Wall clock time and date at job start Mon Mar 30 2020 06:44:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86800 * 119.99868 * 2 1 4 4 H 1.48501 * 109.47374 * 269.99820 * 3 2 1 5 5 H 1.48497 * 109.47324 * 29.99974 * 3 2 1 6 6 H 1.48501 * 109.47217 * 150.00373 * 3 2 1 7 7 C 1.37874 * 120.00107 * 180.02562 * 2 1 3 8 8 H 1.08006 * 120.00252 * 173.33730 * 7 2 1 9 9 C 1.50699 * 120.00163 * 353.33689 * 7 2 1 10 10 C 1.52994 * 115.55162 * 85.25818 * 9 7 2 11 11 N 1.46901 * 109.46885 * 39.57945 * 10 9 7 12 12 C 1.46905 * 110.99894 * 174.68491 * 11 10 9 13 13 H 1.08993 * 109.47387 * 325.00031 * 12 11 10 14 14 C 1.52949 * 109.47254 * 85.01160 * 12 11 10 15 15 C 1.52947 * 109.81913 * 182.97903 * 14 12 11 16 16 C 1.53182 * 109.45149 * 297.01730 * 15 14 12 17 17 C 1.53150 * 108.88354 * 56.56688 * 16 15 14 18 18 C 1.52846 * 117.67228 * 91.48259 * 17 16 15 19 19 C 1.52801 * 117.75047 * 160.36218 * 17 16 15 20 20 C 1.53156 * 115.00686 * 306.06212 * 17 16 15 21 21 C 1.53000 * 117.51721 * 230.96766 * 9 7 2 22 22 C 1.52992 * 60.00110 * 107.47598 * 21 9 7 23 23 H 0.97001 * 120.00173 * 5.06611 * 1 2 3 24 24 H 1.08993 * 109.47749 * 279.57683 * 10 9 7 25 25 H 1.09000 * 109.47213 * 159.57210 * 10 9 7 26 26 H 1.00902 * 110.99872 * 298.63736 * 11 10 9 27 27 H 1.09003 * 109.41143 * 303.08629 * 14 12 11 28 28 H 1.08997 * 109.41656 * 62.87367 * 14 12 11 29 29 H 1.09000 * 109.47680 * 177.01769 * 15 14 12 30 30 H 1.09004 * 109.47252 * 57.00878 * 15 14 12 31 31 H 1.09000 * 109.56635 * 296.74905 * 16 15 14 32 32 H 1.08996 * 109.56760 * 176.39361 * 16 15 14 33 33 H 1.09001 * 117.50662 * 215.22088 * 18 17 16 34 34 H 1.08997 * 117.50195 * 0.28118 * 18 17 16 35 35 H 1.09000 * 117.50426 * 359.86528 * 19 17 16 36 36 H 1.09004 * 117.49772 * 144.89801 * 19 17 16 37 37 H 1.09004 * 109.56551 * 294.12050 * 20 17 16 38 38 H 1.08997 * 109.66848 * 173.82334 * 20 17 16 39 39 H 1.09003 * 117.49849 * 214.97153 * 21 9 7 40 40 H 1.09000 * 117.49691 * 359.97438 * 21 9 7 41 41 H 1.09003 * 117.49931 * 252.50694 * 22 21 9 42 42 H 1.09005 * 117.50082 * 107.49090 * 22 21 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 3.0791 -1.1971 -0.1091 9 6 1.2587 -2.4948 0.1503 10 6 0.6954 -3.0864 -1.1433 11 7 1.6646 -2.8970 -2.2309 12 6 1.2134 -3.5633 -3.4600 13 1 0.6878 -4.4829 -3.2028 14 6 0.2708 -2.6345 -4.2269 15 6 -0.2622 -3.3481 -5.4703 16 6 0.9028 -3.6736 -6.4103 17 6 1.9348 -4.5109 -5.6491 18 6 1.8023 -6.0322 -5.7147 19 6 2.9324 -5.3279 -6.4688 20 6 2.4257 -3.8957 -4.3352 21 6 1.7524 -3.4729 1.2182 22 6 0.4493 -2.7004 1.4323 23 1 -0.4850 0.8368 -0.0742 24 1 -0.2378 -2.5836 -1.3967 25 1 0.5084 -4.1512 -1.0047 26 1 1.8381 -1.9165 -2.3940 27 1 -0.5639 -2.3544 -3.5842 28 1 0.8117 -1.7375 -4.5280 29 1 -0.9736 -2.7012 -5.9837 30 1 -0.7591 -4.2720 -5.1741 31 1 1.3649 -2.7479 -6.7530 32 1 0.5341 -4.2384 -7.2665 33 1 2.0693 -6.5998 -4.8232 34 1 0.9820 -6.4410 -6.3046 35 1 2.8556 -5.2735 -7.5548 36 1 3.9428 -5.4322 -6.0734 37 1 2.9850 -2.9840 -4.5456 38 1 3.0680 -4.6061 -3.8149 39 1 1.6759 -4.5380 0.9991 40 1 2.6170 -3.1758 1.8117 41 1 0.4565 -1.8949 2.1667 42 1 -0.4846 -3.2571 1.3540 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000709978901.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:44:23 Heat of formation + Delta-G solvation = 13.871959 kcal Electronic energy + Delta-G solvation = -18844.762562 eV Core-core repulsion = 16210.487181 eV Total energy + Delta-G solvation = -2634.275381 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 249.179 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.44430 -38.65266 -36.61453 -34.00174 -33.89993 -30.60539 -28.24113 -27.50189 -25.73228 -23.34618 -22.97978 -22.80466 -21.70686 -20.97602 -19.48395 -17.86705 -16.65249 -16.54884 -16.23083 -15.78371 -15.59087 -15.31454 -14.95788 -14.30878 -14.17781 -13.90343 -13.53422 -13.41809 -13.12452 -12.91289 -12.84350 -12.55246 -12.32132 -12.30555 -12.06146 -11.98348 -11.87570 -11.73235 -11.42528 -11.19228 -10.78871 -10.73961 -10.45432 -10.31090 -9.89921 -8.91730 -8.05296 -6.14243 1.41093 1.44488 1.53155 2.44959 2.91610 3.21999 3.37820 3.63448 3.84570 3.86853 3.99016 4.14973 4.25214 4.27876 4.39470 4.42674 4.50922 4.62565 4.66021 4.73076 4.78055 4.85693 4.94021 5.00397 5.01676 5.05793 5.07967 5.09818 5.13160 5.23820 5.27094 5.32354 5.35705 5.38010 5.48537 5.54550 5.65651 5.65992 5.82121 6.43605 6.61825 6.77677 6.93220 7.51972 9.02127 Molecular weight = 249.18amu Principal moments of inertia in cm(-1) A = 0.024119 B = 0.005949 C = 0.005453 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1160.640818 B = 4705.891479 C = 5133.600235 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.909 5.909 2 C 0.028 3.972 3 Si 0.943 3.057 4 H -0.275 1.275 5 H -0.289 1.289 6 H -0.272 1.272 7 C -0.488 4.488 8 H 0.050 0.950 9 C 0.024 3.976 10 C 0.124 3.876 11 N -0.675 5.675 12 C 0.093 3.907 13 H 0.062 0.938 14 C -0.142 4.142 15 C -0.106 4.106 16 C -0.074 4.074 17 C -0.131 4.131 18 C -0.173 4.173 19 C -0.167 4.167 20 C -0.059 4.059 21 C -0.188 4.188 22 C -0.168 4.168 23 H 0.257 0.743 24 H 0.000 1.000 25 H 0.046 0.954 26 H 0.340 0.660 27 H 0.036 0.964 28 H 0.052 0.948 29 H 0.067 0.933 30 H 0.062 0.938 31 H 0.064 0.936 32 H 0.079 0.921 33 H 0.087 0.913 34 H 0.102 0.898 35 H 0.106 0.894 36 H 0.092 0.908 37 H 0.056 0.944 38 H 0.060 0.940 39 H 0.086 0.914 40 H 0.072 0.928 41 H 0.056 0.944 42 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.441 -8.843 -12.988 15.779 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.547 5.547 2 C -0.172 4.172 3 Si 0.769 3.231 4 H -0.200 1.200 5 H -0.215 1.215 6 H -0.197 1.197 7 C -0.526 4.526 8 H 0.068 0.932 9 C 0.023 3.977 10 C -0.005 4.005 11 N -0.305 5.305 12 C -0.017 4.017 13 H 0.081 0.919 14 C -0.182 4.182 15 C -0.144 4.144 16 C -0.111 4.111 17 C -0.132 4.132 18 C -0.210 4.210 19 C -0.204 4.204 20 C -0.097 4.097 21 C -0.225 4.225 22 C -0.206 4.206 23 H 0.066 0.934 24 H 0.018 0.982 25 H 0.064 0.936 26 H 0.160 0.840 27 H 0.055 0.945 28 H 0.071 0.929 29 H 0.086 0.914 30 H 0.081 0.919 31 H 0.082 0.918 32 H 0.098 0.902 33 H 0.106 0.894 34 H 0.121 0.879 35 H 0.124 0.876 36 H 0.111 0.889 37 H 0.074 0.926 38 H 0.078 0.922 39 H 0.104 0.896 40 H 0.091 0.909 41 H 0.075 0.925 42 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 1.692 -9.240 -12.697 15.794 hybrid contribution -0.574 1.796 0.265 1.904 sum 1.118 -7.444 -12.431 14.533 Atomic orbital electron populations 1.70103 1.06956 1.26957 1.50706 1.25579 0.95390 1.01418 0.94831 0.85787 0.78775 0.80284 0.78209 1.20042 1.21541 1.19699 1.20535 0.92725 0.89792 1.49568 0.93164 1.19007 0.97876 0.93945 0.86857 1.21122 0.91780 0.96053 0.91565 1.60511 1.45376 1.19328 1.05240 1.21556 0.94595 0.96343 0.89207 0.91924 1.22153 0.99047 0.99150 0.97809 1.21417 0.97782 1.00115 0.95053 1.21111 0.93980 0.99228 0.96826 1.21458 1.01252 0.93156 0.97323 1.23052 1.01402 0.93786 1.02730 1.23030 0.94967 1.03354 0.99005 1.20966 0.96151 1.00017 0.92540 1.22983 0.96949 0.96464 1.06080 1.22421 0.93436 1.01288 1.03457 0.93406 0.98157 0.93576 0.84046 0.94526 0.92904 0.91414 0.91904 0.91772 0.90215 0.89426 0.87916 0.87561 0.88933 0.92577 0.92163 0.89586 0.90893 0.92534 0.91210 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -51.52 12.93 21.45 0.28 -51.24 16 2 C 0.03 1.49 5.39 84.65 0.46 1.95 16 3 Si 0.94 43.29 29.55 68.60 2.03 45.32 16 4 H -0.27 -12.24 7.11 99.48 0.71 -11.53 16 5 H -0.29 -13.27 7.11 99.48 0.71 -12.57 16 6 H -0.27 -12.34 7.11 99.48 0.71 -11.63 16 7 C -0.49 -26.30 7.47 25.60 0.19 -26.11 16 8 H 0.05 2.76 7.82 -2.91 -0.02 2.74 16 9 C 0.02 1.18 1.76 -52.93 -0.09 1.09 16 10 C 0.12 5.64 5.63 86.30 0.49 6.13 16 11 N -0.67 -27.83 6.01 -491.37 -2.95 -30.78 16 12 C 0.09 3.09 2.47 44.96 0.11 3.21 16 13 H 0.06 2.11 7.71 -2.39 -0.02 2.09 16 14 C -0.14 -4.51 5.08 30.56 0.16 -4.36 16 15 C -0.11 -2.55 5.93 30.64 0.18 -2.37 16 16 C -0.07 -1.55 5.67 30.71 0.17 -1.38 16 17 C -0.13 -2.96 1.97 -52.20 -0.10 -3.06 16 18 C -0.17 -3.41 9.93 30.55 0.30 -3.10 16 19 C -0.17 -3.11 9.99 30.54 0.31 -2.81 16 20 C -0.06 -1.68 5.28 30.71 0.16 -1.52 16 21 C -0.19 -8.32 9.88 30.59 0.30 -8.02 16 22 C -0.17 -8.09 9.46 30.59 0.29 -7.80 16 23 H 0.26 14.04 8.32 -92.71 -0.77 13.27 16 24 H 0.00 0.01 7.51 -2.39 -0.02 0.00 16 25 H 0.05 1.95 7.73 -2.39 -0.02 1.93 16 26 H 0.34 15.44 7.46 -89.69 -0.67 14.77 16 27 H 0.04 1.33 7.48 -2.39 -0.02 1.31 16 28 H 0.05 1.73 8.14 -2.39 -0.02 1.72 16 29 H 0.07 1.50 8.14 -2.39 -0.02 1.48 16 30 H 0.06 1.49 8.14 -2.38 -0.02 1.47 16 31 H 0.06 1.36 8.14 -2.39 -0.02 1.34 16 32 H 0.08 1.36 8.09 -2.39 -0.02 1.34 16 33 H 0.09 1.82 8.14 -2.39 -0.02 1.80 16 34 H 0.10 1.75 8.14 -2.39 -0.02 1.73 16 35 H 0.11 1.64 8.14 -2.39 -0.02 1.62 16 36 H 0.09 1.73 8.14 -2.39 -0.02 1.71 16 37 H 0.06 1.68 8.14 -2.38 -0.02 1.66 16 38 H 0.06 1.77 8.10 -2.39 -0.02 1.76 16 39 H 0.09 3.39 8.08 -2.39 -0.02 3.37 16 40 H 0.07 3.22 8.14 -2.39 -0.02 3.20 16 41 H 0.06 2.94 8.14 -2.39 -0.02 2.92 16 42 H 0.07 3.15 8.14 -2.38 -0.02 3.14 16 Total: -1.00 -56.79 331.72 2.57 -54.22 By element: Atomic # 1 Polarization: 30.33 SS G_CDS: 0.29 Total: 30.62 kcal Atomic # 6 Polarization: -51.07 SS G_CDS: 2.92 Total: -48.15 kcal Atomic # 7 Polarization: -79.34 SS G_CDS: -2.68 Total: -82.02 kcal Atomic # 14 Polarization: 43.29 SS G_CDS: 2.03 Total: 45.32 kcal Total: -56.79 2.57 -54.22 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000709978901.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.094 kcal (2) G-P(sol) polarization free energy of solvation -56.788 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.305 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.567 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.222 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.872 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds