Wall clock time and date at job start Mon Mar 30 2020 06:53:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86800 * 119.99983 * 2 1 4 4 H 1.48500 * 109.46925 * 85.01612 * 3 2 1 5 5 H 1.48499 * 109.47411 * 205.01359 * 3 2 1 6 6 H 1.48500 * 109.47251 * 325.01429 * 3 2 1 7 7 C 1.37878 * 119.99889 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99907 * 182.55685 * 7 2 1 9 9 C 1.50695 * 120.00261 * 2.55731 * 7 2 1 10 10 H 1.09002 * 110.64343 * 57.74530 * 9 7 2 11 11 C 1.54597 * 110.72126 * 294.59923 * 9 7 2 12 12 C 1.53997 * 105.13762 * 219.68026 * 11 9 7 13 13 N 1.47908 * 107.05712 * 358.77738 * 12 11 9 14 14 C 1.46897 * 110.99881 * 145.84131 * 13 12 11 15 15 C 1.52996 * 109.47319 * 184.16730 * 14 13 12 16 16 C 1.52997 * 109.47480 * 185.51979 * 15 14 13 17 17 H 1.08997 * 115.54927 * 29.32975 * 16 15 14 18 18 C 1.53004 * 117.49730 * 243.62616 * 16 15 14 19 19 C 1.52997 * 117.50066 * 175.00522 * 16 15 14 20 20 H 1.09006 * 117.49593 * 359.97438 * 19 16 15 21 21 C 1.53000 * 117.49800 * 214.97891 * 19 16 15 22 22 C 1.53002 * 117.49753 * 128.61720 * 21 19 16 23 23 C 1.53001 * 117.49950 * 59.99511 * 21 19 16 24 24 C 1.48526 * 105.81891 * 25.32829 * 13 12 11 25 25 H 0.96997 * 120.00112 * 0.02562 * 1 2 3 26 26 H 1.08997 * 110.30803 * 338.59874 * 11 9 7 27 27 H 1.09000 * 110.30909 * 100.77175 * 11 9 7 28 28 H 1.08996 * 109.91406 * 118.12907 * 12 11 9 29 29 H 1.08994 * 109.91860 * 239.22640 * 12 11 9 30 30 H 1.09001 * 109.47727 * 304.17006 * 14 13 12 31 31 H 1.09006 * 109.47430 * 64.16695 * 14 13 12 32 32 H 1.09003 * 109.47148 * 305.51885 * 15 14 13 33 33 H 1.09004 * 109.46696 * 65.51829 * 15 14 13 34 34 H 1.08997 * 117.49972 * 359.97438 * 18 16 15 35 35 H 1.08996 * 117.50079 * 145.01808 * 18 16 15 36 36 H 1.09002 * 115.54828 * 274.32310 * 21 19 16 37 37 H 1.08995 * 117.50452 * 0.02562 * 22 21 19 38 38 H 1.09006 * 117.49395 * 145.02210 * 22 21 19 39 39 H 1.08998 * 117.49776 * 214.97840 * 23 21 19 40 40 H 1.08995 * 117.49819 * 0.02562 * 23 21 19 41 41 H 1.08998 * 110.66657 * 202.35972 * 24 13 12 42 42 H 1.08993 * 110.67047 * 79.22999 * 24 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.3912 2.1072 1.3948 5 1 3.5954 1.4121 -0.5920 6 1 1.5032 2.6200 -0.8028 7 6 2.0045 -1.1941 0.0005 8 1 3.0837 -1.1945 0.0423 9 6 1.2522 -2.4985 -0.0571 10 1 0.6224 -2.5400 -0.9459 11 6 0.4073 -2.6997 1.2218 12 6 0.5451 -4.1948 1.5639 13 7 1.3944 -4.8029 0.5166 14 6 2.2302 -5.8750 1.0735 15 6 3.1665 -6.4081 -0.0128 16 6 3.9388 -7.6138 0.5262 17 1 3.4240 -8.1996 1.2877 18 6 5.4591 -7.4851 0.6412 19 6 4.8461 -8.3654 -0.4498 20 1 4.8925 -8.0011 -1.4761 21 6 4.9618 -9.8818 -0.2820 22 6 4.7279 -10.7495 -1.5203 23 6 3.6790 -10.7063 -0.4072 24 6 2.2314 -3.6985 -0.0177 25 1 -0.4850 0.8400 -0.0004 26 1 0.7993 -2.0880 2.0343 27 1 -0.6362 -2.4504 1.0290 28 1 1.0181 -4.3105 2.5390 29 1 -0.4374 -4.6666 1.5696 30 1 2.8206 -5.4826 1.9015 31 1 1.5930 -6.6832 1.4326 32 1 2.5809 -6.7103 -0.8810 33 1 3.8690 -5.6265 -0.3025 34 1 5.9090 -6.5416 0.3324 35 1 5.9447 -7.9862 1.4785 36 1 5.7092 -10.2196 0.4359 37 1 4.4921 -10.2401 -2.4546 38 1 5.3217 -11.6585 -1.6173 39 1 3.5828 -11.5868 0.2280 40 1 2.7529 -10.1685 -0.6095 41 1 2.5885 -3.9366 -1.0197 42 1 3.0672 -3.4912 0.6505 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000714840443.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:53:03 Heat of formation + Delta-G solvation = 34.956402 kcal Electronic energy + Delta-G solvation = -17934.601372 eV Core-core repulsion = 15301.240281 eV Total energy + Delta-G solvation = -2633.361091 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 249.179 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -38.99440 -37.94184 -35.70292 -33.32148 -31.45537 -28.67475 -27.65131 -24.76670 -23.77618 -22.66411 -22.44493 -20.68398 -20.03222 -19.69639 -19.19043 -16.35945 -15.90422 -15.53914 -14.95133 -14.75680 -14.32884 -14.06546 -13.58473 -13.32009 -12.79032 -12.31117 -11.99044 -11.92749 -11.77267 -11.55921 -11.18567 -11.14295 -11.03043 -10.99180 -10.69217 -10.61897 -10.51651 -10.42265 -10.15453 -9.81927 -9.64635 -9.40594 -9.16858 -8.74146 -8.37140 -7.68823 -6.00264 -4.03334 3.30652 3.37922 3.41376 3.44295 3.87868 4.35069 4.44172 4.66894 4.69579 4.81568 4.96412 5.01412 5.19840 5.29981 5.33227 5.45292 5.45941 5.55529 5.68729 5.70811 5.78644 5.88456 5.93045 5.95222 6.03041 6.11229 6.13080 6.14315 6.30579 6.34713 6.48960 6.52795 6.59923 6.89912 7.18106 7.20976 7.62315 7.70258 7.79417 7.91356 8.06676 8.47596 8.99615 9.60693 11.09687 Molecular weight = 249.18amu Principal moments of inertia in cm(-1) A = 0.037946 B = 0.003762 C = 0.003574 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 737.709476 B = 7440.873740 C = 7832.740221 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.887 5.887 2 C 0.063 3.937 3 Si 0.890 3.110 4 H -0.282 1.282 5 H -0.274 1.274 6 H -0.286 1.286 7 C -0.515 4.515 8 H 0.055 0.945 9 C 0.051 3.949 10 H 0.037 0.963 11 C -0.104 4.104 12 C 0.034 3.966 13 N -0.524 5.524 14 C 0.053 3.947 15 C -0.086 4.086 16 C -0.136 4.136 17 H 0.103 0.897 18 C -0.174 4.174 19 C -0.125 4.125 20 H 0.105 0.895 21 C -0.123 4.123 22 C -0.179 4.179 23 C -0.177 4.177 24 C 0.042 3.958 25 H 0.260 0.740 26 H 0.053 0.947 27 H 0.059 0.941 28 H 0.026 0.974 29 H 0.060 0.940 30 H 0.028 0.972 31 H 0.064 0.936 32 H 0.072 0.928 33 H 0.065 0.935 34 H 0.095 0.905 35 H 0.090 0.910 36 H 0.102 0.898 37 H 0.094 0.906 38 H 0.091 0.909 39 H 0.091 0.909 40 H 0.097 0.903 41 H 0.061 0.939 42 H 0.032 0.968 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.574 -17.618 0.997 19.203 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.526 5.526 2 C -0.139 4.139 3 Si 0.718 3.282 4 H -0.208 1.208 5 H -0.199 1.199 6 H -0.212 1.212 7 C -0.554 4.554 8 H 0.073 0.927 9 C 0.032 3.968 10 H 0.055 0.945 11 C -0.143 4.143 12 C -0.093 4.093 13 N -0.248 5.248 14 C -0.076 4.076 15 C -0.124 4.124 16 C -0.155 4.155 17 H 0.121 0.879 18 C -0.211 4.211 19 C -0.143 4.143 20 H 0.123 0.877 21 C -0.141 4.141 22 C -0.216 4.216 23 C -0.214 4.214 24 C -0.085 4.085 25 H 0.069 0.931 26 H 0.072 0.928 27 H 0.078 0.922 28 H 0.045 0.955 29 H 0.079 0.921 30 H 0.046 0.954 31 H 0.082 0.918 32 H 0.091 0.909 33 H 0.083 0.917 34 H 0.113 0.887 35 H 0.109 0.891 36 H 0.120 0.880 37 H 0.113 0.887 38 H 0.109 0.891 39 H 0.109 0.891 40 H 0.116 0.884 41 H 0.080 0.920 42 H 0.051 0.949 Dipole moment (debyes) X Y Z Total from point charges 7.093 -17.738 0.591 19.112 hybrid contribution 0.969 1.231 0.789 1.754 sum 8.061 -16.507 1.381 18.422 Atomic orbital electron populations 1.69980 1.05881 1.26439 1.50251 1.24975 0.94834 0.99010 0.95084 0.86621 0.80002 0.83720 0.77899 1.20850 1.19871 1.21189 1.21109 0.92835 0.90470 1.50991 0.92688 1.19543 0.92208 0.90893 0.94117 0.94454 1.22347 1.01385 0.90321 1.00205 1.22941 0.96588 0.97635 0.92180 1.64773 1.19893 1.09772 1.30351 1.22179 0.94568 0.95295 0.95538 1.21193 0.97535 0.95071 0.98603 1.22426 0.92046 0.99490 1.01494 0.87922 1.23154 0.96070 1.01356 1.00471 1.21847 1.05672 0.90779 0.96026 0.87743 1.21742 1.00073 0.91300 1.00957 1.22972 1.03260 1.01736 0.93606 1.22971 0.94047 1.02090 1.02333 1.23346 0.95818 0.91444 0.97891 0.93070 0.92844 0.92203 0.95538 0.92131 0.95417 0.91778 0.90921 0.91659 0.88705 0.89127 0.87995 0.88721 0.89059 0.89088 0.88427 0.92014 0.94934 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.71 12.63 55.43 0.70 -25.01 16 2 C 0.06 1.76 5.37 -17.82 -0.10 1.66 16 3 Si 0.89 21.36 29.54 -169.99 -5.02 16.34 16 4 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 5 H -0.27 -6.48 7.11 56.52 0.40 -6.07 16 6 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 7 C -0.52 -14.26 8.38 -34.44 -0.29 -14.55 16 8 H 0.05 1.50 7.77 -52.49 -0.41 1.09 16 9 C 0.05 1.31 2.94 -89.92 -0.26 1.05 16 10 H 0.04 1.04 8.14 -51.93 -0.42 0.62 16 11 C -0.10 -2.48 5.68 -25.37 -0.14 -2.63 16 12 C 0.03 0.69 6.70 -2.75 -0.02 0.67 16 13 N -0.52 -10.19 5.35 -230.46 -1.23 -11.43 16 14 C 0.05 0.84 4.80 -3.83 -0.02 0.82 16 15 C -0.09 -1.20 5.17 -26.73 -0.14 -1.34 16 16 C -0.14 -1.57 5.38 -90.62 -0.49 -2.06 16 17 H 0.10 1.16 8.07 -51.93 -0.42 0.74 16 18 C -0.17 -1.85 9.90 -26.73 -0.26 -2.11 16 19 C -0.13 -1.31 5.59 -90.62 -0.51 -1.82 16 20 H 0.10 1.13 8.14 -51.93 -0.42 0.71 16 21 C -0.12 -1.13 5.87 -90.62 -0.53 -1.67 16 22 C -0.18 -1.50 10.25 -26.73 -0.27 -1.78 16 23 C -0.18 -1.56 10.18 -26.73 -0.27 -1.83 16 24 C 0.04 0.91 4.78 -1.90 -0.01 0.90 16 25 H 0.26 7.16 8.31 -40.82 -0.34 6.83 16 26 H 0.05 1.34 7.84 -51.93 -0.41 0.94 16 27 H 0.06 1.50 8.12 -51.93 -0.42 1.08 16 28 H 0.03 0.50 7.67 -51.93 -0.40 0.10 16 29 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 30 H 0.03 0.45 7.97 -51.93 -0.41 0.04 16 31 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 32 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 33 H 0.06 0.96 6.94 -51.93 -0.36 0.60 16 34 H 0.09 1.04 8.03 -51.93 -0.42 0.62 16 35 H 0.09 0.87 8.14 -51.93 -0.42 0.45 16 36 H 0.10 0.88 8.14 -51.93 -0.42 0.46 16 37 H 0.09 0.80 8.14 -51.93 -0.42 0.38 16 38 H 0.09 0.66 8.14 -51.93 -0.42 0.24 16 39 H 0.09 0.70 8.14 -51.93 -0.42 0.28 16 40 H 0.10 0.92 8.14 -51.93 -0.42 0.50 16 41 H 0.06 1.28 7.78 -51.93 -0.40 0.88 16 42 H 0.03 0.71 7.91 -51.93 -0.41 0.30 16 LS Contribution 335.79 15.07 5.06 5.06 Total: -1.00 -28.20 335.79 -11.65 -39.85 By element: Atomic # 1 Polarization: 7.72 SS G_CDS: -7.85 Total: -0.12 kcal Atomic # 6 Polarization: -21.37 SS G_CDS: -3.31 Total: -24.68 kcal Atomic # 7 Polarization: -35.91 SS G_CDS: -0.53 Total: -36.44 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -5.02 Total: 16.34 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -28.20 -11.65 -39.85 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000714840443.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.807 kcal (2) G-P(sol) polarization free energy of solvation -28.199 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.609 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.652 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.851 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.956 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds