Wall clock time and date at job start Mon Mar 30 2020 06:53:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86798 * 119.99492 * 2 1 4 4 H 1.48501 * 109.47103 * 90.00654 * 3 2 1 5 5 H 1.48505 * 109.46796 * 210.00253 * 3 2 1 6 6 H 1.48500 * 109.47641 * 330.00166 * 3 2 1 7 7 C 1.37870 * 120.00336 * 179.72982 * 2 1 3 8 8 H 1.07998 * 120.00645 * 179.97438 * 7 2 1 9 9 C 1.50707 * 120.00171 * 359.97438 * 7 2 1 10 10 H 1.09005 * 110.64247 * 59.30050 * 9 7 2 11 11 C 1.54590 * 110.72346 * 296.15322 * 9 7 2 12 12 C 1.53999 * 105.14016 * 219.68075 * 11 9 7 13 13 N 1.47897 * 107.05693 * 358.77394 * 12 11 9 14 14 C 1.46894 * 111.00245 * 145.83948 * 13 12 11 15 15 C 1.53001 * 109.47362 * 184.29009 * 14 13 12 16 16 C 1.53006 * 109.46935 * 185.15248 * 15 14 13 17 17 H 1.09001 * 115.55039 * 330.66717 * 16 15 14 18 18 C 1.53004 * 117.49532 * 116.37942 * 16 15 14 19 19 C 1.52999 * 117.49660 * 185.00137 * 16 15 14 20 20 H 1.08994 * 117.50183 * 145.01883 * 19 16 15 21 21 C 1.53002 * 117.49870 * 359.97438 * 19 16 15 22 22 C 1.53001 * 117.50086 * 128.74965 * 21 19 16 23 23 C 1.52998 * 117.50141 * 60.08571 * 21 19 16 24 24 C 1.48738 * 105.94149 * 25.20079 * 13 12 11 25 25 H 0.97004 * 119.99630 * 179.97438 * 1 2 3 26 26 H 1.09006 * 110.31076 * 338.59581 * 11 9 7 27 27 H 1.09007 * 110.31180 * 100.66509 * 11 9 7 28 28 H 1.08997 * 109.91557 * 118.12625 * 12 11 9 29 29 H 1.08996 * 109.91559 * 239.22053 * 12 11 9 30 30 H 1.09004 * 109.47456 * 304.29716 * 14 13 12 31 31 H 1.09008 * 109.46655 * 64.29335 * 14 13 12 32 32 H 1.09000 * 109.47140 * 305.15087 * 15 14 13 33 33 H 1.08997 * 109.47087 * 65.15330 * 15 14 13 34 34 H 1.09002 * 117.49108 * 214.97329 * 18 16 15 35 35 H 1.08993 * 117.50277 * 359.97438 * 18 16 15 36 36 H 1.09007 * 115.54869 * 274.41859 * 21 19 16 37 37 H 1.08994 * 117.49558 * 359.97438 * 22 21 19 38 38 H 1.08997 * 117.49981 * 145.02014 * 22 21 19 39 39 H 1.08995 * 117.50154 * 214.98012 * 23 21 19 40 40 H 1.09007 * 117.49757 * 359.97438 * 23 21 19 41 41 H 1.09007 * 110.83404 * 202.57720 * 24 13 12 42 42 H 1.08996 * 110.58371 * 79.38406 * 24 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4967 2.0464 1.4001 5 1 3.5466 1.4403 -0.7001 6 1 1.4465 2.6528 -0.7000 7 6 2.0046 -1.1939 0.0056 8 1 3.0846 -1.1940 0.0052 9 6 1.2512 -2.4991 0.0124 10 1 0.6077 -2.5759 -0.8641 11 6 0.4263 -2.6479 1.3113 12 6 0.5692 -4.1282 1.7112 13 7 1.4018 -4.7787 0.6764 14 6 2.2461 -5.8280 1.2629 15 6 3.1674 -6.4031 0.1852 16 6 3.9546 -7.5811 0.7628 17 1 4.1545 -7.5333 1.8333 18 6 3.7111 -8.9618 0.1501 19 6 5.0215 -8.2220 -0.1270 20 1 5.9230 -8.5962 0.3579 21 6 5.2190 -7.6363 -1.5266 22 6 6.6438 -7.2648 -1.9424 23 6 5.6271 -6.1651 -1.6257 24 6 2.2309 -3.6974 0.0799 25 1 -0.4850 -0.8401 -0.0004 26 1 0.8311 -2.0042 2.0924 27 1 -0.6197 -2.4040 1.1253 28 1 1.0572 -4.2048 2.6828 29 1 -0.4133 -4.5984 1.7513 30 1 2.8477 -5.4035 2.0666 31 1 1.6144 -6.6216 1.6622 32 1 2.5693 -6.7451 -0.6595 33 1 3.8609 -5.6317 -0.1494 34 1 3.7508 -9.8226 0.8176 35 1 2.9899 -9.0310 -0.6641 36 1 4.5555 -8.0276 -2.2980 37 1 7.4403 -7.4372 -1.2186 38 1 6.9176 -7.4112 -2.9872 39 1 5.2325 -5.5886 -2.4623 40 1 5.7545 -5.6143 -0.6937 41 1 2.5694 -3.9744 -0.9186 42 1 3.0789 -3.4652 0.7241 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000714840457.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:53:10 Heat of formation + Delta-G solvation = 34.270182 kcal Electronic energy + Delta-G solvation = -18402.534964 eV Core-core repulsion = 15769.144116 eV Total energy + Delta-G solvation = -2633.390848 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 249.179 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -39.18157 -38.02417 -35.47090 -33.67266 -31.41184 -28.53147 -27.77625 -24.38610 -23.80547 -22.91033 -22.18489 -21.15932 -19.98474 -19.75969 -18.99263 -16.84216 -15.74846 -15.57225 -15.21369 -14.57111 -14.34566 -13.88445 -13.73854 -13.17728 -12.99022 -12.52299 -12.18962 -11.71487 -11.66320 -11.52062 -11.39915 -11.20423 -10.97200 -10.88416 -10.73898 -10.50617 -10.41043 -10.38340 -10.08899 -9.80161 -9.68071 -9.44669 -9.34774 -8.46043 -8.32073 -7.78814 -6.31323 -4.03202 3.44172 3.47544 3.52915 3.63352 3.89875 4.39437 4.52251 4.57819 4.79432 4.85920 4.99909 5.04160 5.25538 5.30770 5.38432 5.40775 5.50773 5.58792 5.67080 5.70585 5.74799 5.88804 5.91886 6.01210 6.02993 6.06486 6.08353 6.13965 6.18538 6.27053 6.41743 6.42808 6.52955 6.72694 6.96075 6.97937 7.29299 7.51160 7.65833 7.78051 8.29507 8.46450 8.91916 9.69394 11.07572 Molecular weight = 249.18amu Principal moments of inertia in cm(-1) A = 0.024930 B = 0.004959 C = 0.004285 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1122.861819 B = 5644.647123 C = 6532.568187 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.913 5.913 2 C 0.020 3.980 3 Si 1.069 2.931 4 H -0.289 1.289 5 H -0.289 1.289 6 H -0.284 1.284 7 C -0.595 4.595 8 H 0.048 0.952 9 C 0.035 3.965 10 H 0.028 0.972 11 C -0.121 4.121 12 C 0.039 3.961 13 N -0.525 5.525 14 C 0.051 3.949 15 C -0.086 4.086 16 C -0.140 4.140 17 H 0.100 0.900 18 C -0.173 4.173 19 C -0.124 4.124 20 H 0.101 0.899 21 C -0.122 4.122 22 C -0.181 4.181 23 C -0.172 4.172 24 C 0.052 3.948 25 H 0.273 0.727 26 H 0.059 0.941 27 H 0.053 0.947 28 H 0.029 0.971 29 H 0.062 0.938 30 H 0.026 0.974 31 H 0.065 0.935 32 H 0.069 0.931 33 H 0.074 0.926 34 H 0.090 0.910 35 H 0.095 0.905 36 H 0.103 0.897 37 H 0.091 0.909 38 H 0.091 0.909 39 H 0.095 0.905 40 H 0.097 0.903 41 H 0.063 0.937 42 H 0.034 0.966 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.915 -15.519 0.406 17.903 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.549 5.549 2 C -0.184 4.184 3 Si 0.898 3.102 4 H -0.216 1.216 5 H -0.215 1.215 6 H -0.210 1.210 7 C -0.633 4.633 8 H 0.067 0.933 9 C 0.016 3.984 10 H 0.046 0.954 11 C -0.160 4.160 12 C -0.089 4.089 13 N -0.249 5.249 14 C -0.077 4.077 15 C -0.123 4.123 16 C -0.158 4.158 17 H 0.118 0.882 18 C -0.210 4.210 19 C -0.142 4.142 20 H 0.119 0.881 21 C -0.140 4.140 22 C -0.218 4.218 23 C -0.209 4.209 24 C -0.075 4.075 25 H 0.084 0.916 26 H 0.078 0.922 27 H 0.071 0.929 28 H 0.047 0.953 29 H 0.080 0.920 30 H 0.044 0.956 31 H 0.083 0.917 32 H 0.088 0.912 33 H 0.093 0.907 34 H 0.109 0.891 35 H 0.113 0.887 36 H 0.121 0.879 37 H 0.109 0.891 38 H 0.110 0.890 39 H 0.114 0.886 40 H 0.115 0.885 41 H 0.082 0.918 42 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges 8.386 -14.131 0.015 16.432 hybrid contribution 0.728 -1.410 0.792 1.773 sum 9.114 -15.541 0.807 18.034 Atomic orbital electron populations 1.70751 1.06840 1.31098 1.46215 1.25758 0.96562 1.02434 0.93664 0.83547 0.74725 0.75303 0.76672 1.21586 1.21537 1.21014 1.21956 0.93978 0.91371 1.56035 0.93341 1.19702 0.92992 0.92767 0.92939 0.95433 1.22621 1.00503 0.92126 1.00730 1.22845 0.96976 0.96453 0.92639 1.64769 1.20773 1.11038 1.28303 1.22210 0.94735 0.95183 0.95591 1.21221 0.97125 0.95906 0.98080 1.22395 1.01275 0.94088 0.98076 0.88186 1.23110 0.99123 0.95297 1.03429 1.21799 0.93322 1.03945 0.95108 0.88064 1.21657 0.98063 0.98093 0.96148 1.22985 0.92482 1.04535 1.01805 1.23015 1.03043 0.91314 1.03501 1.23234 0.95587 0.90976 0.97722 0.91553 0.92248 0.92861 0.95259 0.91953 0.95560 0.91699 0.91203 0.90735 0.89145 0.88696 0.87906 0.89066 0.89041 0.88612 0.88474 0.91811 0.94758 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -27.43 13.45 55.43 0.75 -26.69 16 2 C 0.02 0.58 5.34 -17.82 -0.10 0.48 16 3 Si 1.07 25.22 29.90 -169.99 -5.08 20.14 16 4 H -0.29 -6.60 7.11 56.52 0.40 -6.20 16 5 H -0.29 -6.51 7.11 56.52 0.40 -6.11 16 6 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 7 C -0.59 -16.69 8.40 -34.44 -0.29 -16.98 16 8 H 0.05 1.35 7.78 -52.49 -0.41 0.95 16 9 C 0.04 0.89 2.57 -89.92 -0.23 0.66 16 10 H 0.03 0.76 8.00 -51.93 -0.42 0.35 16 11 C -0.12 -2.85 5.47 -25.37 -0.14 -2.99 16 12 C 0.04 0.77 6.70 -2.75 -0.02 0.75 16 13 N -0.52 -10.14 5.35 -230.28 -1.23 -11.38 16 14 C 0.05 0.82 4.80 -3.83 -0.02 0.80 16 15 C -0.09 -1.19 4.13 -26.73 -0.11 -1.30 16 16 C -0.14 -1.61 5.72 -90.62 -0.52 -2.12 16 17 H 0.10 1.11 8.07 -51.93 -0.42 0.69 16 18 C -0.17 -1.75 9.90 -26.73 -0.26 -2.02 16 19 C -0.12 -1.29 5.87 -90.62 -0.53 -1.82 16 20 H 0.10 0.98 8.14 -51.93 -0.42 0.55 16 21 C -0.12 -1.29 5.25 -90.62 -0.48 -1.77 16 22 C -0.18 -1.77 10.26 -26.69 -0.27 -2.04 16 23 C -0.17 -1.96 8.45 -26.69 -0.23 -2.18 16 24 C 0.05 1.12 4.79 -1.79 -0.01 1.11 16 25 H 0.27 8.14 5.67 -40.82 -0.23 7.91 16 26 H 0.06 1.49 7.84 -51.93 -0.41 1.08 16 27 H 0.05 1.28 7.08 -51.93 -0.37 0.91 16 28 H 0.03 0.54 7.67 -51.93 -0.40 0.15 16 29 H 0.06 1.15 8.14 -51.93 -0.42 0.72 16 30 H 0.03 0.43 7.97 -51.93 -0.41 0.01 16 31 H 0.06 0.96 8.14 -51.92 -0.42 0.54 16 32 H 0.07 1.02 7.88 -51.93 -0.41 0.61 16 33 H 0.07 1.10 4.68 -51.93 -0.24 0.86 16 34 H 0.09 0.80 8.14 -51.93 -0.42 0.38 16 35 H 0.09 0.98 8.03 -51.93 -0.42 0.56 16 36 H 0.10 1.09 8.14 -51.93 -0.42 0.66 16 37 H 0.09 0.83 8.14 -51.93 -0.42 0.41 16 38 H 0.09 0.80 8.14 -51.93 -0.42 0.38 16 39 H 0.10 1.11 8.14 -51.93 -0.42 0.69 16 40 H 0.10 1.19 7.31 -51.93 -0.38 0.81 16 41 H 0.06 1.33 7.79 -51.93 -0.40 0.93 16 42 H 0.03 0.75 7.92 -51.93 -0.41 0.34 16 LS Contribution 326.48 15.07 4.92 4.92 Total: -1.00 -29.19 326.48 -11.35 -40.54 By element: Atomic # 1 Polarization: 9.39 SS G_CDS: -7.50 Total: 1.89 kcal Atomic # 6 Polarization: -26.22 SS G_CDS: -3.20 Total: -29.42 kcal Atomic # 7 Polarization: -37.58 SS G_CDS: -0.49 Total: -38.06 kcal Atomic # 14 Polarization: 25.22 SS G_CDS: -5.08 Total: 20.14 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -29.19 -11.35 -40.54 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000714840457.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.808 kcal (2) G-P(sol) polarization free energy of solvation -29.186 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.622 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.352 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.538 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.270 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds