Wall clock time and date at job start Mon Mar 30 2020 06:53:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86798 * 119.99492 * 2 1 4 4 H 1.48501 * 109.47103 * 90.00654 * 3 2 1 5 5 H 1.48505 * 109.46796 * 210.00253 * 3 2 1 6 6 H 1.48500 * 109.47641 * 330.00166 * 3 2 1 7 7 C 1.37870 * 120.00336 * 179.72982 * 2 1 3 8 8 H 1.07998 * 120.00645 * 179.97438 * 7 2 1 9 9 C 1.50707 * 120.00171 * 359.97438 * 7 2 1 10 10 H 1.09005 * 110.64247 * 59.30050 * 9 7 2 11 11 C 1.54590 * 110.72346 * 296.15322 * 9 7 2 12 12 C 1.53999 * 105.14016 * 219.68075 * 11 9 7 13 13 N 1.47897 * 107.05693 * 358.77394 * 12 11 9 14 14 C 1.46894 * 111.00245 * 145.83948 * 13 12 11 15 15 C 1.53001 * 109.47362 * 184.29009 * 14 13 12 16 16 C 1.53006 * 109.46935 * 185.15248 * 15 14 13 17 17 H 1.09001 * 115.55039 * 330.66717 * 16 15 14 18 18 C 1.53004 * 117.49532 * 116.37942 * 16 15 14 19 19 C 1.52999 * 117.49660 * 185.00137 * 16 15 14 20 20 H 1.08994 * 117.50183 * 145.01883 * 19 16 15 21 21 C 1.53002 * 117.49870 * 359.97438 * 19 16 15 22 22 C 1.53001 * 117.50086 * 128.74965 * 21 19 16 23 23 C 1.52998 * 117.50141 * 60.08571 * 21 19 16 24 24 C 1.48738 * 105.94149 * 25.20079 * 13 12 11 25 25 H 0.97004 * 119.99630 * 179.97438 * 1 2 3 26 26 H 1.09006 * 110.31076 * 338.59581 * 11 9 7 27 27 H 1.09007 * 110.31180 * 100.66509 * 11 9 7 28 28 H 1.08997 * 109.91557 * 118.12625 * 12 11 9 29 29 H 1.08996 * 109.91559 * 239.22053 * 12 11 9 30 30 H 1.09004 * 109.47456 * 304.29716 * 14 13 12 31 31 H 1.09008 * 109.46655 * 64.29335 * 14 13 12 32 32 H 1.09000 * 109.47140 * 305.15087 * 15 14 13 33 33 H 1.08997 * 109.47087 * 65.15330 * 15 14 13 34 34 H 1.09002 * 117.49108 * 214.97329 * 18 16 15 35 35 H 1.08993 * 117.50277 * 359.97438 * 18 16 15 36 36 H 1.09007 * 115.54869 * 274.41859 * 21 19 16 37 37 H 1.08994 * 117.49558 * 359.97438 * 22 21 19 38 38 H 1.08997 * 117.49981 * 145.02014 * 22 21 19 39 39 H 1.08995 * 117.50154 * 214.98012 * 23 21 19 40 40 H 1.09007 * 117.49757 * 359.97438 * 23 21 19 41 41 H 1.09007 * 110.83404 * 202.57720 * 24 13 12 42 42 H 1.08996 * 110.58371 * 79.38406 * 24 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4967 2.0464 1.4001 5 1 3.5466 1.4403 -0.7001 6 1 1.4465 2.6528 -0.7000 7 6 2.0046 -1.1939 0.0056 8 1 3.0846 -1.1940 0.0052 9 6 1.2512 -2.4991 0.0124 10 1 0.6077 -2.5759 -0.8641 11 6 0.4263 -2.6479 1.3113 12 6 0.5692 -4.1282 1.7112 13 7 1.4018 -4.7787 0.6764 14 6 2.2461 -5.8280 1.2629 15 6 3.1674 -6.4031 0.1852 16 6 3.9546 -7.5811 0.7628 17 1 4.1545 -7.5333 1.8333 18 6 3.7111 -8.9618 0.1501 19 6 5.0215 -8.2220 -0.1270 20 1 5.9230 -8.5962 0.3579 21 6 5.2190 -7.6363 -1.5266 22 6 6.6438 -7.2648 -1.9424 23 6 5.6271 -6.1651 -1.6257 24 6 2.2309 -3.6974 0.0799 25 1 -0.4850 -0.8401 -0.0004 26 1 0.8311 -2.0042 2.0924 27 1 -0.6197 -2.4040 1.1253 28 1 1.0572 -4.2048 2.6828 29 1 -0.4133 -4.5984 1.7513 30 1 2.8477 -5.4035 2.0666 31 1 1.6144 -6.6216 1.6622 32 1 2.5693 -6.7451 -0.6595 33 1 3.8609 -5.6317 -0.1494 34 1 3.7508 -9.8226 0.8176 35 1 2.9899 -9.0310 -0.6641 36 1 4.5555 -8.0276 -2.2980 37 1 7.4403 -7.4372 -1.2186 38 1 6.9176 -7.4112 -2.9872 39 1 5.2325 -5.5886 -2.4623 40 1 5.7545 -5.6143 -0.6937 41 1 2.5694 -3.9744 -0.9186 42 1 3.0789 -3.4652 0.7241 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000714840457.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:53:10 Heat of formation + Delta-G solvation = 19.191368 kcal Electronic energy + Delta-G solvation = -18403.188831 eV Core-core repulsion = 15769.144116 eV Total energy + Delta-G solvation = -2634.044714 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 249.179 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.29314 -39.47333 -36.44776 -35.49724 -33.05635 -30.32342 -29.34201 -26.38096 -24.70652 -24.21853 -23.10216 -22.21401 -21.58555 -21.47048 -20.01532 -18.92659 -16.98177 -16.68013 -16.33329 -16.07747 -15.78532 -15.59967 -15.02684 -14.69898 -14.35724 -13.90639 -13.78561 -13.51272 -13.04125 -12.73062 -12.57185 -12.43561 -12.34566 -12.25708 -12.02056 -11.97173 -11.86553 -11.75343 -11.55040 -11.38595 -11.32657 -10.58846 -10.56730 -10.48592 -10.31022 -9.36536 -8.59579 -6.32509 1.52649 1.61207 1.78889 2.57045 2.68448 3.04624 3.10325 3.21204 3.64062 3.78476 3.95288 3.96614 4.05971 4.16142 4.19495 4.22135 4.30766 4.39488 4.44725 4.50929 4.59064 4.62895 4.71967 4.77735 4.81043 4.86611 4.97451 5.03139 5.04201 5.05051 5.11666 5.21302 5.26996 5.29038 5.33627 5.35953 5.45772 5.60689 5.81570 6.15202 6.19421 6.24801 6.65906 7.48567 8.79624 Molecular weight = 249.18amu Principal moments of inertia in cm(-1) A = 0.024930 B = 0.004959 C = 0.004285 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1122.861819 B = 5644.647123 C = 6532.568187 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.937 5.937 2 C -0.029 4.029 3 Si 1.115 2.885 4 H -0.275 1.275 5 H -0.272 1.272 6 H -0.283 1.283 7 C -0.608 4.608 8 H 0.045 0.955 9 C 0.023 3.977 10 H -0.003 1.003 11 C -0.113 4.113 12 C 0.047 3.953 13 N -0.529 5.529 14 C 0.052 3.948 15 C -0.077 4.077 16 C -0.150 4.150 17 H 0.107 0.893 18 C -0.162 4.162 19 C -0.120 4.120 20 H 0.114 0.886 21 C -0.125 4.125 22 C -0.166 4.166 23 C -0.189 4.189 24 C 0.069 3.931 25 H 0.262 0.738 26 H 0.038 0.962 27 H 0.039 0.961 28 H 0.045 0.955 29 H 0.081 0.919 30 H 0.027 0.973 31 H 0.083 0.917 32 H 0.060 0.940 33 H 0.061 0.939 34 H 0.108 0.892 35 H 0.092 0.908 36 H 0.102 0.898 37 H 0.101 0.899 38 H 0.102 0.898 39 H 0.086 0.914 40 H 0.085 0.915 41 H 0.066 0.934 42 H 0.029 0.971 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.288 -17.039 1.028 19.930 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.227 4.227 3 Si 0.937 3.063 4 H -0.200 1.200 5 H -0.197 1.197 6 H -0.209 1.209 7 C -0.647 4.647 8 H 0.063 0.937 9 C 0.003 3.997 10 H 0.015 0.985 11 C -0.152 4.152 12 C -0.081 4.081 13 N -0.253 5.253 14 C -0.076 4.076 15 C -0.114 4.114 16 C -0.169 4.169 17 H 0.125 0.875 18 C -0.199 4.199 19 C -0.138 4.138 20 H 0.132 0.868 21 C -0.143 4.143 22 C -0.203 4.203 23 C -0.226 4.226 24 C -0.058 4.058 25 H 0.072 0.928 26 H 0.057 0.943 27 H 0.058 0.942 28 H 0.064 0.936 29 H 0.099 0.901 30 H 0.045 0.955 31 H 0.101 0.899 32 H 0.079 0.921 33 H 0.080 0.920 34 H 0.127 0.873 35 H 0.110 0.890 36 H 0.120 0.880 37 H 0.119 0.881 38 H 0.121 0.879 39 H 0.105 0.895 40 H 0.104 0.896 41 H 0.084 0.916 42 H 0.047 0.953 Dipole moment (debyes) X Y Z Total from point charges 9.765 -15.684 0.641 18.487 hybrid contribution 0.287 -0.976 0.570 1.166 sum 10.051 -16.660 1.212 19.495 Atomic orbital electron populations 1.70866 1.07796 1.30518 1.48232 1.27195 0.96629 1.06180 0.92723 0.82956 0.74219 0.71503 0.77612 1.20037 1.19682 1.20897 1.22300 0.94049 0.92804 1.55504 0.93684 1.19699 0.93662 0.93691 0.92607 0.98517 1.22411 0.98994 0.94761 0.99022 1.22783 0.98385 0.93656 0.93301 1.64777 1.21065 1.10671 1.28779 1.22321 0.94873 0.94330 0.96057 1.21084 0.96573 0.96546 0.97236 1.22293 1.02137 0.93918 0.98518 0.87462 1.23174 0.98588 0.94919 1.03218 1.21870 0.93888 1.03498 0.94583 0.86798 1.21717 0.98845 0.97175 0.96541 1.23068 0.92144 1.02368 1.02743 1.22947 1.05025 0.91848 1.02787 1.22937 0.94526 0.90248 0.98093 0.92763 0.94329 0.94242 0.93643 0.90052 0.95493 0.89889 0.92127 0.92040 0.87332 0.88994 0.87972 0.88088 0.87950 0.89514 0.89627 0.91581 0.95300 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.62 13.45 21.45 0.29 -57.33 16 2 C -0.03 -1.65 5.34 84.65 0.45 -1.20 16 3 Si 1.11 50.71 29.90 68.60 2.05 52.76 16 4 H -0.27 -11.80 7.11 99.48 0.71 -11.09 16 5 H -0.27 -11.49 7.11 99.48 0.71 -10.78 16 6 H -0.28 -12.78 7.11 99.48 0.71 -12.07 16 7 C -0.61 -34.79 8.40 25.60 0.22 -34.58 16 8 H 0.04 2.54 7.78 -2.91 -0.02 2.52 16 9 C 0.02 1.18 2.57 -10.34 -0.03 1.15 16 10 H 0.00 -0.19 8.00 -2.38 -0.02 -0.21 16 11 C -0.11 -5.43 5.47 31.47 0.17 -5.26 16 12 C 0.05 1.79 6.70 86.45 0.58 2.37 16 13 N -0.53 -19.93 5.35 -882.47 -4.72 -24.65 16 14 C 0.05 1.55 4.80 86.30 0.41 1.97 16 15 C -0.08 -2.04 4.13 30.60 0.13 -1.91 16 16 C -0.15 -3.12 5.72 -10.79 -0.06 -3.18 16 17 H 0.11 2.10 8.07 -2.39 -0.02 2.08 16 18 C -0.16 -2.84 9.90 30.60 0.30 -2.54 16 19 C -0.12 -2.23 5.87 -10.79 -0.06 -2.29 16 20 H 0.11 1.85 8.14 -2.39 -0.02 1.83 16 21 C -0.12 -2.46 5.25 -10.79 -0.06 -2.52 16 22 C -0.17 -2.94 10.26 30.62 0.31 -2.63 16 23 C -0.19 -4.22 8.45 30.62 0.26 -3.96 16 24 C 0.07 3.01 4.79 86.61 0.41 3.43 16 25 H 0.26 16.22 5.67 -92.71 -0.53 15.69 16 26 H 0.04 1.97 7.84 -2.38 -0.02 1.95 16 27 H 0.04 1.95 7.08 -2.38 -0.02 1.93 16 28 H 0.05 1.60 7.67 -2.39 -0.02 1.59 16 29 H 0.08 2.84 8.14 -2.39 -0.02 2.82 16 30 H 0.03 0.81 7.97 -2.39 -0.02 0.80 16 31 H 0.08 2.21 8.14 -2.38 -0.02 2.19 16 32 H 0.06 1.71 7.88 -2.39 -0.02 1.69 16 33 H 0.06 1.79 4.68 -2.39 -0.01 1.78 16 34 H 0.11 1.53 8.14 -2.39 -0.02 1.51 16 35 H 0.09 1.69 8.03 -2.39 -0.02 1.67 16 36 H 0.10 2.02 8.14 -2.38 -0.02 2.00 16 37 H 0.10 1.60 8.14 -2.39 -0.02 1.58 16 38 H 0.10 1.59 8.14 -2.39 -0.02 1.57 16 39 H 0.09 2.05 8.14 -2.39 -0.02 2.03 16 40 H 0.09 2.09 7.31 -2.38 -0.02 2.08 16 41 H 0.07 2.80 7.79 -2.38 -0.02 2.78 16 42 H 0.03 1.27 7.92 -2.39 -0.02 1.25 16 Total: -1.00 -63.05 326.48 1.86 -61.19 By element: Atomic # 1 Polarization: 17.98 SS G_CDS: 1.20 Total: 19.18 kcal Atomic # 6 Polarization: -54.19 SS G_CDS: 3.04 Total: -51.15 kcal Atomic # 7 Polarization: -77.55 SS G_CDS: -4.43 Total: -81.98 kcal Atomic # 14 Polarization: 50.71 SS G_CDS: 2.05 Total: 52.76 kcal Total: -63.05 1.86 -61.19 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000714840457.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.380 kcal (2) G-P(sol) polarization free energy of solvation -63.054 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.327 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.864 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.189 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.191 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds