Wall clock time and date at job start Mon Mar 30 2020 06:12:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86799 * 119.99841 * 2 1 4 4 H 1.48499 * 109.47487 * 240.00358 * 3 2 1 5 5 H 1.48496 * 109.47350 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.46892 * 120.00459 * 3 2 1 7 7 C 1.37874 * 119.99986 * 180.02562 * 2 1 3 8 8 H 1.08007 * 120.00033 * 163.06447 * 7 2 1 9 9 C 1.50696 * 120.00090 * 343.05412 * 7 2 1 10 10 C 1.52996 * 115.55230 * 322.39194 * 9 7 2 11 11 N 1.46897 * 109.47376 * 268.78591 * 10 9 7 12 12 C 1.46895 * 111.00353 * 185.14928 * 11 10 9 13 13 H 1.08998 * 112.88885 * 22.39152 * 12 11 10 14 14 C 1.53959 * 113.66485 * 250.91668 * 12 11 10 15 15 C 1.53230 * 86.25351 * 218.96409 * 14 12 11 16 16 H 1.09004 * 111.34253 * 274.74642 * 15 14 12 17 17 C 1.50508 * 115.71978 * 147.24401 * 15 14 12 18 18 C 1.51635 * 114.39217 * 290.08664 * 17 15 14 19 19 C 1.52600 * 111.07625 * 313.09398 * 18 17 15 20 20 C 1.52983 * 108.83713 * 63.69578 * 19 18 17 21 21 C 1.52541 * 87.67666 * 26.88682 * 15 14 12 22 22 H 1.08992 * 113.95821 * 218.48642 * 21 15 14 23 23 C 1.53003 * 117.50175 * 176.71636 * 9 7 2 24 24 C 1.52994 * 60.03433 * 252.47988 * 23 9 7 25 25 H 0.96998 * 120.00809 * 5.01404 * 1 2 3 26 26 H 1.08995 * 109.47348 * 28.78898 * 10 9 7 27 27 H 1.09001 * 109.47277 * 148.78772 * 10 9 7 28 28 H 1.00904 * 110.99785 * 61.19743 * 11 10 9 29 29 H 1.09003 * 113.75001 * 333.29444 * 14 12 11 30 30 H 1.09001 * 113.74990 * 104.63074 * 14 12 11 31 31 H 1.08996 * 108.49667 * 51.35587 * 17 15 14 32 32 H 1.08996 * 108.49904 * 168.81391 * 17 15 14 33 33 H 1.08993 * 109.15694 * 73.50797 * 18 17 15 34 34 H 1.09005 * 109.15306 * 192.68352 * 18 17 15 35 35 H 1.08998 * 109.57903 * 183.50591 * 19 18 17 36 36 H 1.09002 * 109.57393 * 303.75743 * 19 18 17 37 37 H 1.08993 * 109.51929 * 176.41881 * 20 19 18 38 38 H 1.09003 * 109.51248 * 56.25271 * 20 19 18 39 39 H 1.09001 * 117.49716 * 359.97438 * 23 9 7 40 40 H 1.09003 * 117.50199 * 144.97205 * 23 9 7 41 41 H 1.08996 * 117.49974 * 107.50113 * 24 23 9 42 42 H 1.09003 * 117.49770 * 252.52027 * 24 23 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6966 -1.2125 5 1 1.2841 2.7465 0.0006 6 1 3.1029 1.6963 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0494 -1.2142 -0.2730 9 6 1.3001 -2.4709 0.3793 10 6 0.2778 -2.3492 1.5110 11 7 0.9375 -2.6111 2.7971 12 6 -0.0372 -2.6233 3.8960 13 1 -1.0534 -2.8282 3.5591 14 6 0.0720 -1.4062 4.8325 15 6 -0.2072 -2.3874 5.9758 16 1 -1.2775 -2.5385 6.1165 17 6 0.4613 -2.0705 7.2865 18 6 1.9659 -2.2589 7.2838 19 6 2.3506 -3.5943 6.6534 20 6 1.9243 -3.5879 5.1841 21 6 0.4002 -3.4809 5.1027 22 1 -0.1124 -4.4402 5.1743 23 6 2.0981 -3.7730 0.2852 24 6 1.0011 -3.4734 -0.7382 25 1 -0.4851 0.8367 -0.0734 26 1 -0.1409 -1.3429 1.5158 27 1 -0.5214 -3.0745 1.3584 28 1 1.6701 -1.9394 2.9711 29 1 1.0685 -0.9658 4.8657 30 1 -0.7160 -0.6674 4.6859 31 1 0.2430 -1.0342 7.5443 32 1 0.0338 -2.7122 8.0568 33 1 2.4266 -1.4498 6.7171 34 1 2.3319 -2.2291 8.3101 35 1 3.4297 -3.7323 6.7200 36 1 1.8457 -4.4050 7.1787 37 1 2.2505 -4.5117 4.7063 38 1 2.3768 -2.7354 4.6774 39 1 3.1326 -3.7060 -0.0518 40 1 1.8952 -4.5426 1.0300 41 1 1.3137 -3.2094 -1.7485 42 1 0.0762 -4.0458 -0.6667 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000712472358.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:12:09 Heat of formation + Delta-G solvation = 17.278897 kcal Electronic energy + Delta-G solvation = -19128.180547 eV Core-core repulsion = 16494.052901 eV Total energy + Delta-G solvation = -2634.127645 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 249.179 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.46152 -38.58836 -35.81940 -34.21184 -33.37229 -31.69135 -27.80429 -27.09472 -25.97997 -24.56670 -22.93922 -22.72697 -21.30209 -20.80731 -18.57893 -18.07673 -17.05113 -16.72985 -16.26955 -15.74907 -15.44252 -15.27351 -14.89222 -14.47466 -14.20629 -13.65028 -13.49220 -13.31463 -13.20856 -12.92086 -12.83467 -12.50085 -12.42385 -12.27960 -12.16544 -11.98907 -11.78364 -11.64390 -11.21391 -10.94392 -10.87295 -10.66380 -10.58089 -10.46585 -9.99794 -8.89674 -8.07099 -6.15357 1.39570 1.42592 1.49480 2.40376 2.98350 3.40470 3.66802 3.70351 3.81760 3.86754 4.11791 4.26603 4.30095 4.36379 4.40210 4.55451 4.66836 4.69009 4.76372 4.83213 4.86194 4.89895 4.96723 5.03980 5.05420 5.15094 5.18010 5.20207 5.27574 5.30239 5.34046 5.37518 5.43875 5.56284 5.60834 5.64552 5.70462 5.75532 6.03787 6.45886 6.55611 6.67955 6.90931 7.42815 8.90074 Molecular weight = 249.18amu Principal moments of inertia in cm(-1) A = 0.021919 B = 0.006735 C = 0.005967 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1277.136775 B = 4156.634978 C = 4691.233646 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.031 3.969 3 Si 0.944 3.056 4 H -0.275 1.275 5 H -0.285 1.285 6 H -0.269 1.269 7 C -0.510 4.510 8 H 0.049 0.951 9 C 0.030 3.970 10 C 0.102 3.898 11 N -0.665 5.665 12 C 0.058 3.942 13 H 0.075 0.925 14 C -0.161 4.161 15 C -0.090 4.090 16 H 0.084 0.916 17 C -0.100 4.100 18 C -0.115 4.115 19 C -0.114 4.114 20 C -0.086 4.086 21 C -0.082 4.082 22 H 0.075 0.925 23 C -0.168 4.168 24 C -0.210 4.210 25 H 0.261 0.739 26 H 0.055 0.945 27 H 0.026 0.974 28 H 0.335 0.665 29 H 0.074 0.926 30 H 0.051 0.949 31 H 0.061 0.939 32 H 0.069 0.931 33 H 0.046 0.954 34 H 0.074 0.926 35 H 0.065 0.935 36 H 0.067 0.933 37 H 0.056 0.944 38 H 0.051 0.949 39 H 0.069 0.931 40 H 0.086 0.914 41 H 0.063 0.937 42 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.752 -4.378 14.710 15.366 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.169 4.169 3 Si 0.770 3.230 4 H -0.200 1.200 5 H -0.211 1.211 6 H -0.194 1.194 7 C -0.547 4.547 8 H 0.067 0.933 9 C 0.029 3.971 10 C -0.027 4.027 11 N -0.293 5.293 12 C -0.053 4.053 13 H 0.093 0.907 14 C -0.200 4.200 15 C -0.109 4.109 16 H 0.102 0.898 17 C -0.138 4.138 18 C -0.153 4.153 19 C -0.151 4.151 20 C -0.124 4.124 21 C -0.101 4.101 22 H 0.093 0.907 23 C -0.206 4.206 24 C -0.249 4.249 25 H 0.071 0.929 26 H 0.073 0.927 27 H 0.045 0.955 28 H 0.153 0.847 29 H 0.093 0.907 30 H 0.070 0.930 31 H 0.079 0.921 32 H 0.088 0.912 33 H 0.065 0.935 34 H 0.092 0.908 35 H 0.084 0.916 36 H 0.086 0.914 37 H 0.075 0.925 38 H 0.070 0.930 39 H 0.088 0.912 40 H 0.105 0.895 41 H 0.082 0.918 42 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 0.569 -4.918 14.666 15.479 hybrid contribution -0.072 1.871 -0.704 2.001 sum 0.498 -3.046 13.962 14.299 Atomic orbital electron populations 1.70021 1.07123 1.27377 1.48949 1.25577 0.95355 1.01699 0.94310 0.85828 0.78715 0.79516 0.78930 1.20015 1.21057 1.19432 1.20796 0.95944 0.91614 1.46363 0.93256 1.19045 0.96410 0.88198 0.93439 1.21374 0.94000 0.99536 0.87759 1.60443 1.12567 1.55210 1.01118 1.23288 0.95192 0.96543 0.90256 0.90701 1.23590 1.01109 0.97101 0.98236 1.21450 1.00096 0.95797 0.93512 0.89773 1.20514 0.95553 1.01632 0.96100 1.21144 0.95745 0.97407 1.00985 1.21406 1.00777 0.97724 0.95219 1.21095 0.93476 1.01523 0.96293 1.22382 0.96672 0.97176 0.93891 0.90702 1.22620 0.94790 1.01604 1.01564 1.22968 0.98915 1.07667 0.95317 0.92907 0.92736 0.95535 0.84717 0.90727 0.93044 0.92054 0.91202 0.93478 0.90755 0.91625 0.91394 0.92524 0.93013 0.91218 0.89517 0.91827 0.91246 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -50.13 11.06 21.45 0.24 -49.89 16 2 C 0.03 1.68 5.05 84.65 0.43 2.11 16 3 Si 0.94 42.63 29.57 68.60 2.03 44.66 16 4 H -0.27 -12.25 7.11 99.48 0.71 -11.54 16 5 H -0.29 -12.66 7.11 99.48 0.71 -11.95 16 6 H -0.27 -11.81 7.11 99.48 0.71 -11.11 16 7 C -0.51 -27.87 9.00 25.60 0.23 -27.64 16 8 H 0.05 2.72 7.87 -2.91 -0.02 2.69 16 9 C 0.03 1.50 1.98 -52.90 -0.10 1.39 16 10 C 0.10 4.83 5.31 86.30 0.46 5.29 16 11 N -0.66 -26.36 5.38 -487.73 -2.62 -28.98 16 12 C 0.06 1.94 4.04 45.67 0.18 2.12 16 13 H 0.07 2.63 7.79 -2.39 -0.02 2.61 16 14 C -0.16 -4.86 6.88 31.00 0.21 -4.65 16 15 C -0.09 -2.16 3.63 -11.71 -0.04 -2.20 16 16 H 0.08 1.90 8.14 -2.39 -0.02 1.88 16 17 C -0.10 -2.01 5.51 29.34 0.16 -1.85 16 18 C -0.12 -2.29 5.75 30.01 0.17 -2.12 16 19 C -0.11 -2.36 5.90 30.46 0.18 -2.18 16 20 C -0.09 -2.28 4.91 30.59 0.15 -2.13 16 21 C -0.08 -2.20 4.28 -10.48 -0.04 -2.25 16 22 H 0.07 1.93 8.14 -2.39 -0.02 1.91 16 23 C -0.17 -7.49 9.71 30.59 0.30 -7.20 16 24 C -0.21 -9.98 9.89 30.62 0.30 -9.68 16 25 H 0.26 14.00 8.32 -92.71 -0.77 13.23 16 26 H 0.05 2.91 5.33 -2.39 -0.01 2.90 16 27 H 0.03 1.25 7.76 -2.39 -0.02 1.23 16 28 H 0.33 13.95 7.28 -89.69 -0.65 13.29 16 29 H 0.07 2.35 7.12 -2.39 -0.02 2.33 16 30 H 0.05 1.60 8.14 -2.39 -0.02 1.59 16 31 H 0.06 1.20 8.14 -2.39 -0.02 1.18 16 32 H 0.07 1.20 8.14 -2.39 -0.02 1.18 16 33 H 0.05 1.05 7.94 -2.39 -0.02 1.03 16 34 H 0.07 1.21 8.14 -2.38 -0.02 1.19 16 35 H 0.07 1.27 8.14 -2.39 -0.02 1.25 16 36 H 0.07 1.28 8.14 -2.39 -0.02 1.26 16 37 H 0.06 1.56 8.14 -2.39 -0.02 1.54 16 38 H 0.05 1.56 5.91 -2.39 -0.01 1.55 16 39 H 0.07 3.04 8.14 -2.39 -0.02 3.02 16 40 H 0.09 3.62 8.14 -2.39 -0.02 3.60 16 41 H 0.06 3.08 8.14 -2.39 -0.02 3.07 16 42 H 0.07 3.12 8.03 -2.39 -0.02 3.10 16 Total: -1.00 -55.71 320.20 2.55 -53.16 By element: Atomic # 1 Polarization: 31.70 SS G_CDS: 0.32 Total: 32.03 kcal Atomic # 6 Polarization: -53.56 SS G_CDS: 2.59 Total: -50.97 kcal Atomic # 7 Polarization: -76.49 SS G_CDS: -2.38 Total: -78.87 kcal Atomic # 14 Polarization: 42.63 SS G_CDS: 2.03 Total: 44.66 kcal Total: -55.71 2.55 -53.16 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000712472358.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.434 kcal (2) G-P(sol) polarization free energy of solvation -55.707 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.727 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.551 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.155 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.279 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds