 -1.7715 -1.0679 40 1 -0.3832 -3.6043 -0.8819 41 1 -0.2300 -3.3423 1.6364 42 1 -0.3149 -1.5092 1.4505 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000707348217.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:43:27 Heat of formation + Delta-G solvation = 40.676244 kcal Electronic energy + Delta-G solvation = -19510.369795 eV Core-core repulsion = 16877.256734 eV Total energy + Delta-G solvation = -2633.113060 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 249.179 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -42.07042 -38.42023 -36.86126 -33.66600 -31.84708 -30.88621 -29.64056 -27.62837 -25.35353 -24.07423 -23.35884 -22.65940 -21.44670 -20.79260 -18.74726 -17.95041 -17.12023 -16.81789 -16.31466 -15.83805 -15.42399 -15.27636 -14.56328 -14.51583 -13.99918 -13.87732 -13.51435 -13.18495 -12.95209 -12.92384 -12.81831 -12.47693 -12.39179 -12.14424 -12.03793 -11.94054 -11.80451 -11.55377 -11.28820 -11.24284 -11.03111 -10.79394 -10.62300 -10.17792 -9.99310 -9.34849 -7.95848 -6.02499 1.41358 1.42214 1.51301 2.45798 3.02809 3.23280 3.59383 3.78717 3.93304 4.00536 4.19537 4.24671 4.29744 4.37662 4.43202 4.50936 4.55852 4.65025 4.70156 4.73649 4.78146 4.89235 4.91605 4.97800 5.04602 5.10497 5.16412 5.16764 5.26553 5.27539 5.30785 5.33256 5.38764 5.40228 5.56832 5.59316 5.66848 5.89558 5.99578 6.19186 6.45941 6.60843 7.00621 7.53094 8.99635 Molecular weight = 249.18amu Principal moments of inertia in cm(-1) A = 0.031263 B = 0.006577 C = 0.005974 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 895.405864 B = 4256.033425 C = 4685.593654 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.907 5.907 2 C 0.003 3.997 3 Si 0.952 3.048 4 H -0.277 1.277 5 H -0.269 1.269 6 H -0.291 1.291 7 C -0.475 4.475 8 H 0.076 0.924 9 C 0.018 3.982 10 C 0.085 3.915 11 N -0.467 5.467 12 C 0.005 3.995 13 C -0.122 4.122 14 C 0.053 3.947 15 C -0.091 4.091 16 C -0.109 4.109 17 C -0.117 4.117 18 C -0.108 4.108 19 C -0.120 4.120 20 C -0.190 4.190 21 C -0.194 4.194 22 H 0.253 0.747 23 H 0.035 0.965 24 H 0.051 0.949 25 H 0.064 0.936 26 H 0.063 0.937 27 H 0.089 0.911 28 H 0.093 0.907 29 H 0.043 0.957 30 H 0.056 0.944 31 H 0.071 0.929 32 H 0.070 0.930 33 H 0.078 0.922 34 H 0.052 0.948 35 H 0.072 0.928 36 H 0.070 0.930 37 H 0.058 0.942 38 H 0.054 0.946 39 H 0.077 0.923 40 H 0.054 0.946 41 H 0.061 0.939 42 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.856 -13.762 -0.343 18.168 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.547 5.547 2 C -0.195 4.195 3 Si 0.779 3.221 4 H -0.203 1.203 5 H -0.194 1.194 6 H -0.217 1.217 7 C -0.513 4.513 8 H 0.094 0.906 9 C 0.018 3.982 10 C -0.043 4.043 11 N -0.188 5.188 12 C -0.124 4.124 13 C -0.159 4.159 14 C -0.037 4.037 15 C -0.130 4.130 16 C -0.147 4.147 17 C -0.154 4.154 18 C -0.146 4.146 19 C -0.158 4.158 20 C -0.228 4.228 21 C -0.232 4.232 22 H 0.062 0.938 23 H 0.053 0.947 24 H 0.069 0.931 25 H 0.083 0.917 26 H 0.081 0.919 27 H 0.107 0.893 28 H 0.111 0.889 29 H 0.062 0.938 30 H 0.075 0.925 31 H 0.089 0.911 32 H 0.088 0.912 33 H 0.097 0.903 34 H 0.071 0.929 35 H 0.091 0.909 36 H 0.089 0.911 37 H 0.077 0.923 38 H 0.073 0.927 39 H 0.096 0.904 40 H 0.072 0.928 41 H 0.080 0.920 42 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 11.403 -13.282 -0.947 17.531 hybrid contribution -0.434 1.041 0.814 1.390 sum 10.969 -12.241 -0.133 16.438 Atomic orbital electron populations 1.70216 1.06972 1.26016 1.51482 1.25795 0.95683 1.02292 0.95729 0.85654 0.78654 0.79703 0.78105 1.20270 1.19366 1.21697 1.21164 0.94585 0.89592 1.45936 0.90575 1.19160 0.85908 0.94010 0.99158 1.21867 0.93019 0.95325 0.94120 1.68917 1.01584 1.11387 1.36907 1.23715 0.92110 0.99686 0.96880 1.23178 0.95613 0.95879 1.01248 1.22607 0.93985 0.90902 0.96219 1.21310 0.99214 0.97153 0.95286 1.21478 0.99190 0.95276 0.98725 1.21513 1.01606 0.98142 0.94185 1.21472 0.99136 0.95928 0.98037 1.21769 1.00166 0.97169 0.96721 1.22700 1.06607 0.98161 0.95340 1.22671 1.07704 0.99671 0.93153 0.93795 0.94686 0.93100 0.91735 0.91930 0.89265 0.88865 0.93815 0.92478 0.91052 0.91167 0.90322 0.92872 0.90930 0.91125 0.92347 0.92686 0.90416 0.92769 0.92036 0.90261 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -53.24 8.66 21.45 0.19 -53.06 16 2 C 0.00 0.15 5.24 84.65 0.44 0.59 16 3 Si 0.95 44.71 29.54 68.60 2.03 46.74 16 4 H -0.28 -12.66 7.11 99.48 0.71 -11.95 16 5 H -0.27 -12.26 7.11 99.48 0.71 -11.55 16 6 H -0.29 -13.64 7.11 99.48 0.71 -12.93 16 7 C -0.48 -26.32 8.57 25.60 0.22 -26.10 16 8 H 0.08 4.08 4.53 -2.91 -0.01 4.06 16 9 C 0.02 0.94 2.52 -52.93 -0.13 0.81 16 10 C 0.09 3.59 4.02 86.30 0.35 3.94 16 11 N -0.47 -18.08 5.62 -882.19 -4.95 -23.03 16 12 C 0.00 0.17 5.99 83.26 0.50 0.67 16 13 C -0.12 -3.22 7.12 30.86 0.22 -3.00 16 14 C 0.05 1.54 0.73 0.34 0.00 1.54 16 15 C -0.09 -2.45 5.39 30.58 0.16 -2.28 16 16 C -0.11 -2.09 5.84 30.62 0.18 -1.91 16 17 C -0.12 -2.05 5.87 30.57 0.18 -1.87 16 18 C -0.11 -2.01 5.83 30.63 0.18 -1.83 16 19 C -0.12 -3.05 3.71 30.58 0.11 -2.93 16 20 C -0.19 -10.10 9.32 30.59 0.29 -9.81 16 21 C -0.19 -10.07 9.37 30.59 0.29 -9.78 16 22 H 0.25 14.32 8.31 -92.71 -0.77 13.55 16 23 H 0.04 1.42 6.20 -2.39 -0.01 1.41 16 24 H 0.05 2.09 7.14 -2.38 -0.02 2.07 16 25 H 0.06 2.49 6.60 -2.39 -0.02 2.48 16 26 H 0.06 2.13 6.63 -2.39 -0.02 2.11 16 27 H 0.09 2.32 8.10 -2.38 -0.02 2.31 16 28 H 0.09 1.97 7.36 -2.39 -0.02 1.95 16 29 H 0.04 1.28 8.14 -2.39 -0.02 1.26 16 30 H 0.06 1.64 8.12 -2.39 -0.02 1.62 16 31 H 0.07 1.25 7.94 -2.39 -0.02 1.23 16 32 H 0.07 1.20 8.14 -2.38 -0.02 1.18 16 33 H 0.08 1.08 8.14 -2.38 -0.02 1.06 16 34 H 0.05 1.01 8.14 -2.39 -0.02 0.99 16 35 H 0.07 1.22 7.35 -2.39 -0.02 1.20 16 36 H 0.07 1.17 8.14 -2.39 -0.02 1.15 16 37 H 0.06 1.55 6.37 -2.39 -0.02 1.54 16 38 H 0.05 1.53 7.10 -2.39 -0.02 1.51 16 39 H 0.08 4.63 6.32 -2.39 -0.02 4.61 16 40 H 0.05 2.63 8.05 -2.39 -0.02 2.61 16 41 H 0.06 2.85 8.14 -2.38 -0.02 2.83 16 42 H 0.08 4.58 6.26 -2.39 -0.01 4.56 16 Total: -1.00 -61.66 305.91 1.22 -60.44 By element: Atomic # 1 Polarization: 19.90 SS G_CDS: 0.98 Total: 20.88 kcal Atomic # 6 Polarization: -54.96 SS G_CDS: 2.98 Total: -51.97 kcal Atomic # 7 Polarization: -71.32 SS G_CDS: -4.77 Total: -76.09 kcal Atomic # 14 Polarization: 44.71 SS G_CDS: 2.03 Total: 46.74 kcal Total: -61.66 1.22 -60.44 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000707348217.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.118 kcal (2) G-P(sol) polarization free energy of solvation -61.665 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.453 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.223 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.441 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.676 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds