Wall clock time and date at job start Mon Mar 30 2020 06:44:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86806 * 119.99701 * 2 1 4 4 H 1.48499 * 109.47164 * 239.99828 * 3 2 1 5 5 H 1.48495 * 109.46896 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.46711 * 119.99907 * 3 2 1 7 7 C 1.37876 * 120.00074 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99879 * 173.47677 * 7 2 1 9 9 C 1.50694 * 120.00252 * 353.47735 * 7 2 1 10 10 C 1.52999 * 115.54958 * 85.31582 * 9 7 2 11 11 N 1.46903 * 109.47312 * 65.04907 * 10 9 7 12 12 C 1.46898 * 111.00365 * 185.41917 * 11 10 9 13 13 H 1.08998 * 109.47353 * 34.98987 * 12 11 10 14 14 C 1.52948 * 109.47625 * 274.98247 * 12 11 10 15 15 C 1.52941 * 109.81931 * 177.01572 * 14 12 11 16 16 C 1.53181 * 109.45045 * 62.98799 * 15 14 12 17 17 C 1.53156 * 108.87902 * 303.42461 * 16 15 14 18 18 C 1.52806 * 117.75002 * 199.63389 * 17 16 15 19 19 C 1.52845 * 117.67549 * 268.52112 * 17 16 15 20 20 C 1.53159 * 115.00406 * 53.94673 * 17 16 15 21 21 C 1.52998 * 117.50058 * 230.98735 * 9 7 2 22 22 C 1.53006 * 117.49914 * 299.64485 * 9 7 2 23 23 H 0.97001 * 120.00709 * 359.97438 * 1 2 3 24 24 H 1.09003 * 109.47141 * 305.05175 * 10 9 7 25 25 H 1.09000 * 109.47382 * 185.04906 * 10 9 7 26 26 H 1.00899 * 110.99770 * 61.46908 * 11 10 9 27 27 H 1.09001 * 109.40873 * 297.12150 * 14 12 11 28 28 H 1.09003 * 109.41653 * 56.90611 * 14 12 11 29 29 H 1.09002 * 109.47595 * 302.98942 * 15 14 12 30 30 H 1.09003 * 109.47868 * 182.97953 * 15 14 12 31 31 H 1.09000 * 109.56743 * 183.60822 * 16 15 14 32 32 H 1.09001 * 109.66768 * 63.30354 * 16 15 14 33 33 H 1.08998 * 117.49914 * 215.10688 * 18 17 16 34 34 H 1.08996 * 117.50422 * 0.14864 * 18 17 16 35 35 H 1.09000 * 117.50460 * 359.71730 * 19 17 16 36 36 H 1.09003 * 117.50463 * 144.77852 * 19 17 16 37 37 H 1.08999 * 109.56692 * 186.23842 * 20 17 16 38 38 H 1.08998 * 109.56890 * 65.87331 * 20 17 16 39 39 H 1.09002 * 117.49911 * 215.00588 * 21 9 7 40 40 H 1.09003 * 117.49952 * 0.02562 * 21 9 7 41 41 H 1.08999 * 117.49448 * 359.97438 * 22 9 7 42 42 H 1.09003 * 117.49393 * 144.97527 * 22 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.1028 1.6965 -1.2125 5 1 1.2840 2.7464 0.0006 6 1 3.1027 1.6965 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0793 -1.1971 -0.1057 9 6 1.2584 -2.4948 0.1494 10 6 0.6991 -3.0866 -1.1459 11 7 1.8088 -3.4588 -2.0336 12 6 1.3099 -3.9118 -3.3389 13 1 0.4198 -3.3418 -3.6054 14 6 0.9594 -5.3986 -3.2628 15 6 0.3695 -5.8612 -4.5958 16 6 1.4209 -5.7086 -5.6993 17 6 1.8902 -4.2512 -5.7385 18 6 2.5708 -3.7570 -7.0142 19 6 1.1528 -3.2928 -6.6733 20 6 2.3915 -3.6964 -4.4018 21 6 1.7498 -3.4728 1.2184 22 6 0.4452 -2.7004 1.4290 23 1 -0.4851 0.8400 0.0004 24 1 0.0699 -2.3471 -1.6413 25 1 0.1063 -3.9717 -0.9148 26 1 2.3936 -4.1614 -1.6064 27 1 1.8605 -5.9726 -3.0467 28 1 0.2300 -5.5588 -2.4687 29 1 -0.5024 -5.2534 -4.8379 30 1 0.0730 -6.9073 -4.5186 31 1 0.9828 -5.9770 -6.6606 32 1 2.2695 -6.3600 -5.4901 33 1 3.3774 -3.0319 -6.9058 34 1 2.6845 -4.4684 -7.8321 35 1 0.3338 -3.6991 -7.2669 36 1 1.0267 -2.2625 -6.3406 37 1 2.5969 -2.6307 -4.5029 38 1 3.3016 -4.2192 -4.1078 39 1 1.6747 -4.5379 0.9989 40 1 2.6126 -3.1752 1.8145 41 1 0.4502 -1.8949 2.1633 42 1 -0.4885 -3.2570 1.3479 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000709978900.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:44:19 Heat of formation + Delta-G solvation = 14.499666 kcal Electronic energy + Delta-G solvation = -18762.895843 eV Core-core repulsion = 16128.647681 eV Total energy + Delta-G solvation = -2634.248162 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 249.179 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.47549 -38.70085 -36.64986 -34.07236 -33.79977 -30.59853 -28.26690 -27.56528 -25.74916 -23.38144 -23.09657 -22.78162 -21.71998 -20.94069 -19.51452 -18.01224 -16.77961 -16.43473 -16.26534 -15.87576 -15.49107 -15.21592 -14.95934 -14.49242 -14.11041 -13.96407 -13.64990 -13.44577 -13.08864 -12.85668 -12.77867 -12.59718 -12.36497 -12.32783 -12.06766 -12.01501 -11.89952 -11.71973 -11.45344 -11.22470 -10.80750 -10.71914 -10.45266 -10.31577 -9.90236 -8.94943 -8.03486 -6.09511 1.42597 1.43466 1.50388 2.47494 2.87679 3.26097 3.28983 3.62627 3.82333 3.85860 3.97305 4.11799 4.22865 4.26579 4.36397 4.44640 4.50095 4.58997 4.64284 4.69629 4.78832 4.80787 4.81824 4.97303 4.99534 5.04624 5.06280 5.08290 5.10764 5.22045 5.27269 5.31546 5.32743 5.35288 5.48478 5.55110 5.64660 5.76610 5.88999 6.41119 6.54302 6.81627 6.94007 7.55427 9.05565 Molecular weight = 249.18amu Principal moments of inertia in cm(-1) A = 0.022465 B = 0.006095 C = 0.005175 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1246.080061 B = 4592.985033 C = 5408.936375 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.914 5.914 2 C 0.020 3.980 3 Si 0.944 3.056 4 H -0.276 1.276 5 H -0.287 1.287 6 H -0.273 1.273 7 C -0.480 4.480 8 H 0.047 0.953 9 C 0.024 3.976 10 C 0.130 3.870 11 N -0.677 5.677 12 C 0.095 3.905 13 H 0.047 0.953 14 C -0.140 4.140 15 C -0.108 4.108 16 C -0.073 4.073 17 C -0.127 4.127 18 C -0.165 4.165 19 C -0.183 4.183 20 C -0.060 4.060 21 C -0.186 4.186 22 C -0.167 4.167 23 H 0.256 0.744 24 H 0.035 0.965 25 H 0.005 0.995 26 H 0.337 0.663 27 H 0.071 0.929 28 H 0.047 0.953 29 H 0.053 0.947 30 H 0.077 0.923 31 H 0.077 0.923 32 H 0.073 0.927 33 H 0.088 0.912 34 H 0.111 0.889 35 H 0.103 0.897 36 H 0.076 0.924 37 H 0.044 0.956 38 H 0.067 0.933 39 H 0.089 0.911 40 H 0.075 0.925 41 H 0.056 0.944 42 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.273 -12.057 -11.686 16.944 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.553 5.553 2 C -0.178 4.178 3 Si 0.770 3.230 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.198 1.198 7 C -0.518 4.518 8 H 0.065 0.935 9 C 0.023 3.977 10 C 0.000 4.000 11 N -0.306 5.306 12 C -0.015 4.015 13 H 0.065 0.935 14 C -0.179 4.179 15 C -0.146 4.146 16 C -0.110 4.110 17 C -0.128 4.128 18 C -0.202 4.202 19 C -0.220 4.220 20 C -0.099 4.099 21 C -0.223 4.223 22 C -0.205 4.205 23 H 0.064 0.936 24 H 0.053 0.947 25 H 0.023 0.977 26 H 0.155 0.845 27 H 0.089 0.911 28 H 0.066 0.934 29 H 0.072 0.928 30 H 0.095 0.905 31 H 0.095 0.905 32 H 0.092 0.908 33 H 0.107 0.893 34 H 0.129 0.871 35 H 0.122 0.878 36 H 0.095 0.905 37 H 0.063 0.937 38 H 0.086 0.914 39 H 0.108 0.892 40 H 0.094 0.906 41 H 0.075 0.925 42 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 2.231 -11.262 -11.882 16.522 hybrid contribution -0.279 0.619 0.601 0.907 sum 1.951 -10.643 -11.281 15.631 Atomic orbital electron populations 1.70106 1.06918 1.26637 1.51608 1.25588 0.95490 1.01602 0.95146 0.85846 0.78526 0.80047 0.78559 1.20186 1.21279 1.19816 1.20516 0.92501 0.90121 1.48657 0.93450 1.18960 0.98145 0.93975 0.86620 1.21122 0.90983 0.94731 0.93131 1.60244 1.21135 1.45694 1.03574 1.21505 0.96614 0.93786 0.89622 0.93472 1.22165 1.01043 0.96412 0.98299 1.21430 0.98097 1.01314 0.93804 1.21119 0.98452 0.92480 0.98949 1.21524 1.04423 0.95900 0.90934 1.23028 0.95271 1.03539 0.98339 1.23040 0.96149 0.99147 1.03682 1.20980 0.97520 0.99504 0.91851 1.22965 0.97042 0.96429 1.05890 1.22431 0.93488 1.01325 1.03290 0.93555 0.94687 0.97734 0.84491 0.91075 0.93400 0.92820 0.90451 0.90484 0.90791 0.89317 0.87082 0.87817 0.90544 0.93687 0.91390 0.89246 0.90593 0.92502 0.91163 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -53.81 12.92 21.45 0.28 -53.53 16 2 C 0.02 1.16 5.39 84.65 0.46 1.61 16 3 Si 0.94 45.13 29.54 68.60 2.03 47.16 16 4 H -0.28 -13.07 7.11 99.48 0.71 -12.36 16 5 H -0.29 -13.51 7.11 99.48 0.71 -12.80 16 6 H -0.27 -12.68 7.11 99.48 0.71 -11.97 16 7 C -0.48 -26.82 8.74 25.60 0.22 -26.60 16 8 H 0.05 2.68 7.82 -2.91 -0.02 2.66 16 9 C 0.02 1.17 1.55 -52.93 -0.08 1.09 16 10 C 0.13 5.89 5.33 86.30 0.46 6.35 16 11 N -0.68 -26.56 6.13 -491.35 -3.01 -29.57 16 12 C 0.09 3.09 2.47 44.96 0.11 3.20 16 13 H 0.05 1.76 7.71 -2.39 -0.02 1.74 16 14 C -0.14 -3.65 5.08 30.56 0.16 -3.49 16 15 C -0.11 -2.28 5.93 30.63 0.18 -2.10 16 16 C -0.07 -1.38 5.67 30.71 0.17 -1.21 16 17 C -0.13 -2.94 1.97 -52.19 -0.10 -3.04 16 18 C -0.16 -3.32 9.99 30.54 0.31 -3.01 16 19 C -0.18 -4.17 9.93 30.56 0.30 -3.87 16 20 C -0.06 -1.77 5.28 30.71 0.16 -1.60 16 21 C -0.19 -7.91 9.96 30.62 0.30 -7.61 16 22 C -0.17 -7.99 9.42 30.62 0.29 -7.70 16 23 H 0.26 14.51 8.31 -92.71 -0.77 13.74 16 24 H 0.03 1.84 7.92 -2.39 -0.02 1.83 16 25 H 0.00 0.20 7.46 -2.39 -0.02 0.18 16 26 H 0.34 12.12 8.54 -89.69 -0.77 11.35 16 27 H 0.07 1.70 8.14 -2.39 -0.02 1.68 16 28 H 0.05 1.34 7.48 -2.39 -0.02 1.33 16 29 H 0.05 1.22 8.14 -2.39 -0.02 1.21 16 30 H 0.08 1.35 8.14 -2.39 -0.02 1.33 16 31 H 0.08 1.22 8.09 -2.39 -0.02 1.20 16 32 H 0.07 1.29 8.14 -2.39 -0.02 1.27 16 33 H 0.09 1.86 8.14 -2.39 -0.02 1.84 16 34 H 0.11 1.77 8.14 -2.39 -0.02 1.75 16 35 H 0.10 2.03 8.14 -2.39 -0.02 2.01 16 36 H 0.08 2.00 8.14 -2.39 -0.02 1.98 16 37 H 0.04 1.51 8.09 -2.39 -0.02 1.49 16 38 H 0.07 1.90 8.14 -2.39 -0.02 1.88 16 39 H 0.09 3.26 8.14 -2.39 -0.02 3.24 16 40 H 0.08 3.22 8.14 -2.39 -0.02 3.20 16 41 H 0.06 2.95 8.14 -2.39 -0.02 2.93 16 42 H 0.07 3.15 8.14 -2.39 -0.02 3.13 16 Total: -1.00 -60.49 333.92 2.43 -58.06 By element: Atomic # 1 Polarization: 25.65 SS G_CDS: 0.20 Total: 25.85 kcal Atomic # 6 Polarization: -50.91 SS G_CDS: 2.94 Total: -47.97 kcal Atomic # 7 Polarization: -80.37 SS G_CDS: -2.73 Total: -83.10 kcal Atomic # 14 Polarization: 45.13 SS G_CDS: 2.03 Total: 47.16 kcal Total: -60.49 2.43 -58.06 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000709978900.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.559 kcal (2) G-P(sol) polarization free energy of solvation -60.492 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.066 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.433 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.059 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.500 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds