Wall clock time and date at job start Mon Mar 30 2020 06:12:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31503 * 1 3 3 Si 1.86797 * 120.00170 * 2 1 4 4 H 1.48500 * 109.47149 * 0.02562 * 3 2 1 5 5 H 1.48497 * 109.47424 * 240.00177 * 3 2 1 6 6 H 1.48505 * 109.47421 * 120.00145 * 3 2 1 7 7 C 1.37880 * 120.00373 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00503 * 187.22191 * 7 2 1 9 9 C 1.50703 * 119.99382 * 7.21648 * 7 2 1 10 10 C 1.53000 * 115.55295 * 275.21295 * 9 7 2 11 11 N 1.46896 * 109.46835 * 301.90685 * 10 9 7 12 12 C 1.46907 * 110.99684 * 184.28273 * 11 10 9 13 13 H 1.08997 * 112.88199 * 25.33778 * 12 11 10 14 14 C 1.53894 * 113.65600 * 254.01165 * 12 11 10 15 15 C 1.53485 * 86.50000 * 271.06680 * 14 12 11 16 16 H 1.09007 * 111.88277 * 86.35975 * 15 14 12 17 17 C 1.51409 * 114.48038 * 214.56046 * 15 14 12 18 18 C 1.52585 * 111.53519 * 63.18095 * 17 15 14 19 19 C 1.53112 * 108.83223 * 56.90644 * 18 17 15 20 20 C 1.52524 * 108.92688 * 291.93563 * 19 18 17 21 21 C 1.51866 * 111.46799 * 57.58482 * 20 19 18 22 22 H 1.09003 * 112.16778 * 94.97323 * 21 20 19 23 23 C 1.53002 * 117.49624 * 129.54393 * 9 7 2 24 24 C 1.53005 * 117.49801 * 60.88768 * 9 7 2 25 25 H 0.97000 * 120.00280 * 175.40125 * 1 2 3 26 26 H 1.08995 * 109.47032 * 61.90982 * 10 9 7 27 27 H 1.08994 * 109.47126 * 181.90796 * 10 9 7 28 28 H 1.00895 * 111.00619 * 308.24028 * 11 10 9 29 29 H 1.08999 * 113.70988 * 25.46570 * 14 12 11 30 30 H 1.09002 * 113.70196 * 156.66946 * 14 12 11 31 31 H 1.09004 * 109.06802 * 183.70410 * 17 15 14 32 32 H 1.08994 * 109.07204 * 302.72108 * 17 15 14 33 33 H 1.09005 * 109.57578 * 176.70904 * 18 17 15 34 34 H 1.09003 * 109.58043 * 297.09900 * 18 17 15 35 35 H 1.09001 * 109.56125 * 51.76224 * 19 18 17 36 36 H 1.09001 * 109.56338 * 172.10237 * 19 18 17 37 37 H 1.08996 * 109.09764 * 178.01489 * 20 19 18 38 38 H 1.09000 * 109.09486 * 297.03506 * 20 19 18 39 39 H 1.09010 * 117.50040 * 0.02562 * 23 9 7 40 40 H 1.09005 * 117.49950 * 145.01609 * 23 9 7 41 41 H 1.09000 * 117.49636 * 214.97266 * 24 9 7 42 42 H 1.08998 * 117.49769 * 359.97438 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3150 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 1.2841 2.7464 0.0006 5 1 3.1028 1.6964 -1.2125 6 1 3.1029 1.6964 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0781 -1.1978 0.1170 9 6 1.2599 -2.4939 -0.1651 10 6 0.6761 -3.0871 1.1187 11 7 1.7550 -3.3074 2.0910 12 6 1.2472 -3.9707 3.2995 13 1 0.3471 -4.5569 3.1147 14 6 1.1360 -3.0355 4.5167 15 6 2.5856 -3.4286 4.8326 16 1 3.3016 -2.8002 4.3028 17 6 2.9050 -3.5128 6.3102 18 6 2.0882 -4.6025 6.9986 19 6 2.3539 -5.9371 6.2967 20 6 1.7576 -5.8856 4.8938 21 6 2.3305 -4.7327 4.0883 22 1 3.1712 -5.0424 3.4675 23 6 1.7700 -3.4708 -1.2264 24 6 0.4703 -2.6967 -1.4598 25 1 -0.4850 -0.8373 -0.0674 26 1 -0.0556 -2.3966 1.5380 27 1 0.1914 -4.0368 0.8925 28 1 2.5105 -3.8345 1.6796 29 1 1.0143 -1.9850 4.2526 30 1 0.4177 -3.3726 5.2640 31 1 3.9657 -3.7317 6.4334 32 1 2.6828 -2.5537 6.7779 33 1 2.3845 -4.6748 8.0451 34 1 1.0275 -4.3602 6.9332 35 1 3.4286 -6.1070 6.2304 36 1 1.8891 -6.7453 6.8614 37 1 1.9758 -6.8213 4.3791 38 1 0.6769 -5.7654 4.9699 39 1 2.6445 -3.1735 -1.8053 40 1 1.6895 -4.5361 -1.0101 41 1 -0.4649 -3.2531 -1.3970 42 1 0.4890 -1.8898 -2.1924 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000712472357.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:12:06 Heat of formation + Delta-G solvation = 6.112214 kcal Electronic energy + Delta-G solvation = -18901.745683 eV Core-core repulsion = 16267.133814 eV Total energy + Delta-G solvation = -2634.611869 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 249.179 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.50976 -38.96338 -36.08118 -33.90622 -33.20889 -31.98048 -27.54411 -26.99588 -26.31906 -24.27712 -23.29754 -23.06898 -21.35737 -21.13153 -18.71499 -18.44874 -17.17780 -16.66995 -15.83396 -15.75439 -15.60733 -15.25985 -14.83656 -14.68493 -14.46224 -14.33880 -13.69202 -13.53172 -13.27830 -12.89167 -12.68788 -12.61363 -12.33942 -12.24295 -12.14731 -11.94812 -11.80666 -11.65862 -11.38119 -10.96181 -10.69801 -10.67271 -10.45046 -10.36694 -10.18238 -9.10625 -8.44831 -6.13499 1.54404 1.61978 1.80204 2.62615 3.05090 3.31830 3.38882 3.55633 3.64005 3.91235 3.92997 4.17066 4.20318 4.25110 4.35503 4.44638 4.48305 4.52244 4.54466 4.56455 4.65636 4.73855 4.80563 4.86292 4.90816 4.91794 5.04932 5.07828 5.15550 5.19405 5.26387 5.28411 5.36060 5.42226 5.51055 5.51522 5.65010 5.69130 6.20693 6.32737 6.41962 6.64666 6.82105 7.64052 8.96175 Molecular weight = 249.18amu Principal moments of inertia in cm(-1) A = 0.025570 B = 0.005922 C = 0.005166 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1094.771215 B = 4726.883381 C = 5418.662086 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.939 5.939 2 C -0.023 4.023 3 Si 1.106 2.894 4 H -0.288 1.288 5 H -0.274 1.274 6 H -0.279 1.279 7 C -0.550 4.550 8 H 0.038 0.962 9 C -0.004 4.004 10 C 0.123 3.877 11 N -0.658 5.658 12 C 0.056 3.944 13 H 0.044 0.956 14 C -0.130 4.130 15 C -0.084 4.084 16 H 0.064 0.936 17 C -0.105 4.105 18 C -0.116 4.116 19 C -0.111 4.111 20 C -0.097 4.097 21 C -0.090 4.090 22 H 0.068 0.932 23 C -0.174 4.174 24 C -0.184 4.184 25 H 0.262 0.738 26 H 0.030 0.970 27 H 0.010 0.990 28 H 0.338 0.662 29 H 0.037 0.963 30 H 0.091 0.909 31 H 0.065 0.935 32 H 0.059 0.941 33 H 0.076 0.924 34 H 0.058 0.942 35 H 0.065 0.935 36 H 0.077 0.923 37 H 0.069 0.931 38 H 0.059 0.941 39 H 0.078 0.922 40 H 0.092 0.908 41 H 0.079 0.921 42 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.352 -12.187 11.943 17.610 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.222 4.222 3 Si 0.930 3.070 4 H -0.214 1.214 5 H -0.199 1.199 6 H -0.205 1.205 7 C -0.588 4.588 8 H 0.056 0.944 9 C -0.005 4.005 10 C -0.006 4.006 11 N -0.289 5.289 12 C -0.054 4.054 13 H 0.062 0.938 14 C -0.168 4.168 15 C -0.103 4.103 16 H 0.083 0.917 17 C -0.143 4.143 18 C -0.154 4.154 19 C -0.148 4.148 20 C -0.135 4.135 21 C -0.109 4.109 22 H 0.087 0.913 23 C -0.211 4.211 24 C -0.222 4.222 25 H 0.072 0.928 26 H 0.049 0.951 27 H 0.028 0.972 28 H 0.157 0.843 29 H 0.056 0.944 30 H 0.109 0.891 31 H 0.084 0.916 32 H 0.077 0.923 33 H 0.094 0.906 34 H 0.076 0.924 35 H 0.084 0.916 36 H 0.096 0.904 37 H 0.088 0.912 38 H 0.077 0.923 39 H 0.097 0.903 40 H 0.110 0.890 41 H 0.098 0.902 42 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 4.116 -9.908 12.256 16.289 hybrid contribution -0.294 -2.083 -0.924 2.297 sum 3.822 -11.991 11.332 16.935 Atomic orbital electron populations 1.70831 1.07620 1.30723 1.48467 1.26853 0.96658 1.05352 0.93300 0.83060 0.74186 0.72382 0.77357 1.21382 1.19932 1.20497 1.21300 0.93608 0.91042 1.52826 0.94411 1.19267 0.99066 0.95540 0.86619 1.21253 0.92211 0.95100 0.92050 1.59993 1.10509 1.52117 1.06246 1.22967 0.96967 0.95048 0.90441 0.93816 1.23029 0.98075 0.98621 0.97097 1.21565 0.96102 0.96490 0.96143 0.91719 1.20985 1.00396 0.99346 0.93532 1.21477 0.99938 0.94606 0.99346 1.21392 1.01234 0.97552 0.94636 1.21014 0.99989 0.96381 0.96089 1.22121 0.97101 0.94622 0.97025 0.91311 1.22895 0.96700 0.96328 1.05178 1.22675 0.94572 1.02196 1.02746 0.92756 0.95123 0.97159 0.84280 0.94409 0.89083 0.91608 0.92269 0.90561 0.92361 0.91621 0.90447 0.91182 0.92255 0.90344 0.88981 0.90220 0.92124 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.54 13.57 21.45 0.29 -57.25 16 2 C -0.02 -1.33 5.39 84.66 0.46 -0.87 16 3 Si 1.11 52.12 29.91 68.60 2.05 54.17 16 4 H -0.29 -13.63 7.11 99.48 0.71 -12.92 16 5 H -0.27 -12.04 7.11 99.48 0.71 -11.33 16 6 H -0.28 -12.59 7.11 99.48 0.71 -11.89 16 7 C -0.55 -30.90 8.59 25.60 0.22 -30.68 16 8 H 0.04 2.17 7.82 -2.91 -0.02 2.14 16 9 C 0.00 -0.21 1.06 -52.92 -0.06 -0.26 16 10 C 0.12 5.60 5.39 86.30 0.46 6.06 16 11 N -0.66 -26.51 6.23 -488.04 -3.04 -29.55 16 12 C 0.06 1.85 3.63 45.60 0.17 2.01 16 13 H 0.04 1.45 7.56 -2.39 -0.02 1.43 16 14 C -0.13 -4.18 7.10 31.06 0.22 -3.95 16 15 C -0.08 -2.37 3.70 -11.39 -0.04 -2.41 16 16 H 0.06 2.14 8.14 -2.38 -0.02 2.12 16 17 C -0.11 -2.30 5.60 29.94 0.17 -2.13 16 18 C -0.12 -2.07 5.72 30.49 0.17 -1.89 16 19 C -0.11 -1.84 5.91 30.47 0.18 -1.66 16 20 C -0.10 -1.96 5.42 30.06 0.16 -1.79 16 21 C -0.09 -2.33 3.81 -11.00 -0.04 -2.37 16 22 H 0.07 1.81 7.90 -2.39 -0.02 1.79 16 23 C -0.17 -7.33 9.94 30.62 0.30 -7.02 16 24 C -0.18 -8.56 8.76 30.62 0.27 -8.29 16 25 H 0.26 16.07 6.14 -92.71 -0.57 15.50 16 26 H 0.03 1.59 7.75 -2.39 -0.02 1.57 16 27 H 0.01 0.44 8.01 -2.39 -0.02 0.42 16 28 H 0.34 12.93 8.35 -89.70 -0.75 12.18 16 29 H 0.04 1.48 8.14 -2.39 -0.02 1.46 16 30 H 0.09 2.53 6.84 -2.39 -0.02 2.51 16 31 H 0.07 1.32 8.14 -2.39 -0.02 1.30 16 32 H 0.06 1.31 8.14 -2.39 -0.02 1.29 16 33 H 0.08 1.11 8.14 -2.38 -0.02 1.09 16 34 H 0.06 1.10 6.91 -2.39 -0.02 1.08 16 35 H 0.07 1.06 8.12 -2.39 -0.02 1.04 16 36 H 0.08 1.04 8.14 -2.39 -0.02 1.02 16 37 H 0.07 1.27 8.14 -2.39 -0.02 1.26 16 38 H 0.06 1.24 7.58 -2.39 -0.02 1.22 16 39 H 0.08 3.32 8.14 -2.38 -0.02 3.30 16 40 H 0.09 3.33 8.14 -2.38 -0.02 3.31 16 41 H 0.08 3.41 8.14 -2.39 -0.02 3.39 16 42 H 0.06 3.08 8.14 -2.39 -0.02 3.06 16 Total: -1.00 -62.91 323.59 2.37 -60.54 By element: Atomic # 1 Polarization: 26.93 SS G_CDS: 0.42 Total: 27.36 kcal Atomic # 6 Polarization: -57.90 SS G_CDS: 2.64 Total: -55.26 kcal Atomic # 7 Polarization: -84.06 SS G_CDS: -2.75 Total: -86.80 kcal Atomic # 14 Polarization: 52.12 SS G_CDS: 2.05 Total: 54.17 kcal Total: -62.91 2.37 -60.54 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000712472357.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.650 kcal (2) G-P(sol) polarization free energy of solvation -62.909 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.742 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.370 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.538 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.112 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds