Wall clock time and date at job start Mon Mar 30 2020 06:52:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86807 * 119.99790 * 2 1 4 4 H 1.48495 * 109.46835 * 269.99512 * 3 2 1 5 5 H 1.48500 * 109.47035 * 29.99840 * 3 2 1 6 6 H 1.48501 * 109.46814 * 149.99762 * 3 2 1 7 7 C 1.37881 * 120.00481 * 179.97438 * 2 1 3 8 8 H 1.07996 * 119.99642 * 359.97438 * 7 2 1 9 9 C 1.50700 * 120.00139 * 180.02562 * 7 2 1 10 10 H 1.08998 * 109.79786 * 53.78807 * 9 7 2 11 11 C 1.54316 * 109.62709 * 293.29202 * 9 7 2 12 12 C 1.45878 * 112.18534 * 161.76861 * 11 9 7 13 13 C 1.54307 * 112.18977 * 61.11946 * 12 11 9 14 14 C 1.50449 * 108.48783 * 281.46651 * 13 12 11 15 15 N 1.47993 * 112.74693 * 93.78985 * 14 13 12 16 16 C 1.46900 * 111.00155 * 84.77524 * 15 14 13 17 17 C 1.52991 * 117.49760 * 113.65905 * 16 15 14 18 18 C 1.52991 * 117.49980 * 45.03455 * 16 15 14 19 19 C 1.47933 * 114.66766 * 317.91633 * 15 14 13 20 20 H 1.09004 * 108.63160 * 79.04589 * 19 15 14 21 21 C 1.53003 * 108.85067 * 197.34561 * 19 15 14 22 22 C 1.53003 * 117.49909 * 16.78783 * 21 19 15 23 23 C 1.53004 * 117.49959 * 308.12976 * 21 19 15 24 24 H 0.97000 * 120.00671 * 0.02562 * 1 2 3 25 25 H 1.08993 * 108.94020 * 41.06273 * 11 9 7 26 26 H 1.09007 * 108.86441 * 282.41056 * 11 9 7 27 27 H 1.08999 * 108.93351 * 300.41616 * 12 11 9 28 28 H 1.09005 * 108.93396 * 181.82067 * 12 11 9 29 29 H 1.09004 * 109.63326 * 161.76531 * 13 12 11 30 30 H 1.08992 * 109.79951 * 41.26404 * 13 12 11 31 31 H 1.09005 * 108.80433 * 214.59672 * 14 13 12 32 32 H 1.09004 * 108.81299 * 332.97650 * 14 13 12 33 33 H 1.09003 * 115.54626 * 259.36555 * 16 15 14 34 34 H 1.09002 * 117.50414 * 359.97438 * 17 16 15 35 35 H 1.09004 * 117.49916 * 145.02211 * 17 16 15 36 36 H 1.09003 * 117.50343 * 214.97877 * 18 16 15 37 37 H 1.08997 * 117.49871 * 359.97438 * 18 16 15 38 38 H 1.09003 * 115.55057 * 162.46008 * 21 19 15 39 39 H 1.09003 * 117.49570 * 0.02562 * 22 21 19 40 40 H 1.09006 * 117.49696 * 145.02127 * 22 21 19 41 41 H 1.08995 * 117.49886 * 214.97874 * 23 21 19 42 42 H 1.09005 * 117.49583 * 359.97438 * 23 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4000 5 1 1.4464 2.6527 0.7000 6 1 3.5466 1.4403 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 1.4646 -2.1293 0.0014 9 6 3.5116 -1.1939 0.0011 10 1 3.8804 -0.5879 0.8286 11 6 4.0304 -0.6195 -1.3339 12 6 5.4238 -0.1964 -1.2470 13 6 6.3676 -1.3668 -0.8996 14 6 6.2708 -1.6354 0.5776 15 7 5.2825 -2.6874 0.9043 16 6 5.8799 -4.0246 0.7904 17 6 6.0336 -4.8414 2.0748 18 6 7.2662 -4.2335 1.4027 19 6 4.0171 -2.6038 0.1425 20 1 4.1809 -3.0200 -0.8515 21 6 2.9536 -3.4398 0.8574 22 6 3.2230 -3.8320 2.3116 23 6 3.3087 -4.8868 1.2056 24 1 -0.4851 0.8400 -0.0004 25 1 3.4172 0.2374 -1.6124 26 1 3.9403 -1.3842 -2.1054 27 1 5.5133 0.5706 -0.4778 28 1 5.7248 0.2285 -2.2047 29 1 7.3925 -1.0995 -1.1569 30 1 6.0712 -2.2572 -1.4539 31 1 7.2494 -1.9467 0.9430 32 1 5.9838 -0.7139 1.0843 33 1 5.6477 -4.5666 -0.1264 34 1 5.6918 -4.3865 3.0046 35 1 5.9025 -5.9211 2.0034 36 1 7.9461 -4.9133 0.8891 37 1 7.7353 -3.3786 1.8897 38 1 1.9219 -3.2286 0.5759 39 1 4.1577 -3.4940 2.7591 40 1 2.3684 -3.8791 2.9867 41 1 2.5106 -5.6273 1.1536 42 1 4.2998 -5.2432 0.9250 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000709919271.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:52:25 Heat of formation + Delta-G solvation = 70.353879 kcal Electronic energy + Delta-G solvation = -20119.563904 eV Core-core repulsion = 17487.737762 eV Total energy + Delta-G solvation = -2631.826141 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 249.179 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.28473 -38.02464 -37.14326 -34.84700 -33.33272 -32.60033 -28.41280 -26.67374 -25.09857 -23.67869 -23.27355 -22.31259 -21.54032 -21.01276 -19.69349 -18.56951 -17.55034 -16.94670 -16.40128 -15.73366 -15.44889 -15.33525 -15.08228 -14.66316 -14.38104 -14.18257 -13.52669 -13.46272 -12.95280 -12.89696 -12.58244 -12.45393 -12.26475 -12.16126 -11.91755 -11.74687 -11.55829 -11.34503 -11.16411 -10.96191 -10.89548 -10.69002 -10.52341 -10.39679 -10.28264 -8.87256 -8.19754 -6.21328 1.29968 1.35339 1.44660 2.37223 2.85383 3.03746 3.12851 3.32603 3.83036 4.03390 4.07473 4.12593 4.23155 4.27944 4.35621 4.40305 4.42631 4.57077 4.62630 4.68550 4.82232 4.85488 4.90265 4.93925 4.99159 5.01896 5.10593 5.15415 5.20659 5.25383 5.32360 5.34151 5.41129 5.43968 5.53612 5.60685 5.70181 5.73471 5.83434 6.32735 6.48275 6.57267 6.88130 7.42315 8.93697 Molecular weight = 249.18amu Principal moments of inertia in cm(-1) A = 0.023971 B = 0.009721 C = 0.007579 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1167.793609 B = 2879.615504 C = 3693.590880 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.952 5.952 2 C 0.013 3.987 3 Si 0.930 3.070 4 H -0.271 1.271 5 H -0.302 1.302 6 H -0.246 1.246 7 C -0.502 4.502 8 H 0.066 0.934 9 C 0.027 3.973 10 H 0.027 0.973 11 C -0.124 4.124 12 C -0.119 4.119 13 C -0.132 4.132 14 C 0.058 3.942 15 N -0.524 5.524 16 C 0.001 3.999 17 C -0.163 4.163 18 C -0.169 4.169 19 C 0.162 3.838 20 H 0.023 0.977 21 C -0.163 4.163 22 C -0.162 4.162 23 C -0.192 4.192 24 H 0.261 0.739 25 H 0.031 0.969 26 H 0.048 0.952 27 H 0.050 0.950 28 H 0.064 0.936 29 H 0.089 0.911 30 H 0.056 0.944 31 H 0.093 0.907 32 H 0.053 0.947 33 H 0.084 0.916 34 H 0.093 0.907 35 H 0.105 0.895 36 H 0.110 0.890 37 H 0.099 0.901 38 H 0.097 0.903 39 H 0.112 0.888 40 H 0.066 0.934 41 H 0.078 0.922 42 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.788 -7.035 1.160 18.239 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.594 5.594 2 C -0.183 4.183 3 Si 0.758 3.242 4 H -0.197 1.197 5 H -0.230 1.230 6 H -0.170 1.170 7 C -0.540 4.540 8 H 0.084 0.916 9 C 0.008 3.992 10 H 0.045 0.955 11 C -0.162 4.162 12 C -0.156 4.156 13 C -0.171 4.171 14 C -0.069 4.069 15 N -0.248 5.248 16 C -0.107 4.107 17 C -0.201 4.201 18 C -0.206 4.206 19 C 0.055 3.945 20 H 0.041 0.959 21 C -0.181 4.181 22 C -0.198 4.198 23 C -0.228 4.228 24 H 0.070 0.930 25 H 0.050 0.950 26 H 0.067 0.933 27 H 0.068 0.932 28 H 0.083 0.917 29 H 0.107 0.893 30 H 0.075 0.925 31 H 0.111 0.889 32 H 0.072 0.928 33 H 0.101 0.899 34 H 0.111 0.889 35 H 0.124 0.876 36 H 0.128 0.872 37 H 0.118 0.882 38 H 0.115 0.885 39 H 0.130 0.870 40 H 0.084 0.916 41 H 0.096 0.904 42 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 16.527 -6.840 1.614 17.960 hybrid contribution -0.669 1.048 -0.954 1.567 sum 15.858 -5.793 0.660 16.896 Atomic orbital electron populations 1.70031 1.07941 1.27416 1.53995 1.25758 0.95215 1.02305 0.95000 0.86075 0.79812 0.79981 0.78367 1.19743 1.22967 1.16989 1.21778 0.91065 0.93482 1.47716 0.91638 1.18818 0.93802 0.93418 0.93168 0.95521 1.20910 0.95993 0.99794 0.99490 1.20645 0.94979 0.98525 1.01461 1.21809 0.99895 0.97798 0.97618 1.22001 0.95576 0.94614 0.94696 1.61406 1.03798 1.01875 1.57691 1.22429 0.99716 0.91770 0.96824 1.23271 1.00998 0.99135 0.96652 1.23320 0.90384 1.03380 1.03499 1.20308 0.86831 0.95101 0.92279 0.95914 1.22807 0.99976 0.95912 0.99430 1.22866 1.02596 1.03294 0.91093 1.23554 1.03646 0.91432 1.04211 0.93035 0.95006 0.93304 0.93162 0.91697 0.89265 0.92538 0.88883 0.92814 0.89853 0.88894 0.87628 0.87212 0.88232 0.88507 0.86952 0.91578 0.90357 0.85881 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -60.05 13.96 21.45 0.30 -59.75 16 2 C 0.01 0.77 5.42 84.66 0.46 1.23 16 3 Si 0.93 45.71 24.81 68.60 1.70 47.42 16 4 H -0.27 -12.84 6.87 99.48 0.68 -12.15 16 5 H -0.30 -14.99 7.11 99.48 0.71 -14.28 16 6 H -0.25 -11.32 6.37 99.48 0.63 -10.68 16 7 C -0.50 -28.04 8.24 25.60 0.21 -27.83 16 8 H 0.07 3.98 4.94 -2.91 -0.01 3.96 16 9 C 0.03 1.24 1.24 -11.92 -0.01 1.22 16 10 H 0.03 1.30 5.71 -2.39 -0.01 1.28 16 11 C -0.12 -5.13 4.01 28.86 0.12 -5.02 16 12 C -0.12 -3.89 5.30 28.85 0.15 -3.74 16 13 C -0.13 -3.57 5.59 30.21 0.17 -3.40 16 14 C 0.06 1.63 5.08 85.27 0.43 2.06 16 15 N -0.52 -16.55 3.27 -850.11 -2.78 -19.33 16 16 C 0.00 0.03 3.13 44.91 0.14 0.17 16 17 C -0.16 -3.49 7.40 30.59 0.23 -3.26 16 18 C -0.17 -3.18 9.47 30.59 0.29 -2.89 16 19 C 0.16 6.35 1.62 43.89 0.07 6.42 16 20 H 0.02 0.92 6.32 -2.38 -0.02 0.90 16 21 C -0.16 -6.67 5.02 -10.79 -0.05 -6.72 16 22 C -0.16 -5.76 9.26 30.62 0.28 -5.48 16 23 C -0.19 -6.18 9.21 30.62 0.28 -5.90 16 24 H 0.26 15.61 8.31 -92.71 -0.77 14.84 16 25 H 0.03 1.44 4.53 -2.39 -0.01 1.43 16 26 H 0.05 1.99 7.51 -2.38 -0.02 1.97 16 27 H 0.05 1.70 7.52 -2.39 -0.02 1.68 16 28 H 0.06 1.88 8.14 -2.38 -0.02 1.86 16 29 H 0.09 1.88 8.14 -2.39 -0.02 1.86 16 30 H 0.06 1.61 7.00 -2.39 -0.02 1.59 16 31 H 0.09 2.10 5.57 -2.38 -0.01 2.08 16 32 H 0.05 1.72 6.58 -2.38 -0.02 1.70 16 33 H 0.08 2.19 7.27 -2.39 -0.02 2.18 16 34 H 0.09 2.22 6.49 -2.39 -0.02 2.20 16 35 H 0.11 1.94 7.91 -2.38 -0.02 1.92 16 36 H 0.11 1.64 8.14 -2.39 -0.02 1.62 16 37 H 0.10 1.85 6.65 -2.39 -0.02 1.83 16 38 H 0.10 4.80 4.83 -2.39 -0.01 4.79 16 39 H 0.11 3.83 4.73 -2.39 -0.01 3.82 16 40 H 0.07 2.41 8.14 -2.38 -0.02 2.39 16 41 H 0.08 2.42 8.14 -2.39 -0.02 2.40 16 42 H 0.12 3.42 3.44 -2.38 -0.01 3.42 16 Total: -1.00 -63.09 288.40 2.91 -60.18 By element: Atomic # 1 Polarization: 23.69 SS G_CDS: 0.92 Total: 24.61 kcal Atomic # 6 Polarization: -55.89 SS G_CDS: 2.76 Total: -53.13 kcal Atomic # 7 Polarization: -76.60 SS G_CDS: -2.48 Total: -79.08 kcal Atomic # 14 Polarization: 45.71 SS G_CDS: 1.70 Total: 47.42 kcal Total: -63.09 2.91 -60.18 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000709919271.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 130.536 kcal (2) G-P(sol) polarization free energy of solvation -63.089 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.447 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.907 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.183 kcal (6) G-S(sol) free energy of system = (1) + (5) 70.354 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds