Wall clock time and date at job start Mon Mar 30 2020 06:12:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86801 * 119.99551 * 2 1 4 4 H 1.48503 * 109.46959 * 239.99997 * 3 2 1 5 5 H 1.48499 * 109.47420 * 359.97438 * 3 2 1 6 6 H 1.48502 * 109.47198 * 120.00114 * 3 2 1 7 7 C 1.37877 * 120.00324 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99963 * 171.39871 * 7 2 1 9 9 C 1.50700 * 119.99908 * 351.39956 * 7 2 1 10 10 C 1.52994 * 115.56034 * 80.34626 * 9 7 2 11 11 N 1.46895 * 109.47626 * 38.73555 * 10 9 7 12 12 C 1.46897 * 111.00432 * 184.58547 * 11 10 9 13 13 H 1.08994 * 112.88756 * 336.35102 * 12 11 10 14 14 C 1.53965 * 113.66529 * 107.82874 * 12 11 10 15 15 C 1.53233 * 86.25558 * 87.91093 * 14 12 11 16 16 H 1.08994 * 110.60464 * 274.81206 * 15 14 12 17 17 C 1.51778 * 114.73266 * 146.12503 * 15 14 12 18 18 C 1.51637 * 115.00697 * 289.67127 * 17 15 14 19 19 C 1.52596 * 111.07062 * 313.66282 * 18 17 15 20 20 C 1.52987 * 108.83085 * 63.70640 * 19 18 17 21 21 C 1.52540 * 87.67819 * 26.88006 * 15 14 12 22 22 H 1.08997 * 113.95283 * 218.49688 * 21 15 14 23 23 C 1.52995 * 117.49782 * 294.65604 * 9 7 2 24 24 C 1.53008 * 60.03313 * 252.49964 * 23 9 7 25 25 H 0.96998 * 120.00289 * 359.97438 * 1 2 3 26 26 H 1.09007 * 109.47070 * 158.73511 * 10 9 7 27 27 H 1.09005 * 109.47164 * 278.73413 * 10 9 7 28 28 H 1.00901 * 111.00054 * 60.62892 * 11 10 9 29 29 H 1.09007 * 113.74172 * 202.24681 * 14 12 11 30 30 H 1.09001 * 113.74804 * 333.57576 * 14 12 11 31 31 H 1.09002 * 107.74093 * 168.55114 * 17 15 14 32 32 H 1.08995 * 108.49606 * 51.35129 * 17 15 14 33 33 H 1.08997 * 109.15582 * 193.25315 * 18 17 15 34 34 H 1.08999 * 109.11124 * 74.04334 * 18 17 15 35 35 H 1.09000 * 109.58197 * 303.89899 * 19 18 17 36 36 H 1.09003 * 109.68624 * 183.57430 * 19 18 17 37 37 H 1.08999 * 109.51186 * 176.40713 * 20 19 18 38 38 H 1.08997 * 109.55974 * 56.27539 * 20 19 18 39 39 H 1.09003 * 117.50180 * 0.02562 * 23 9 7 40 40 H 1.08998 * 117.50176 * 145.00036 * 23 9 7 41 41 H 1.08997 * 117.49447 * 107.50201 * 24 23 9 42 42 H 1.08999 * 117.49818 * 252.52277 * 24 23 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.1028 1.6965 -1.2125 5 1 1.2840 2.7465 -0.0006 6 1 3.1028 1.6966 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0755 -1.1993 -0.1393 9 6 1.2639 -2.4917 0.1963 10 6 0.5639 -3.0461 -1.0460 11 7 1.4089 -2.8201 -2.2262 12 6 0.7219 -3.2419 -3.4542 13 1 -0.0533 -3.9861 -3.2721 14 6 0.2598 -2.0687 -4.3378 15 6 1.6486 -2.1381 -4.9818 16 1 2.3696 -1.5622 -4.4017 17 6 1.6812 -1.7940 -6.4597 18 6 1.0394 -2.8216 -7.3715 19 6 1.4948 -4.2333 -7.0133 20 6 1.0117 -4.5644 -5.6000 21 6 1.6817 -3.6156 -4.6040 22 1 2.6587 -3.9653 -4.2703 23 6 0.5888 -2.7226 1.5497 24 6 1.8544 -3.5009 1.1842 25 1 -0.4850 0.8400 0.0004 26 1 0.3937 -4.1155 -0.9204 27 1 -0.3918 -2.5395 -1.1811 28 1 2.2974 -3.2886 -2.1298 29 1 -0.5526 -2.3250 -5.0179 30 1 0.0782 -1.1474 -3.7845 31 1 2.7252 -1.6775 -6.7506 32 1 1.1747 -0.8396 -6.6037 33 1 1.3170 -2.6071 -8.4034 34 1 -0.0443 -2.7594 -7.2723 35 1 2.5829 -4.2862 -7.0492 36 1 1.0710 -4.9464 -7.7206 37 1 1.2759 -5.5936 -5.3567 38 1 -0.0702 -4.4438 -5.5466 39 1 0.6801 -1.9357 2.2985 40 1 -0.3542 -3.2691 1.5551 41 1 2.7786 -3.2262 1.6927 42 1 1.7439 -4.5594 0.9487 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000712510629.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:12:15 Heat of formation + Delta-G solvation = 15.685246 kcal Electronic energy + Delta-G solvation = -18983.724820 eV Core-core repulsion = 16349.528068 eV Total energy + Delta-G solvation = -2634.196751 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 249.179 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.37388 -38.58409 -35.99519 -33.87248 -33.17586 -31.87537 -27.67741 -27.00300 -26.22842 -24.18751 -23.33951 -22.90652 -21.13833 -20.77849 -18.60188 -17.93618 -17.04492 -16.67384 -16.26327 -15.67086 -15.52406 -15.27221 -14.81072 -14.52154 -14.33972 -13.82259 -13.57484 -13.46503 -13.12431 -12.85529 -12.73795 -12.59156 -12.45674 -12.32601 -12.07016 -11.96267 -11.79946 -11.55625 -11.36244 -10.97040 -10.70811 -10.63397 -10.55683 -10.29041 -9.86824 -8.86939 -7.97456 -6.00613 1.43834 1.44690 1.50547 2.51043 3.27840 3.36092 3.54030 3.65926 3.71128 3.99218 4.01944 4.22852 4.25668 4.41121 4.49262 4.53057 4.55555 4.59721 4.71237 4.78948 4.79182 4.81664 4.92376 4.97395 4.99785 5.10051 5.13915 5.20985 5.24944 5.28455 5.31042 5.35230 5.39568 5.55840 5.61745 5.66897 5.71715 5.77943 5.91353 6.44087 6.64486 6.85321 7.00409 7.63065 9.12342 Molecular weight = 249.18amu Principal moments of inertia in cm(-1) A = 0.023316 B = 0.006566 C = 0.005535 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1200.608276 B = 4263.522078 C = 5057.272296 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.908 5.908 2 C 0.031 3.969 3 Si 0.936 3.064 4 H -0.277 1.277 5 H -0.291 1.291 6 H -0.275 1.275 7 C -0.468 4.468 8 H 0.046 0.954 9 C 0.021 3.979 10 C 0.129 3.871 11 N -0.652 5.652 12 C 0.060 3.940 13 H 0.043 0.957 14 C -0.130 4.130 15 C -0.085 4.085 16 H 0.064 0.936 17 C -0.104 4.104 18 C -0.111 4.111 19 C -0.111 4.111 20 C -0.097 4.097 21 C -0.091 4.091 22 H 0.074 0.926 23 C -0.173 4.173 24 C -0.189 4.189 25 H 0.252 0.748 26 H 0.007 0.993 27 H 0.036 0.964 28 H 0.336 0.664 29 H 0.086 0.914 30 H 0.033 0.967 31 H 0.058 0.942 32 H 0.054 0.946 33 H 0.075 0.925 34 H 0.056 0.944 35 H 0.064 0.936 36 H 0.078 0.922 37 H 0.072 0.928 38 H 0.061 0.939 39 H 0.057 0.943 40 H 0.070 0.930 41 H 0.077 0.923 42 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.977 -8.791 -13.222 16.000 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.547 5.547 2 C -0.168 4.168 3 Si 0.764 3.236 4 H -0.203 1.203 5 H -0.217 1.217 6 H -0.200 1.200 7 C -0.506 4.506 8 H 0.064 0.936 9 C 0.020 3.980 10 C 0.000 4.000 11 N -0.283 5.283 12 C -0.050 4.050 13 H 0.060 0.940 14 C -0.168 4.168 15 C -0.103 4.103 16 H 0.082 0.918 17 C -0.142 4.142 18 C -0.149 4.149 19 C -0.148 4.148 20 C -0.135 4.135 21 C -0.111 4.111 22 H 0.092 0.908 23 C -0.211 4.211 24 C -0.226 4.226 25 H 0.061 0.939 26 H 0.024 0.976 27 H 0.054 0.946 28 H 0.154 0.846 29 H 0.104 0.896 30 H 0.052 0.948 31 H 0.077 0.923 32 H 0.073 0.927 33 H 0.093 0.907 34 H 0.075 0.925 35 H 0.082 0.918 36 H 0.096 0.904 37 H 0.091 0.909 38 H 0.079 0.921 39 H 0.076 0.924 40 H 0.089 0.911 41 H 0.096 0.904 42 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 1.643 -7.991 -13.273 15.580 hybrid contribution 0.142 0.489 0.736 0.895 sum 1.785 -7.503 -12.537 14.719 Atomic orbital electron populations 1.70108 1.06888 1.26185 1.51557 1.25421 0.95233 1.01075 0.95064 0.85968 0.78593 0.80689 0.78379 1.20254 1.21721 1.20047 1.20286 0.92416 0.89853 1.48022 0.93600 1.19065 0.97782 0.94032 0.87076 1.21144 0.95215 0.93530 0.90110 1.59927 1.05480 1.62420 1.00443 1.22934 0.96606 0.95676 0.89803 0.93953 1.22970 0.97606 0.98289 0.97964 1.21641 0.96921 0.96228 0.95516 0.91792 1.20783 1.01050 0.99077 0.93268 1.21115 1.00249 0.94619 0.98877 1.21357 1.01201 0.96587 0.95681 1.21358 0.99746 0.97992 0.94383 1.22504 0.98140 0.95174 0.95236 0.90795 1.22475 0.94732 1.01752 1.02152 1.23054 0.96488 0.96276 1.06762 0.93938 0.97553 0.94558 0.84564 0.89559 0.94800 0.92332 0.92749 0.90674 0.92524 0.91769 0.90362 0.90941 0.92060 0.92382 0.91147 0.90417 0.89308 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -53.49 13.20 21.45 0.28 -53.20 16 2 C 0.03 1.76 5.41 84.65 0.46 2.21 16 3 Si 0.94 45.19 29.55 68.60 2.03 47.22 16 4 H -0.28 -13.22 7.11 99.48 0.71 -12.51 16 5 H -0.29 -13.98 7.11 99.48 0.71 -13.28 16 6 H -0.27 -12.90 7.11 99.48 0.71 -12.20 16 7 C -0.47 -25.62 8.11 25.60 0.21 -25.41 16 8 H 0.05 2.54 7.83 -2.91 -0.02 2.51 16 9 C 0.02 1.04 1.65 -52.91 -0.09 0.95 16 10 C 0.13 5.90 5.61 86.30 0.48 6.38 16 11 N -0.65 -26.99 5.66 -487.70 -2.76 -29.75 16 12 C 0.06 2.07 3.65 45.67 0.17 2.23 16 13 H 0.04 1.45 7.73 -2.39 -0.02 1.43 16 14 C -0.13 -4.47 7.07 31.00 0.22 -4.25 16 15 C -0.08 -2.54 3.67 -11.31 -0.04 -2.58 16 16 H 0.06 2.30 8.11 -2.39 -0.02 2.28 16 17 C -0.10 -2.49 5.48 29.75 0.16 -2.33 16 18 C -0.11 -2.10 5.76 30.01 0.17 -1.93 16 19 C -0.11 -1.95 5.90 30.46 0.18 -1.77 16 20 C -0.10 -2.04 5.40 30.59 0.17 -1.88 16 21 C -0.09 -2.48 3.90 -10.48 -0.04 -2.52 16 22 H 0.07 2.00 7.95 -2.39 -0.02 1.98 16 23 C -0.17 -8.18 9.79 30.60 0.30 -7.88 16 24 C -0.19 -7.97 9.89 30.62 0.30 -7.66 16 25 H 0.25 14.43 8.31 -92.71 -0.77 13.66 16 26 H 0.01 0.27 7.94 -2.38 -0.02 0.25 16 27 H 0.04 1.89 8.13 -2.38 -0.02 1.87 16 28 H 0.34 13.07 8.47 -89.69 -0.76 12.31 16 29 H 0.09 2.59 7.48 -2.38 -0.02 2.57 16 30 H 0.03 1.44 8.14 -2.39 -0.02 1.42 16 31 H 0.06 1.31 8.14 -2.39 -0.02 1.30 16 32 H 0.05 1.34 8.14 -2.39 -0.02 1.32 16 33 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 34 H 0.06 1.10 7.96 -2.39 -0.02 1.08 16 35 H 0.06 1.11 8.14 -2.39 -0.02 1.10 16 36 H 0.08 1.10 8.14 -2.39 -0.02 1.08 16 37 H 0.07 1.36 8.14 -2.39 -0.02 1.34 16 38 H 0.06 1.34 7.25 -2.39 -0.02 1.32 16 39 H 0.06 2.95 8.14 -2.39 -0.02 2.93 16 40 H 0.07 3.13 8.14 -2.39 -0.02 3.11 16 41 H 0.08 3.24 8.14 -2.39 -0.02 3.22 16 42 H 0.09 3.25 8.08 -2.39 -0.02 3.24 16 Total: -1.00 -60.07 327.68 2.40 -57.67 By element: Atomic # 1 Polarization: 24.29 SS G_CDS: 0.21 Total: 24.49 kcal Atomic # 6 Polarization: -49.08 SS G_CDS: 2.65 Total: -46.43 kcal Atomic # 7 Polarization: -80.47 SS G_CDS: -2.48 Total: -82.95 kcal Atomic # 14 Polarization: 45.19 SS G_CDS: 2.03 Total: 47.22 kcal Total: -60.07 2.40 -57.67 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000712510629.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.356 kcal (2) G-P(sol) polarization free energy of solvation -60.074 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.281 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.404 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.671 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.685 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds