Wall clock time and date at job start Mon Mar 30 2020 06:12:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31503 * 1 3 3 Si 1.86797 * 120.00170 * 2 1 4 4 H 1.48500 * 109.47149 * 0.02562 * 3 2 1 5 5 H 1.48497 * 109.47424 * 240.00177 * 3 2 1 6 6 H 1.48505 * 109.47421 * 120.00145 * 3 2 1 7 7 C 1.37880 * 120.00373 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00503 * 187.22191 * 7 2 1 9 9 C 1.50703 * 119.99382 * 7.21648 * 7 2 1 10 10 C 1.53000 * 115.55295 * 275.21295 * 9 7 2 11 11 N 1.46896 * 109.46835 * 301.90685 * 10 9 7 12 12 C 1.46907 * 110.99684 * 184.28273 * 11 10 9 13 13 H 1.08997 * 112.88199 * 25.33778 * 12 11 10 14 14 C 1.53894 * 113.65600 * 254.01165 * 12 11 10 15 15 C 1.53485 * 86.50000 * 271.06680 * 14 12 11 16 16 H 1.09007 * 111.88277 * 86.35975 * 15 14 12 17 17 C 1.51409 * 114.48038 * 214.56046 * 15 14 12 18 18 C 1.52585 * 111.53519 * 63.18095 * 17 15 14 19 19 C 1.53112 * 108.83223 * 56.90644 * 18 17 15 20 20 C 1.52524 * 108.92688 * 291.93563 * 19 18 17 21 21 C 1.51866 * 111.46799 * 57.58482 * 20 19 18 22 22 H 1.09003 * 112.16778 * 94.97323 * 21 20 19 23 23 C 1.53002 * 117.49624 * 129.54393 * 9 7 2 24 24 C 1.53005 * 117.49801 * 60.88768 * 9 7 2 25 25 H 0.97000 * 120.00280 * 175.40125 * 1 2 3 26 26 H 1.08995 * 109.47032 * 61.90982 * 10 9 7 27 27 H 1.08994 * 109.47126 * 181.90796 * 10 9 7 28 28 H 1.00895 * 111.00619 * 308.24028 * 11 10 9 29 29 H 1.08999 * 113.70988 * 25.46570 * 14 12 11 30 30 H 1.09002 * 113.70196 * 156.66946 * 14 12 11 31 31 H 1.09004 * 109.06802 * 183.70410 * 17 15 14 32 32 H 1.08994 * 109.07204 * 302.72108 * 17 15 14 33 33 H 1.09005 * 109.57578 * 176.70904 * 18 17 15 34 34 H 1.09003 * 109.58043 * 297.09900 * 18 17 15 35 35 H 1.09001 * 109.56125 * 51.76224 * 19 18 17 36 36 H 1.09001 * 109.56338 * 172.10237 * 19 18 17 37 37 H 1.08996 * 109.09764 * 178.01489 * 20 19 18 38 38 H 1.09000 * 109.09486 * 297.03506 * 20 19 18 39 39 H 1.09010 * 117.50040 * 0.02562 * 23 9 7 40 40 H 1.09005 * 117.49950 * 145.01609 * 23 9 7 41 41 H 1.09000 * 117.49636 * 214.97266 * 24 9 7 42 42 H 1.08998 * 117.49769 * 359.97438 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3150 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 1.2841 2.7464 0.0006 5 1 3.1028 1.6964 -1.2125 6 1 3.1029 1.6964 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0781 -1.1978 0.1170 9 6 1.2599 -2.4939 -0.1651 10 6 0.6761 -3.0871 1.1187 11 7 1.7550 -3.3074 2.0910 12 6 1.2472 -3.9707 3.2995 13 1 0.3471 -4.5569 3.1147 14 6 1.1360 -3.0355 4.5167 15 6 2.5856 -3.4286 4.8326 16 1 3.3016 -2.8002 4.3028 17 6 2.9050 -3.5128 6.3102 18 6 2.0882 -4.6025 6.9986 19 6 2.3539 -5.9371 6.2967 20 6 1.7576 -5.8856 4.8938 21 6 2.3305 -4.7327 4.0883 22 1 3.1712 -5.0424 3.4675 23 6 1.7700 -3.4708 -1.2264 24 6 0.4703 -2.6967 -1.4598 25 1 -0.4850 -0.8373 -0.0674 26 1 -0.0556 -2.3966 1.5380 27 1 0.1914 -4.0368 0.8925 28 1 2.5105 -3.8345 1.6796 29 1 1.0143 -1.9850 4.2526 30 1 0.4177 -3.3726 5.2640 31 1 3.9657 -3.7317 6.4334 32 1 2.6828 -2.5537 6.7779 33 1 2.3845 -4.6748 8.0451 34 1 1.0275 -4.3602 6.9332 35 1 3.4286 -6.1070 6.2304 36 1 1.8891 -6.7453 6.8614 37 1 1.9758 -6.8213 4.3791 38 1 0.6769 -5.7654 4.9699 39 1 2.6445 -3.1735 -1.8053 40 1 1.6895 -4.5361 -1.0101 41 1 -0.4649 -3.2531 -1.3970 42 1 0.4890 -1.8898 -2.1924 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000712472357.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:12:07 Heat of formation + Delta-G solvation = 21.273605 kcal Electronic energy + Delta-G solvation = -18901.088236 eV Core-core repulsion = 16267.133814 eV Total energy + Delta-G solvation = -2633.954422 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 249.179 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.33924 -37.13306 -34.84622 -31.96343 -31.65517 -30.97630 -26.19993 -25.29492 -24.45459 -23.08099 -22.25894 -21.25589 -20.11643 -19.23142 -17.53204 -16.54777 -16.01197 -15.14337 -14.55002 -14.25022 -14.12373 -13.64576 -13.62174 -13.21457 -12.91097 -12.67003 -12.49054 -12.13117 -11.72574 -11.52042 -11.38932 -11.04477 -10.87086 -10.73236 -10.70305 -10.50461 -10.40808 -10.02866 -9.96684 -9.65720 -9.56137 -9.35056 -8.45213 -8.33837 -8.18248 -7.52136 -6.20507 -3.89662 3.51111 3.53110 3.71116 4.46146 4.62391 4.68541 4.75120 4.93994 5.07890 5.12985 5.22101 5.28992 5.47635 5.48887 5.52411 5.53810 5.69968 5.74104 5.96749 5.97055 6.00897 6.03869 6.07410 6.17063 6.20024 6.22395 6.25012 6.34269 6.37565 6.40879 6.58192 6.63091 6.67431 6.81394 6.85706 6.92980 7.28676 7.37382 7.95234 8.15656 8.43121 8.57630 9.02575 9.81824 11.19549 Molecular weight = 249.18amu Principal moments of inertia in cm(-1) A = 0.025570 B = 0.005922 C = 0.005166 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1094.771215 B = 4726.883381 C = 5418.662086 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.912 5.912 2 C 0.025 3.975 3 Si 1.065 2.935 4 H -0.285 1.285 5 H -0.291 1.291 6 H -0.289 1.289 7 C -0.546 4.546 8 H 0.051 0.949 9 C 0.026 3.974 10 C 0.106 3.894 11 N -0.645 5.645 12 C 0.066 3.934 13 H 0.044 0.956 14 C -0.130 4.130 15 C -0.090 4.090 16 H 0.091 0.909 17 C -0.108 4.108 18 C -0.118 4.118 19 C -0.114 4.114 20 C -0.098 4.098 21 C -0.107 4.107 22 H 0.069 0.931 23 C -0.202 4.202 24 C -0.181 4.181 25 H 0.272 0.728 26 H 0.067 0.933 27 H -0.005 1.005 28 H 0.334 0.666 29 H 0.075 0.925 30 H 0.071 0.929 31 H 0.055 0.945 32 H 0.061 0.939 33 H 0.057 0.943 34 H 0.062 0.938 35 H 0.060 0.940 36 H 0.058 0.942 37 H 0.057 0.943 38 H 0.060 0.940 39 H 0.079 0.921 40 H 0.061 0.939 41 H 0.063 0.937 42 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.390 -10.356 10.746 15.304 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.179 4.179 3 Si 0.895 3.105 4 H -0.211 1.211 5 H -0.217 1.217 6 H -0.215 1.215 7 C -0.584 4.584 8 H 0.069 0.931 9 C 0.026 3.974 10 C -0.023 4.023 11 N -0.275 5.275 12 C -0.044 4.044 13 H 0.062 0.938 14 C -0.168 4.168 15 C -0.108 4.108 16 H 0.109 0.891 17 C -0.145 4.145 18 C -0.156 4.156 19 C -0.152 4.152 20 C -0.136 4.136 21 C -0.127 4.127 22 H 0.087 0.913 23 C -0.239 4.239 24 C -0.219 4.219 25 H 0.083 0.917 26 H 0.085 0.915 27 H 0.013 0.987 28 H 0.153 0.847 29 H 0.094 0.906 30 H 0.090 0.910 31 H 0.074 0.926 32 H 0.079 0.921 33 H 0.076 0.924 34 H 0.081 0.919 35 H 0.079 0.921 36 H 0.076 0.924 37 H 0.076 0.924 38 H 0.079 0.921 39 H 0.098 0.902 40 H 0.080 0.920 41 H 0.082 0.918 42 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 3.139 -8.055 11.059 14.037 hybrid contribution -0.003 -2.633 -0.541 2.688 sum 3.136 -10.687 10.518 15.319 Atomic orbital electron populations 1.70729 1.06790 1.31239 1.46046 1.25650 0.96540 1.02033 0.93695 0.83597 0.74909 0.75673 0.76366 1.21072 1.21748 1.21531 1.21064 0.94040 0.89342 1.53919 0.93114 1.19185 0.97653 0.95370 0.85232 1.21617 0.92387 0.95574 0.92717 1.60109 1.10858 1.50745 1.05773 1.22840 0.95761 0.94327 0.91501 0.93818 1.23017 0.96075 1.01033 0.96662 1.21663 0.98149 0.96675 0.94331 0.89065 1.21003 0.99421 0.98541 0.95541 1.21471 1.00559 0.95118 0.98416 1.21393 1.00861 0.97227 0.95712 1.20996 1.00152 0.97215 0.95267 1.22189 0.98414 0.94321 0.97734 0.91280 1.22898 0.97871 0.95298 1.07838 1.22753 0.92955 1.02162 1.04021 0.91715 0.91491 0.98713 0.84715 0.90639 0.91039 0.92583 0.92066 0.92445 0.91924 0.92094 0.92370 0.92386 0.92102 0.90231 0.91999 0.91822 0.89804 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -27.23 13.57 55.43 0.75 -26.47 16 2 C 0.03 0.72 5.39 -17.82 -0.10 0.62 16 3 Si 1.07 25.55 29.91 -169.99 -5.08 20.47 16 4 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 5 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 6 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 7 C -0.55 -15.10 8.59 -34.44 -0.30 -15.39 16 8 H 0.05 1.44 7.82 -52.49 -0.41 1.03 16 9 C 0.03 0.65 1.06 -155.66 -0.16 0.48 16 10 C 0.11 2.38 5.39 -3.83 -0.02 2.36 16 11 N -0.64 -12.89 6.23 -105.61 -0.66 -13.54 16 12 C 0.07 1.10 3.63 -66.65 -0.24 0.86 16 13 H 0.04 0.74 7.56 -51.93 -0.39 0.35 16 14 C -0.13 -2.06 7.10 -26.01 -0.18 -2.25 16 15 C -0.09 -1.28 3.70 -91.54 -0.34 -1.62 16 16 H 0.09 1.48 8.14 -51.92 -0.42 1.06 16 17 C -0.11 -1.27 5.60 -27.75 -0.16 -1.43 16 18 C -0.12 -1.23 5.72 -26.89 -0.15 -1.38 16 19 C -0.11 -1.16 5.91 -26.92 -0.16 -1.32 16 20 C -0.10 -1.14 5.42 -27.55 -0.15 -1.29 16 21 C -0.11 -1.48 3.81 -90.94 -0.35 -1.83 16 22 H 0.07 0.97 7.90 -51.93 -0.41 0.56 16 23 C -0.20 -4.40 9.94 -26.69 -0.27 -4.67 16 24 C -0.18 -4.22 8.76 -26.69 -0.23 -4.46 16 25 H 0.27 8.05 6.14 -40.82 -0.25 7.79 16 26 H 0.07 1.68 7.75 -51.93 -0.40 1.28 16 27 H -0.01 -0.11 8.01 -51.93 -0.42 -0.52 16 28 H 0.33 6.46 8.35 -39.29 -0.33 6.13 16 29 H 0.07 1.41 8.14 -51.93 -0.42 0.99 16 30 H 0.07 1.02 6.84 -51.93 -0.35 0.66 16 31 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 32 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 33 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 34 H 0.06 0.68 6.91 -51.93 -0.36 0.32 16 35 H 0.06 0.61 8.12 -51.93 -0.42 0.19 16 36 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 37 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 38 H 0.06 0.72 7.58 -51.93 -0.39 0.32 16 39 H 0.08 1.74 8.14 -51.92 -0.42 1.32 16 40 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 41 H 0.06 1.38 8.14 -51.93 -0.42 0.96 16 42 H 0.08 2.09 8.14 -51.93 -0.42 1.67 16 LS Contribution 323.59 15.07 4.88 4.88 Total: -1.00 -28.78 323.59 -10.51 -39.28 By element: Atomic # 1 Polarization: 14.28 SS G_CDS: -7.59 Total: 6.69 kcal Atomic # 6 Polarization: -28.50 SS G_CDS: -2.81 Total: -31.30 kcal Atomic # 7 Polarization: -40.11 SS G_CDS: 0.09 Total: -40.02 kcal Atomic # 14 Polarization: 25.55 SS G_CDS: -5.08 Total: 20.47 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -28.78 -10.51 -39.28 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000712472357.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.555 kcal (2) G-P(sol) polarization free energy of solvation -28.776 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.779 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.505 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.281 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.274 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds