Wall clock time and date at job start Mon Mar 30 2020 06:44:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86806 * 119.99701 * 2 1 4 4 H 1.48499 * 109.47164 * 239.99828 * 3 2 1 5 5 H 1.48495 * 109.46896 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.46711 * 119.99907 * 3 2 1 7 7 C 1.37876 * 120.00074 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99879 * 173.47677 * 7 2 1 9 9 C 1.50694 * 120.00252 * 353.47735 * 7 2 1 10 10 C 1.52999 * 115.54958 * 85.31582 * 9 7 2 11 11 N 1.46903 * 109.47312 * 65.04907 * 10 9 7 12 12 C 1.46898 * 111.00365 * 185.41917 * 11 10 9 13 13 H 1.08998 * 109.47353 * 34.98987 * 12 11 10 14 14 C 1.52948 * 109.47625 * 274.98247 * 12 11 10 15 15 C 1.52941 * 109.81931 * 177.01572 * 14 12 11 16 16 C 1.53181 * 109.45045 * 62.98799 * 15 14 12 17 17 C 1.53156 * 108.87902 * 303.42461 * 16 15 14 18 18 C 1.52806 * 117.75002 * 199.63389 * 17 16 15 19 19 C 1.52845 * 117.67549 * 268.52112 * 17 16 15 20 20 C 1.53159 * 115.00406 * 53.94673 * 17 16 15 21 21 C 1.52998 * 117.50058 * 230.98735 * 9 7 2 22 22 C 1.53006 * 117.49914 * 299.64485 * 9 7 2 23 23 H 0.97001 * 120.00709 * 359.97438 * 1 2 3 24 24 H 1.09003 * 109.47141 * 305.05175 * 10 9 7 25 25 H 1.09000 * 109.47382 * 185.04906 * 10 9 7 26 26 H 1.00899 * 110.99770 * 61.46908 * 11 10 9 27 27 H 1.09001 * 109.40873 * 297.12150 * 14 12 11 28 28 H 1.09003 * 109.41653 * 56.90611 * 14 12 11 29 29 H 1.09002 * 109.47595 * 302.98942 * 15 14 12 30 30 H 1.09003 * 109.47868 * 182.97953 * 15 14 12 31 31 H 1.09000 * 109.56743 * 183.60822 * 16 15 14 32 32 H 1.09001 * 109.66768 * 63.30354 * 16 15 14 33 33 H 1.08998 * 117.49914 * 215.10688 * 18 17 16 34 34 H 1.08996 * 117.50422 * 0.14864 * 18 17 16 35 35 H 1.09000 * 117.50460 * 359.71730 * 19 17 16 36 36 H 1.09003 * 117.50463 * 144.77852 * 19 17 16 37 37 H 1.08999 * 109.56692 * 186.23842 * 20 17 16 38 38 H 1.08998 * 109.56890 * 65.87331 * 20 17 16 39 39 H 1.09002 * 117.49911 * 215.00588 * 21 9 7 40 40 H 1.09003 * 117.49952 * 0.02562 * 21 9 7 41 41 H 1.08999 * 117.49448 * 359.97438 * 22 9 7 42 42 H 1.09003 * 117.49393 * 144.97527 * 22 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.1028 1.6965 -1.2125 5 1 1.2840 2.7464 0.0006 6 1 3.1027 1.6965 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0793 -1.1971 -0.1057 9 6 1.2584 -2.4948 0.1494 10 6 0.6991 -3.0866 -1.1459 11 7 1.8088 -3.4588 -2.0336 12 6 1.3099 -3.9118 -3.3389 13 1 0.4198 -3.3418 -3.6054 14 6 0.9594 -5.3986 -3.2628 15 6 0.3695 -5.8612 -4.5958 16 6 1.4209 -5.7086 -5.6993 17 6 1.8902 -4.2512 -5.7385 18 6 2.5708 -3.7570 -7.0142 19 6 1.1528 -3.2928 -6.6733 20 6 2.3915 -3.6964 -4.4018 21 6 1.7498 -3.4728 1.2184 22 6 0.4452 -2.7004 1.4290 23 1 -0.4851 0.8400 0.0004 24 1 0.0699 -2.3471 -1.6413 25 1 0.1063 -3.9717 -0.9148 26 1 2.3936 -4.1614 -1.6064 27 1 1.8605 -5.9726 -3.0467 28 1 0.2300 -5.5588 -2.4687 29 1 -0.5024 -5.2534 -4.8379 30 1 0.0730 -6.9073 -4.5186 31 1 0.9828 -5.9770 -6.6606 32 1 2.2695 -6.3600 -5.4901 33 1 3.3774 -3.0319 -6.9058 34 1 2.6845 -4.4684 -7.8321 35 1 0.3338 -3.6991 -7.2669 36 1 1.0267 -2.2625 -6.3406 37 1 2.5969 -2.6307 -4.5029 38 1 3.3016 -4.2192 -4.1078 39 1 1.6747 -4.5379 0.9989 40 1 2.6126 -3.1752 1.8145 41 1 0.4502 -1.8949 2.1633 42 1 -0.4885 -3.2570 1.3479 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000709978900.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:44:20 Heat of formation + Delta-G solvation = 28.620964 kcal Electronic energy + Delta-G solvation = -18762.283498 eV Core-core repulsion = 16128.647681 eV Total energy + Delta-G solvation = -2633.635816 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 249.179 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -39.37909 -36.98003 -35.29618 -32.77532 -31.77070 -29.26341 -27.20231 -25.53376 -24.04147 -22.45258 -21.90591 -21.08993 -20.42770 -19.06407 -18.38450 -16.12148 -15.31954 -15.21647 -14.58030 -14.33224 -14.29302 -13.70777 -13.45770 -13.00261 -12.87248 -12.67486 -12.33747 -11.95637 -11.45761 -11.36281 -11.27094 -10.99801 -10.86924 -10.84385 -10.68989 -10.56004 -10.41523 -10.18003 -10.11241 -9.84104 -9.52566 -9.25462 -8.73757 -8.30715 -7.99505 -7.40588 -5.89983 -3.91006 3.39603 3.43273 3.46875 3.83744 4.51959 4.59968 4.82061 4.85813 4.97978 5.20552 5.23151 5.31664 5.40507 5.47842 5.54891 5.61061 5.69757 5.73456 5.81098 5.95574 6.00494 6.02674 6.12600 6.21668 6.22792 6.29273 6.31577 6.34442 6.45175 6.57276 6.59419 6.68754 6.75042 6.79703 6.98065 7.17436 7.52963 7.67024 8.02821 8.07186 8.27777 8.62864 9.07602 9.71629 11.20032 Molecular weight = 249.18amu Principal moments of inertia in cm(-1) A = 0.022465 B = 0.006095 C = 0.005175 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1246.080061 B = 4592.985033 C = 5408.936375 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.887 5.887 2 C 0.067 3.933 3 Si 0.887 3.113 4 H -0.277 1.277 5 H -0.290 1.290 6 H -0.279 1.279 7 C -0.468 4.468 8 H 0.058 0.942 9 C 0.053 3.947 10 C 0.110 3.890 11 N -0.665 5.665 12 C 0.093 3.907 13 H 0.072 0.928 14 C -0.148 4.148 15 C -0.111 4.111 16 C -0.079 4.079 17 C -0.118 4.118 18 C -0.179 4.179 19 C -0.176 4.176 20 C -0.066 4.066 21 C -0.216 4.216 22 C -0.159 4.159 23 H 0.257 0.743 24 H 0.074 0.926 25 H -0.007 1.007 26 H 0.329 0.671 27 H 0.059 0.941 28 H 0.058 0.942 29 H 0.061 0.939 30 H 0.056 0.944 31 H 0.057 0.943 32 H 0.064 0.936 33 H 0.092 0.908 34 H 0.088 0.912 35 H 0.088 0.912 36 H 0.095 0.905 37 H 0.070 0.930 38 H 0.063 0.937 39 H 0.059 0.941 40 H 0.075 0.925 41 H 0.080 0.920 42 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.447 -10.238 -10.575 14.790 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.525 5.525 2 C -0.135 4.135 3 Si 0.716 3.284 4 H -0.203 1.203 5 H -0.216 1.216 6 H -0.205 1.205 7 C -0.506 4.506 8 H 0.076 0.924 9 C 0.052 3.948 10 C -0.019 4.019 11 N -0.293 5.293 12 C -0.018 4.018 13 H 0.091 0.909 14 C -0.188 4.188 15 C -0.149 4.149 16 C -0.116 4.116 17 C -0.119 4.119 18 C -0.216 4.216 19 C -0.212 4.212 20 C -0.104 4.104 21 C -0.253 4.253 22 C -0.198 4.198 23 H 0.067 0.933 24 H 0.093 0.907 25 H 0.011 0.989 26 H 0.146 0.854 27 H 0.078 0.922 28 H 0.076 0.924 29 H 0.080 0.920 30 H 0.075 0.925 31 H 0.076 0.924 32 H 0.082 0.918 33 H 0.111 0.889 34 H 0.107 0.893 35 H 0.107 0.893 36 H 0.113 0.887 37 H 0.089 0.911 38 H 0.081 0.919 39 H 0.077 0.923 40 H 0.094 0.906 41 H 0.099 0.901 42 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 1.390 -9.432 -10.768 14.382 hybrid contribution -0.042 0.044 0.250 0.257 sum 1.349 -9.388 -10.518 14.162 Atomic orbital electron populations 1.69997 1.05794 1.26185 1.50494 1.24928 0.94740 0.98661 0.95122 0.86743 0.79648 0.83515 0.78540 1.20290 1.21568 1.20484 1.20267 0.92796 0.88438 1.49137 0.92358 1.18837 0.96993 0.93660 0.85291 1.21541 0.90723 0.95557 0.94033 1.60339 1.21625 1.44507 1.02829 1.21510 0.97111 0.92202 0.90948 0.90935 1.22284 1.00718 0.98619 0.97133 1.21440 0.98237 1.00363 0.94902 1.21122 0.98372 0.93731 0.98372 1.21543 1.03516 0.94874 0.91956 1.22961 0.96152 1.03723 0.98760 1.23014 0.94854 1.00038 1.03344 1.21093 0.97796 1.00843 0.90680 1.22984 0.98449 0.95410 1.08496 1.22514 0.91958 1.01164 1.04130 0.93326 0.90739 0.98920 0.85398 0.92233 0.92354 0.91998 0.92526 0.92381 0.91784 0.88903 0.89334 0.89323 0.88680 0.91115 0.91866 0.92260 0.90593 0.90138 0.92239 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.49 12.92 55.43 0.72 -24.77 16 2 C 0.07 1.87 5.39 -17.82 -0.10 1.77 16 3 Si 0.89 21.67 29.54 -169.99 -5.02 16.65 16 4 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 5 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 6 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 7 C -0.47 -12.90 8.74 -34.44 -0.30 -13.20 16 8 H 0.06 1.63 7.82 -52.48 -0.41 1.22 16 9 C 0.05 1.30 1.55 -155.66 -0.24 1.06 16 10 C 0.11 2.47 5.33 -3.82 -0.02 2.45 16 11 N -0.67 -12.98 6.13 -106.66 -0.65 -13.64 16 12 C 0.09 1.51 2.47 -67.65 -0.17 1.35 16 13 H 0.07 1.30 7.71 -51.93 -0.40 0.90 16 14 C -0.15 -2.05 5.08 -26.79 -0.14 -2.18 16 15 C -0.11 -1.31 5.93 -26.67 -0.16 -1.47 16 16 C -0.08 -0.87 5.67 -26.56 -0.15 -1.02 16 17 C -0.12 -1.46 1.97 -154.53 -0.30 -1.77 16 18 C -0.18 -1.99 9.99 -26.81 -0.27 -2.26 16 19 C -0.18 -2.09 9.93 -26.79 -0.27 -2.36 16 20 C -0.07 -0.97 5.28 -26.56 -0.14 -1.11 16 21 C -0.22 -4.75 9.96 -26.70 -0.27 -5.01 16 22 C -0.16 -3.81 9.42 -26.69 -0.25 -4.06 16 23 H 0.26 7.13 8.31 -40.82 -0.34 6.79 16 24 H 0.07 1.89 7.92 -51.93 -0.41 1.48 16 25 H -0.01 -0.15 7.46 -51.93 -0.39 -0.54 16 26 H 0.33 6.07 8.54 -39.29 -0.34 5.73 16 27 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 28 H 0.06 0.86 7.48 -51.93 -0.39 0.47 16 29 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16 30 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 31 H 0.06 0.58 8.09 -51.93 -0.42 0.16 16 32 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 33 H 0.09 1.04 8.14 -51.93 -0.42 0.61 16 34 H 0.09 0.86 8.14 -51.93 -0.42 0.44 16 35 H 0.09 0.95 8.14 -51.93 -0.42 0.53 16 36 H 0.09 1.22 8.14 -51.93 -0.42 0.79 16 37 H 0.07 1.16 8.09 -51.93 -0.42 0.74 16 38 H 0.06 0.92 8.14 -51.93 -0.42 0.49 16 39 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 40 H 0.08 1.67 8.14 -51.93 -0.42 1.24 16 41 H 0.08 2.05 8.14 -51.93 -0.42 1.63 16 42 H 0.06 1.34 8.14 -51.93 -0.42 0.92 16 LS Contribution 333.92 15.07 5.03 5.03 Total: -1.00 -27.90 333.92 -10.50 -38.40 By element: Atomic # 1 Polarization: 13.95 SS G_CDS: -7.81 Total: 6.15 kcal Atomic # 6 Polarization: -25.06 SS G_CDS: -2.77 Total: -27.82 kcal Atomic # 7 Polarization: -38.47 SS G_CDS: 0.06 Total: -38.41 kcal Atomic # 14 Polarization: 21.67 SS G_CDS: -5.02 Total: 16.65 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -27.90 -10.50 -38.40 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000709978900.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.023 kcal (2) G-P(sol) polarization free energy of solvation -27.903 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.120 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.499 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.402 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.621 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds