Wall clock time and date at job start Mon Mar 30 2020 06:12:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86801 * 119.99551 * 2 1 4 4 H 1.48503 * 109.46959 * 239.99997 * 3 2 1 5 5 H 1.48499 * 109.47420 * 359.97438 * 3 2 1 6 6 H 1.48502 * 109.47198 * 120.00114 * 3 2 1 7 7 C 1.37877 * 120.00324 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99963 * 171.39871 * 7 2 1 9 9 C 1.50700 * 119.99908 * 351.39956 * 7 2 1 10 10 C 1.52994 * 115.56034 * 80.34626 * 9 7 2 11 11 N 1.46895 * 109.47626 * 38.73555 * 10 9 7 12 12 C 1.46897 * 111.00432 * 184.58547 * 11 10 9 13 13 H 1.08994 * 112.88756 * 336.35102 * 12 11 10 14 14 C 1.53965 * 113.66529 * 107.82874 * 12 11 10 15 15 C 1.53233 * 86.25558 * 87.91093 * 14 12 11 16 16 H 1.08994 * 110.60464 * 274.81206 * 15 14 12 17 17 C 1.51778 * 114.73266 * 146.12503 * 15 14 12 18 18 C 1.51637 * 115.00697 * 289.67127 * 17 15 14 19 19 C 1.52596 * 111.07062 * 313.66282 * 18 17 15 20 20 C 1.52987 * 108.83085 * 63.70640 * 19 18 17 21 21 C 1.52540 * 87.67819 * 26.88006 * 15 14 12 22 22 H 1.08997 * 113.95283 * 218.49688 * 21 15 14 23 23 C 1.52995 * 117.49782 * 294.65604 * 9 7 2 24 24 C 1.53008 * 60.03313 * 252.49964 * 23 9 7 25 25 H 0.96998 * 120.00289 * 359.97438 * 1 2 3 26 26 H 1.09007 * 109.47070 * 158.73511 * 10 9 7 27 27 H 1.09005 * 109.47164 * 278.73413 * 10 9 7 28 28 H 1.00901 * 111.00054 * 60.62892 * 11 10 9 29 29 H 1.09007 * 113.74172 * 202.24681 * 14 12 11 30 30 H 1.09001 * 113.74804 * 333.57576 * 14 12 11 31 31 H 1.09002 * 107.74093 * 168.55114 * 17 15 14 32 32 H 1.08995 * 108.49606 * 51.35129 * 17 15 14 33 33 H 1.08997 * 109.15582 * 193.25315 * 18 17 15 34 34 H 1.08999 * 109.11124 * 74.04334 * 18 17 15 35 35 H 1.09000 * 109.58197 * 303.89899 * 19 18 17 36 36 H 1.09003 * 109.68624 * 183.57430 * 19 18 17 37 37 H 1.08999 * 109.51186 * 176.40713 * 20 19 18 38 38 H 1.08997 * 109.55974 * 56.27539 * 20 19 18 39 39 H 1.09003 * 117.50180 * 0.02562 * 23 9 7 40 40 H 1.08998 * 117.50176 * 145.00036 * 23 9 7 41 41 H 1.08997 * 117.49447 * 107.50201 * 24 23 9 42 42 H 1.08999 * 117.49818 * 252.52277 * 24 23 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.1028 1.6965 -1.2125 5 1 1.2840 2.7465 -0.0006 6 1 3.1028 1.6966 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0755 -1.1993 -0.1393 9 6 1.2639 -2.4917 0.1963 10 6 0.5639 -3.0461 -1.0460 11 7 1.4089 -2.8201 -2.2262 12 6 0.7219 -3.2419 -3.4542 13 1 -0.0533 -3.9861 -3.2721 14 6 0.2598 -2.0687 -4.3378 15 6 1.6486 -2.1381 -4.9818 16 1 2.3696 -1.5622 -4.4017 17 6 1.6812 -1.7940 -6.4597 18 6 1.0394 -2.8216 -7.3715 19 6 1.4948 -4.2333 -7.0133 20 6 1.0117 -4.5644 -5.6000 21 6 1.6817 -3.6156 -4.6040 22 1 2.6587 -3.9653 -4.2703 23 6 0.5888 -2.7226 1.5497 24 6 1.8544 -3.5009 1.1842 25 1 -0.4850 0.8400 0.0004 26 1 0.3937 -4.1155 -0.9204 27 1 -0.3918 -2.5395 -1.1811 28 1 2.2974 -3.2886 -2.1298 29 1 -0.5526 -2.3250 -5.0179 30 1 0.0782 -1.1474 -3.7845 31 1 2.7252 -1.6775 -6.7506 32 1 1.1747 -0.8396 -6.6037 33 1 1.3170 -2.6071 -8.4034 34 1 -0.0443 -2.7594 -7.2723 35 1 2.5829 -4.2862 -7.0492 36 1 1.0710 -4.9464 -7.7206 37 1 1.2759 -5.5936 -5.3567 38 1 -0.0702 -4.4438 -5.5466 39 1 0.6801 -1.9357 2.2985 40 1 -0.3542 -3.2691 1.5551 41 1 2.7786 -3.2262 1.6927 42 1 1.7439 -4.5594 0.9487 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000712510629.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:12:15 Heat of formation + Delta-G solvation = 29.477893 kcal Electronic energy + Delta-G solvation = -18983.126726 eV Core-core repulsion = 16349.528068 eV Total energy + Delta-G solvation = -2633.598657 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 249.179 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.14746 -36.76766 -34.74453 -31.82502 -31.68438 -30.83074 -26.02111 -25.41505 -24.55443 -22.93265 -22.24177 -21.06812 -19.85685 -18.90990 -17.43159 -16.01917 -15.78904 -14.99174 -14.42416 -14.37693 -14.16757 -13.88272 -13.43914 -13.10764 -12.75736 -12.48394 -12.30271 -11.74288 -11.67008 -11.37593 -11.18474 -10.89499 -10.85718 -10.80769 -10.62167 -10.44432 -10.37076 -10.07730 -9.88139 -9.58436 -9.46281 -9.19274 -8.72279 -8.24714 -7.96051 -7.26840 -5.84814 -3.84008 3.42026 3.45831 3.49035 4.55814 4.64596 4.79396 4.87264 5.08191 5.20687 5.23142 5.38762 5.41240 5.47315 5.58950 5.63490 5.68124 5.78075 5.84186 6.03749 6.07303 6.14562 6.19335 6.24576 6.28485 6.31314 6.34723 6.37712 6.45849 6.58385 6.68283 6.77743 6.81382 6.88324 6.97022 7.08667 7.16321 7.49988 7.56769 8.06601 8.19426 8.39273 8.65052 9.10550 9.77726 11.26079 Molecular weight = 249.18amu Principal moments of inertia in cm(-1) A = 0.023316 B = 0.006566 C = 0.005535 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1200.608276 B = 4263.522078 C = 5057.272296 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.881 5.881 2 C 0.076 3.924 3 Si 0.884 3.116 4 H -0.278 1.278 5 H -0.291 1.291 6 H -0.281 1.281 7 C -0.464 4.464 8 H 0.055 0.945 9 C 0.052 3.948 10 C 0.113 3.887 11 N -0.637 5.637 12 C 0.069 3.931 13 H 0.042 0.958 14 C -0.130 4.130 15 C -0.090 4.090 16 H 0.094 0.906 17 C -0.107 4.107 18 C -0.113 4.113 19 C -0.115 4.115 20 C -0.099 4.099 21 C -0.111 4.111 22 H 0.071 0.929 23 C -0.165 4.165 24 C -0.218 4.218 25 H 0.255 0.745 26 H -0.010 1.010 27 H 0.072 0.928 28 H 0.331 0.669 29 H 0.067 0.933 30 H 0.077 0.923 31 H 0.050 0.950 32 H 0.058 0.942 33 H 0.055 0.945 34 H 0.057 0.943 35 H 0.060 0.940 36 H 0.056 0.944 37 H 0.058 0.942 38 H 0.063 0.937 39 H 0.079 0.921 40 H 0.060 0.940 41 H 0.075 0.925 42 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.148 -7.252 -11.627 13.752 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.519 5.519 2 C -0.126 4.126 3 Si 0.712 3.288 4 H -0.203 1.203 5 H -0.217 1.217 6 H -0.207 1.207 7 C -0.502 4.502 8 H 0.073 0.927 9 C 0.051 3.949 10 C -0.016 4.016 11 N -0.267 5.267 12 C -0.042 4.042 13 H 0.060 0.940 14 C -0.168 4.168 15 C -0.108 4.108 16 H 0.113 0.887 17 C -0.144 4.144 18 C -0.150 4.150 19 C -0.152 4.152 20 C -0.137 4.137 21 C -0.130 4.130 22 H 0.090 0.910 23 C -0.204 4.204 24 C -0.255 4.255 25 H 0.065 0.935 26 H 0.008 0.992 27 H 0.090 0.910 28 H 0.149 0.851 29 H 0.085 0.915 30 H 0.096 0.904 31 H 0.069 0.931 32 H 0.077 0.923 33 H 0.074 0.926 34 H 0.076 0.924 35 H 0.079 0.921 36 H 0.075 0.925 37 H 0.077 0.923 38 H 0.081 0.919 39 H 0.097 0.903 40 H 0.078 0.922 41 H 0.094 0.906 42 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 0.796 -6.448 -11.678 13.364 hybrid contribution 0.394 0.012 0.216 0.450 sum 1.191 -6.435 -11.463 13.199 Atomic orbital electron populations 1.69993 1.05791 1.25960 1.50115 1.24810 0.94577 0.98330 0.94855 0.86813 0.79709 0.83886 0.78380 1.20334 1.21671 1.20694 1.20069 0.92702 0.88439 1.48997 0.92720 1.18919 0.96435 0.93620 0.85943 1.21473 0.96799 0.93325 0.89983 1.60067 1.05204 1.61428 0.99960 1.22834 0.95683 0.95466 0.90184 0.94020 1.22980 0.95744 1.00382 0.97718 1.21762 0.99253 0.95711 0.94100 0.88744 1.20802 1.00271 0.98467 0.94881 1.21107 1.00513 0.94964 0.98460 1.21361 1.00884 0.96535 0.96449 1.21338 1.00124 0.98087 0.94161 1.22576 0.98677 0.95340 0.96377 0.91034 1.22546 0.93186 1.01490 1.03136 1.23066 0.97549 0.95438 1.09488 0.93499 0.99249 0.91013 0.85077 0.91489 0.90438 0.93081 0.92296 0.92587 0.92416 0.92115 0.92487 0.92321 0.91860 0.90282 0.92164 0.90620 0.92115 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.22 13.20 55.43 0.73 -24.49 16 2 C 0.08 2.11 5.41 -17.82 -0.10 2.02 16 3 Si 0.88 21.64 29.55 -169.99 -5.02 16.62 16 4 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 5 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 6 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 7 C -0.46 -12.56 8.11 -34.44 -0.28 -12.84 16 8 H 0.05 1.50 7.83 -52.49 -0.41 1.09 16 9 C 0.05 1.26 1.65 -155.63 -0.26 1.01 16 10 C 0.11 2.56 5.61 -3.83 -0.02 2.54 16 11 N -0.64 -13.03 5.66 -105.50 -0.60 -13.63 16 12 C 0.07 1.19 3.65 -66.55 -0.24 0.95 16 13 H 0.04 0.73 7.73 -51.93 -0.40 0.33 16 14 C -0.13 -2.19 7.07 -26.11 -0.18 -2.38 16 15 C -0.09 -1.37 3.67 -91.41 -0.34 -1.70 16 16 H 0.09 1.65 8.11 -51.93 -0.42 1.23 16 17 C -0.11 -1.36 5.48 -28.04 -0.15 -1.51 16 18 C -0.11 -1.24 5.76 -27.63 -0.16 -1.40 16 19 C -0.11 -1.22 5.90 -26.94 -0.16 -1.38 16 20 C -0.10 -1.19 5.40 -26.74 -0.14 -1.34 16 21 C -0.11 -1.58 3.90 -90.13 -0.35 -1.93 16 22 H 0.07 1.03 7.95 -51.93 -0.41 0.62 16 23 C -0.17 -3.92 9.79 -26.73 -0.26 -4.18 16 24 C -0.22 -4.78 9.89 -26.69 -0.26 -5.04 16 25 H 0.26 7.11 8.31 -40.82 -0.34 6.77 16 26 H -0.01 -0.22 7.94 -51.93 -0.41 -0.63 16 27 H 0.07 1.81 8.13 -51.93 -0.42 1.39 16 28 H 0.33 6.48 8.47 -39.29 -0.33 6.15 16 29 H 0.07 1.02 7.48 -51.93 -0.39 0.63 16 30 H 0.08 1.57 8.14 -51.93 -0.42 1.14 16 31 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 32 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 33 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 34 H 0.06 0.64 7.96 -51.93 -0.41 0.23 16 35 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 36 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 37 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 38 H 0.06 0.78 7.25 -51.93 -0.38 0.40 16 39 H 0.08 1.98 8.14 -51.93 -0.42 1.56 16 40 H 0.06 1.35 8.14 -51.93 -0.42 0.92 16 41 H 0.08 1.64 8.14 -51.93 -0.42 1.22 16 42 H 0.06 1.21 8.08 -51.93 -0.42 0.79 16 LS Contribution 327.68 15.07 4.94 4.94 Total: -1.00 -27.63 327.68 -10.64 -38.26 By element: Atomic # 1 Polarization: 13.26 SS G_CDS: -7.77 Total: 5.49 kcal Atomic # 6 Polarization: -24.28 SS G_CDS: -2.91 Total: -27.19 kcal Atomic # 7 Polarization: -38.25 SS G_CDS: 0.13 Total: -38.12 kcal Atomic # 14 Polarization: 21.64 SS G_CDS: -5.02 Total: 16.62 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -27.63 -10.64 -38.26 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000712510629.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.741 kcal (2) G-P(sol) polarization free energy of solvation -27.628 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.113 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.635 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.263 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.478 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds