Wall clock time and date at job start Mon Mar 30 2020 06:44:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86800 * 119.99868 * 2 1 4 4 H 1.48501 * 109.47374 * 269.99820 * 3 2 1 5 5 H 1.48497 * 109.47324 * 29.99974 * 3 2 1 6 6 H 1.48501 * 109.47217 * 150.00373 * 3 2 1 7 7 C 1.37874 * 120.00107 * 180.02562 * 2 1 3 8 8 H 1.08006 * 120.00252 * 173.33730 * 7 2 1 9 9 C 1.50699 * 120.00163 * 353.33689 * 7 2 1 10 10 C 1.52994 * 115.55162 * 85.25818 * 9 7 2 11 11 N 1.46901 * 109.46885 * 39.57945 * 10 9 7 12 12 C 1.46905 * 110.99894 * 174.68491 * 11 10 9 13 13 H 1.08993 * 109.47387 * 325.00031 * 12 11 10 14 14 C 1.52949 * 109.47254 * 85.01160 * 12 11 10 15 15 C 1.52947 * 109.81913 * 182.97903 * 14 12 11 16 16 C 1.53182 * 109.45149 * 297.01730 * 15 14 12 17 17 C 1.53150 * 108.88354 * 56.56688 * 16 15 14 18 18 C 1.52846 * 117.67228 * 91.48259 * 17 16 15 19 19 C 1.52801 * 117.75047 * 160.36218 * 17 16 15 20 20 C 1.53156 * 115.00686 * 306.06212 * 17 16 15 21 21 C 1.53000 * 117.51721 * 230.96766 * 9 7 2 22 22 C 1.52992 * 60.00110 * 107.47598 * 21 9 7 23 23 H 0.97001 * 120.00173 * 5.06611 * 1 2 3 24 24 H 1.08993 * 109.47749 * 279.57683 * 10 9 7 25 25 H 1.09000 * 109.47213 * 159.57210 * 10 9 7 26 26 H 1.00902 * 110.99872 * 298.63736 * 11 10 9 27 27 H 1.09003 * 109.41143 * 303.08629 * 14 12 11 28 28 H 1.08997 * 109.41656 * 62.87367 * 14 12 11 29 29 H 1.09000 * 109.47680 * 177.01769 * 15 14 12 30 30 H 1.09004 * 109.47252 * 57.00878 * 15 14 12 31 31 H 1.09000 * 109.56635 * 296.74905 * 16 15 14 32 32 H 1.08996 * 109.56760 * 176.39361 * 16 15 14 33 33 H 1.09001 * 117.50662 * 215.22088 * 18 17 16 34 34 H 1.08997 * 117.50195 * 0.28118 * 18 17 16 35 35 H 1.09000 * 117.50426 * 359.86528 * 19 17 16 36 36 H 1.09004 * 117.49772 * 144.89801 * 19 17 16 37 37 H 1.09004 * 109.56551 * 294.12050 * 20 17 16 38 38 H 1.08997 * 109.66848 * 173.82334 * 20 17 16 39 39 H 1.09003 * 117.49849 * 214.97153 * 21 9 7 40 40 H 1.09000 * 117.49691 * 359.97438 * 21 9 7 41 41 H 1.09003 * 117.49931 * 252.50694 * 22 21 9 42 42 H 1.09005 * 117.50082 * 107.49090 * 22 21 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 3.0791 -1.1971 -0.1091 9 6 1.2587 -2.4948 0.1503 10 6 0.6954 -3.0864 -1.1433 11 7 1.6646 -2.8970 -2.2309 12 6 1.2134 -3.5633 -3.4600 13 1 0.6878 -4.4829 -3.2028 14 6 0.2708 -2.6345 -4.2269 15 6 -0.2622 -3.3481 -5.4703 16 6 0.9028 -3.6736 -6.4103 17 6 1.9348 -4.5109 -5.6491 18 6 1.8023 -6.0322 -5.7147 19 6 2.9324 -5.3279 -6.4688 20 6 2.4257 -3.8957 -4.3352 21 6 1.7524 -3.4729 1.2182 22 6 0.4493 -2.7004 1.4323 23 1 -0.4850 0.8368 -0.0742 24 1 -0.2378 -2.5836 -1.3967 25 1 0.5084 -4.1512 -1.0047 26 1 1.8381 -1.9165 -2.3940 27 1 -0.5639 -2.3544 -3.5842 28 1 0.8117 -1.7375 -4.5280 29 1 -0.9736 -2.7012 -5.9837 30 1 -0.7591 -4.2720 -5.1741 31 1 1.3649 -2.7479 -6.7530 32 1 0.5341 -4.2384 -7.2665 33 1 2.0693 -6.5998 -4.8232 34 1 0.9820 -6.4410 -6.3046 35 1 2.8556 -5.2735 -7.5548 36 1 3.9428 -5.4322 -6.0734 37 1 2.9850 -2.9840 -4.5456 38 1 3.0680 -4.6061 -3.8149 39 1 1.6759 -4.5380 0.9991 40 1 2.6170 -3.1758 1.8117 41 1 0.4565 -1.8949 2.1667 42 1 -0.4846 -3.2571 1.3540 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000709978901.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:44:23 Heat of formation + Delta-G solvation = 26.536452 kcal Electronic energy + Delta-G solvation = -18844.213389 eV Core-core repulsion = 16210.487181 eV Total energy + Delta-G solvation = -2633.726208 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 249.179 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -39.33157 -36.90749 -35.24841 -32.68150 -31.87816 -29.24491 -27.11995 -25.48189 -24.05537 -22.46496 -21.79449 -20.96209 -20.40476 -19.12223 -18.34641 -15.92996 -15.33415 -15.18220 -14.58202 -14.32072 -14.21929 -13.69807 -13.51909 -13.08129 -12.67876 -12.48085 -12.23087 -12.02199 -11.48244 -11.34657 -11.21655 -10.94592 -10.92523 -10.81197 -10.73902 -10.52901 -10.41300 -10.21824 -10.01201 -9.81930 -9.49383 -9.23535 -8.74729 -8.39371 -8.00804 -7.25031 -5.98513 -4.02575 3.30013 3.38090 3.42400 3.83630 4.43082 4.64688 4.83827 4.91455 5.02935 5.26374 5.30960 5.32614 5.40364 5.51619 5.61433 5.66789 5.70402 5.81507 5.89774 5.93123 6.06374 6.11877 6.17112 6.20362 6.24838 6.36936 6.39752 6.46393 6.54338 6.62421 6.66135 6.73572 6.85589 6.88576 7.05565 7.19490 7.51181 7.57610 7.92961 8.19117 8.50138 8.59982 9.00281 9.61265 11.09497 Molecular weight = 249.18amu Principal moments of inertia in cm(-1) A = 0.024119 B = 0.005949 C = 0.005453 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1160.640818 B = 4705.891479 C = 5133.600235 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.882 5.882 2 C 0.068 3.932 3 Si 0.885 3.115 4 H -0.281 1.281 5 H -0.288 1.288 6 H -0.274 1.274 7 C -0.481 4.481 8 H 0.061 0.939 9 C 0.051 3.949 10 C 0.109 3.891 11 N -0.671 5.671 12 C 0.091 3.909 13 H 0.065 0.935 14 C -0.148 4.148 15 C -0.111 4.111 16 C -0.079 4.079 17 C -0.116 4.116 18 C -0.176 4.176 19 C -0.179 4.179 20 C -0.066 4.066 21 C -0.208 4.208 22 C -0.164 4.164 23 H 0.258 0.742 24 H 0.027 0.973 25 H 0.034 0.966 26 H 0.353 0.647 27 H 0.063 0.937 28 H 0.061 0.939 29 H 0.056 0.944 30 H 0.059 0.941 31 H 0.064 0.936 32 H 0.057 0.943 33 H 0.092 0.908 34 H 0.088 0.912 35 H 0.088 0.912 36 H 0.092 0.908 37 H 0.065 0.935 38 H 0.066 0.934 39 H 0.062 0.938 40 H 0.073 0.927 41 H 0.078 0.922 42 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.874 -7.836 -11.365 13.832 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.520 5.520 2 C -0.134 4.134 3 Si 0.713 3.287 4 H -0.208 1.208 5 H -0.214 1.214 6 H -0.199 1.199 7 C -0.519 4.519 8 H 0.079 0.921 9 C 0.051 3.949 10 C -0.020 4.020 11 N -0.302 5.302 12 C -0.019 4.019 13 H 0.083 0.917 14 C -0.187 4.187 15 C -0.149 4.149 16 C -0.117 4.117 17 C -0.116 4.116 18 C -0.213 4.213 19 C -0.216 4.216 20 C -0.104 4.104 21 C -0.245 4.245 22 C -0.202 4.202 23 H 0.068 0.932 24 H 0.046 0.954 25 H 0.053 0.947 26 H 0.174 0.826 27 H 0.081 0.919 28 H 0.079 0.921 29 H 0.075 0.925 30 H 0.078 0.922 31 H 0.083 0.917 32 H 0.075 0.925 33 H 0.111 0.889 34 H 0.106 0.894 35 H 0.107 0.893 36 H 0.110 0.890 37 H 0.083 0.917 38 H 0.085 0.915 39 H 0.081 0.919 40 H 0.092 0.908 41 H 0.097 0.903 42 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 1.114 -8.216 -11.066 13.827 hybrid contribution -0.415 1.519 -0.269 1.598 sum 0.699 -6.696 -11.335 13.184 Atomic orbital electron populations 1.69999 1.05809 1.26450 1.49693 1.24992 0.94752 0.98694 0.94996 0.86696 0.80051 0.83830 0.78081 1.20763 1.21416 1.19855 1.20400 0.93143 0.88526 1.49876 0.92090 1.18800 0.96958 0.93564 0.85624 1.21355 0.92733 0.96123 0.91759 1.60493 1.45687 1.20146 1.03918 1.21488 0.93374 0.96866 0.90220 0.91674 1.22261 1.00317 0.99311 0.96855 1.21454 0.97002 1.00213 0.96263 1.21134 0.94854 0.98995 0.96696 1.21542 0.99752 0.92299 0.98035 1.22989 1.00714 0.95023 1.02601 1.22958 0.95264 1.05224 0.98201 1.21090 0.97417 1.00385 0.91530 1.22985 0.98001 0.95621 1.07938 1.22516 0.92192 1.01294 1.04183 0.93235 0.95437 0.94722 0.82621 0.91868 0.92068 0.92515 0.92246 0.91700 0.92462 0.88916 0.89354 0.89317 0.88963 0.91674 0.91544 0.91948 0.90815 0.90324 0.92272 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -24.55 12.93 55.43 0.72 -23.83 16 2 C 0.07 1.82 5.39 -17.82 -0.10 1.73 16 3 Si 0.89 20.89 29.55 -169.99 -5.02 15.87 16 4 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 5 H -0.29 -6.86 7.11 56.52 0.40 -6.45 16 6 H -0.27 -6.46 7.11 56.52 0.40 -6.05 16 7 C -0.48 -12.81 7.47 -34.44 -0.26 -13.07 16 8 H 0.06 1.66 7.82 -52.48 -0.41 1.25 16 9 C 0.05 1.26 1.76 -155.67 -0.27 0.99 16 10 C 0.11 2.45 5.63 -3.83 -0.02 2.43 16 11 N -0.67 -13.67 6.01 -106.66 -0.64 -14.31 16 12 C 0.09 1.52 2.47 -67.65 -0.17 1.35 16 13 H 0.06 1.11 7.71 -51.93 -0.40 0.71 16 14 C -0.15 -2.34 5.08 -26.78 -0.14 -2.47 16 15 C -0.11 -1.43 5.93 -26.66 -0.16 -1.59 16 16 C -0.08 -0.94 5.67 -26.56 -0.15 -1.09 16 17 C -0.12 -1.43 1.97 -154.53 -0.31 -1.74 16 18 C -0.18 -1.98 9.93 -26.80 -0.27 -2.25 16 19 C -0.18 -1.95 9.99 -26.82 -0.27 -2.21 16 20 C -0.07 -0.97 5.28 -26.56 -0.14 -1.11 16 21 C -0.21 -4.71 9.88 -26.74 -0.26 -4.98 16 22 C -0.16 -3.93 9.46 -26.74 -0.25 -4.18 16 23 H 0.26 6.93 8.32 -40.82 -0.34 6.59 16 24 H 0.03 0.67 7.51 -51.93 -0.39 0.28 16 25 H 0.03 0.74 7.73 -51.93 -0.40 0.34 16 26 H 0.35 7.79 7.46 -39.29 -0.29 7.50 16 27 H 0.06 1.12 7.48 -51.93 -0.39 0.73 16 28 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 29 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 30 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 31 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 32 H 0.06 0.60 8.09 -51.93 -0.42 0.18 16 33 H 0.09 1.06 8.14 -51.93 -0.42 0.64 16 34 H 0.09 0.91 8.14 -51.93 -0.42 0.49 16 35 H 0.09 0.86 8.14 -51.93 -0.42 0.44 16 36 H 0.09 0.98 8.14 -51.93 -0.42 0.56 16 37 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 38 H 0.07 1.01 8.10 -51.93 -0.42 0.59 16 39 H 0.06 1.30 8.08 -51.93 -0.42 0.88 16 40 H 0.07 1.66 8.14 -51.93 -0.42 1.24 16 41 H 0.08 2.01 8.14 -51.93 -0.42 1.59 16 42 H 0.06 1.34 8.14 -51.93 -0.42 0.92 16 LS Contribution 331.72 15.07 5.00 5.00 Total: -1.00 -26.71 331.72 -10.46 -37.17 By element: Atomic # 1 Polarization: 16.04 SS G_CDS: -7.75 Total: 8.29 kcal Atomic # 6 Polarization: -25.43 SS G_CDS: -2.76 Total: -28.19 kcal Atomic # 7 Polarization: -38.21 SS G_CDS: 0.08 Total: -38.14 kcal Atomic # 14 Polarization: 20.89 SS G_CDS: -5.02 Total: 15.87 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -26.71 -10.46 -37.17 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000709978901.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.704 kcal (2) G-P(sol) polarization free energy of solvation -26.710 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.995 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.458 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.168 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.536 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds