Wall clock time and date at job start Mon Mar 30 2020 06:53:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86800 * 120.00122 * 2 1 4 4 H 1.48503 * 109.47028 * 270.00354 * 3 2 1 5 5 H 1.48500 * 109.47014 * 30.00429 * 3 2 1 6 6 H 1.48497 * 109.47365 * 150.00559 * 3 2 1 7 7 C 1.37877 * 119.99862 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99959 * 179.97438 * 7 2 1 9 9 C 1.50700 * 120.00113 * 359.97438 * 7 2 1 10 10 H 1.09000 * 110.76850 * 298.25900 * 9 7 2 11 11 C 1.55147 * 110.70281 * 61.45364 * 9 7 2 12 12 C 1.54908 * 101.65049 * 154.03465 * 11 9 7 13 13 N 1.47845 * 104.79717 * 322.93105 * 12 11 9 14 14 C 1.46904 * 110.99935 * 146.36210 * 13 12 11 15 15 C 1.52999 * 109.47238 * 49.15818 * 14 13 12 16 16 C 1.52995 * 109.47261 * 179.97438 * 15 14 13 17 17 H 1.09007 * 115.55234 * 29.41870 * 16 15 14 18 18 C 1.52997 * 117.50257 * 243.74656 * 16 15 14 19 19 C 1.53005 * 117.49951 * 175.08545 * 16 15 14 20 20 H 1.08997 * 117.49499 * 0.02562 * 19 16 15 21 21 C 1.53003 * 117.49882 * 215.00324 * 19 16 15 22 22 C 1.52995 * 117.49607 * 128.62483 * 21 19 16 23 23 C 1.52998 * 117.49812 * 60.00257 * 21 19 16 24 24 C 1.47439 * 108.56650 * 24.09802 * 13 12 11 25 25 H 0.97005 * 119.99840 * 359.97438 * 1 2 3 26 26 H 1.08996 * 110.99290 * 272.12894 * 11 9 7 27 27 H 1.09002 * 110.98631 * 35.95138 * 11 9 7 28 28 H 1.09005 * 110.37447 * 81.76012 * 12 11 9 29 29 H 1.08998 * 110.37529 * 204.10029 * 12 11 9 30 30 H 1.09002 * 109.46981 * 169.16041 * 14 13 12 31 31 H 1.08999 * 109.47333 * 289.15770 * 14 13 12 32 32 H 1.09006 * 109.46937 * 300.00302 * 15 14 13 33 33 H 1.08999 * 109.46997 * 59.99747 * 15 14 13 34 34 H 1.09002 * 117.49604 * 0.02562 * 18 16 15 35 35 H 1.09000 * 117.50573 * 145.01727 * 18 16 15 36 36 H 1.09003 * 115.54701 * 274.32950 * 21 19 16 37 37 H 1.08999 * 117.50373 * 359.97438 * 22 21 19 38 38 H 1.09007 * 117.50180 * 145.02145 * 22 21 19 39 39 H 1.08998 * 117.49585 * 214.98128 * 23 21 19 40 40 H 1.08996 * 117.49728 * 359.97438 * 23 21 19 41 41 H 1.09003 * 109.88723 * 239.60536 * 24 13 12 42 42 H 1.08999 * 109.89041 * 118.41926 * 24 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4401 0.6999 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 1 0.6402 -2.5928 0.8974 11 6 0.3756 -2.6271 -1.2751 12 6 0.2661 -4.1649 -1.4263 13 7 1.5902 -4.6798 -1.0170 14 6 1.4653 -5.9838 -0.3521 15 6 0.5893 -6.9073 -1.2009 16 6 0.4598 -8.2656 -0.5087 17 1 0.5224 -8.2467 0.5794 18 6 1.0417 -9.4838 -1.2286 19 6 -0.4752 -9.2963 -1.1446 20 1 -0.9977 -9.0068 -2.0563 21 6 -1.2507 -10.2215 -0.2046 22 6 -2.7639 -10.3248 -0.4050 23 6 -2.2017 -9.5704 0.8015 24 6 2.2235 -3.6907 -0.1257 25 1 -0.4850 0.8401 0.0004 26 1 -0.6060 -2.1789 -1.1212 27 1 0.8745 -2.1846 -2.1373 28 1 -0.5123 -4.5562 -0.7711 29 1 0.0595 -4.4305 -2.4630 30 1 2.4539 -6.4277 -0.2344 31 1 1.0084 -5.8495 0.6283 32 1 -0.3993 -6.4633 -1.3185 33 1 1.0462 -7.0416 -2.1813 34 1 1.5172 -9.3174 -2.1952 35 1 1.4869 -10.2664 -0.6143 36 1 -0.7219 -11.1207 0.1117 37 1 -3.2072 -9.7334 -1.2061 38 1 -3.2312 -11.2922 -0.2205 39 1 -2.2990 -10.0414 1.7797 40 1 -2.2746 -8.4829 0.7941 41 1 3.1675 -3.3553 -0.5552 42 1 2.3964 -4.1329 0.8555 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000714850878.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:53:13 Heat of formation + Delta-G solvation = 36.521743 kcal Electronic energy + Delta-G solvation = -17971.493702 eV Core-core repulsion = 15338.200489 eV Total energy + Delta-G solvation = -2633.293213 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 249.179 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -39.02894 -37.99465 -35.70344 -33.33259 -31.34752 -28.39232 -28.13185 -24.46261 -23.72432 -22.82761 -22.55157 -20.81214 -19.92484 -19.49236 -19.34766 -16.47818 -15.93672 -15.32495 -15.13121 -14.77308 -14.46917 -13.94971 -13.64514 -13.06275 -12.74747 -12.38625 -12.01059 -11.87004 -11.77294 -11.53915 -11.22654 -11.07848 -11.01932 -10.97453 -10.71132 -10.64731 -10.53786 -10.47536 -10.15280 -9.85443 -9.60420 -9.45955 -9.19767 -8.81623 -8.37109 -7.51675 -6.00342 -4.03027 3.32078 3.38515 3.41902 3.43797 3.86245 4.35087 4.45211 4.64457 4.69622 4.81986 4.98073 4.99978 5.17989 5.28842 5.32726 5.39791 5.46968 5.56571 5.69455 5.73732 5.76331 5.88838 5.93370 5.95831 6.02418 6.09598 6.11681 6.15839 6.26451 6.36686 6.47338 6.48894 6.66169 6.91534 7.20744 7.24631 7.63061 7.69199 7.89048 7.94225 8.03296 8.44059 8.98289 9.60825 11.09364 Molecular weight = 249.18amu Principal moments of inertia in cm(-1) A = 0.043724 B = 0.003680 C = 0.003531 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 640.221722 B = 7607.791975 C = 7926.880668 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.062 3.938 3 Si 0.892 3.108 4 H -0.281 1.281 5 H -0.287 1.287 6 H -0.274 1.274 7 C -0.510 4.510 8 H 0.057 0.943 9 C 0.034 3.966 10 H 0.026 0.974 11 C -0.103 4.103 12 C 0.036 3.964 13 N -0.535 5.535 14 C 0.056 3.944 15 C -0.090 4.090 16 C -0.137 4.137 17 H 0.103 0.897 18 C -0.172 4.172 19 C -0.126 4.126 20 H 0.104 0.896 21 C -0.123 4.123 22 C -0.179 4.179 23 C -0.177 4.177 24 C 0.047 3.953 25 H 0.259 0.741 26 H 0.071 0.929 27 H 0.055 0.945 28 H 0.032 0.968 29 H 0.059 0.941 30 H 0.066 0.934 31 H 0.028 0.972 32 H 0.067 0.933 33 H 0.068 0.932 34 H 0.094 0.906 35 H 0.090 0.910 36 H 0.102 0.898 37 H 0.094 0.906 38 H 0.091 0.909 39 H 0.091 0.909 40 H 0.097 0.903 41 H 0.068 0.932 42 H 0.032 0.968 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.703 -18.502 -1.200 18.737 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.140 4.140 3 Si 0.720 3.280 4 H -0.207 1.207 5 H -0.213 1.213 6 H -0.199 1.199 7 C -0.549 4.549 8 H 0.075 0.925 9 C 0.015 3.985 10 H 0.044 0.956 11 C -0.141 4.141 12 C -0.091 4.091 13 N -0.259 5.259 14 C -0.072 4.072 15 C -0.127 4.127 16 C -0.155 4.155 17 H 0.121 0.879 18 C -0.208 4.208 19 C -0.144 4.144 20 H 0.122 0.878 21 C -0.141 4.141 22 C -0.215 4.215 23 C -0.214 4.214 24 C -0.080 4.080 25 H 0.069 0.931 26 H 0.089 0.911 27 H 0.074 0.926 28 H 0.050 0.950 29 H 0.077 0.923 30 H 0.085 0.915 31 H 0.046 0.954 32 H 0.086 0.914 33 H 0.087 0.913 34 H 0.113 0.887 35 H 0.109 0.891 36 H 0.120 0.880 37 H 0.112 0.888 38 H 0.110 0.890 39 H 0.110 0.890 40 H 0.116 0.884 41 H 0.087 0.913 42 H 0.050 0.950 Dipole moment (debyes) X Y Z Total from point charges -2.535 -18.456 -1.629 18.700 hybrid contribution -0.102 0.967 0.766 1.238 sum -2.637 -17.489 -0.862 17.708 Atomic orbital electron populations 1.69965 1.05915 1.26436 1.50592 1.24980 0.94859 0.99078 0.95058 0.86600 0.79855 0.83478 0.78099 1.20673 1.21325 1.19922 1.21085 0.92786 0.90235 1.50761 0.92483 1.19809 0.92567 0.92190 0.93952 0.95602 1.22604 1.01394 0.90273 0.99854 1.23140 0.89417 0.98009 0.98550 1.63687 1.20536 1.02218 1.39446 1.22205 0.99070 0.90788 0.95144 1.21287 1.00279 0.92273 0.98880 1.22430 1.03285 0.90653 0.99170 0.87907 1.23149 0.94943 1.00465 1.02290 1.21858 0.91681 1.00801 1.00045 0.87813 1.21742 0.91398 1.00112 1.00889 1.22970 0.95687 1.02016 1.00874 1.22976 1.04024 1.00310 0.94124 1.23003 0.99426 0.92754 0.92804 0.93101 0.91083 0.92579 0.94978 0.92264 0.91544 0.95405 0.91436 0.91286 0.88723 0.89115 0.87962 0.88758 0.89028 0.89022 0.88449 0.91323 0.94992 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.69 12.11 55.43 0.67 -25.02 16 2 C 0.06 1.73 5.33 -17.82 -0.10 1.63 16 3 Si 0.89 21.44 29.54 -169.99 -5.02 16.42 16 4 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 5 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 6 H -0.27 -6.50 7.11 56.52 0.40 -6.10 16 7 C -0.51 -14.17 8.50 -34.44 -0.29 -14.46 16 8 H 0.06 1.56 7.57 -52.48 -0.40 1.17 16 9 C 0.03 0.87 2.87 -89.95 -0.26 0.61 16 10 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16 11 C -0.10 -2.45 5.74 -24.59 -0.14 -2.59 16 12 C 0.04 0.72 5.30 -2.30 -0.01 0.71 16 13 N -0.53 -10.43 5.31 -231.25 -1.23 -11.66 16 14 C 0.06 0.91 4.78 -3.82 -0.02 0.89 16 15 C -0.09 -1.21 5.16 -26.73 -0.14 -1.35 16 16 C -0.14 -1.56 5.38 -90.62 -0.49 -2.05 16 17 H 0.10 1.21 8.08 -51.93 -0.42 0.79 16 18 C -0.17 -1.72 9.90 -26.69 -0.26 -1.98 16 19 C -0.13 -1.29 5.59 -90.58 -0.51 -1.80 16 20 H 0.10 1.08 8.14 -51.93 -0.42 0.66 16 21 C -0.12 -1.15 5.87 -90.62 -0.53 -1.69 16 22 C -0.18 -1.54 10.25 -26.73 -0.27 -1.82 16 23 C -0.18 -1.65 10.18 -26.73 -0.27 -1.93 16 24 C 0.05 1.03 6.46 -2.84 -0.02 1.01 16 25 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16 26 H 0.07 1.81 7.53 -51.93 -0.39 1.42 16 27 H 0.06 1.41 8.04 -51.93 -0.42 0.99 16 28 H 0.03 0.61 7.02 -51.93 -0.36 0.25 16 29 H 0.06 1.09 8.14 -51.93 -0.42 0.66 16 30 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 31 H 0.03 0.46 7.96 -51.93 -0.41 0.05 16 32 H 0.07 0.96 6.48 -51.93 -0.34 0.62 16 33 H 0.07 0.94 7.87 -51.93 -0.41 0.53 16 34 H 0.09 0.93 8.03 -51.93 -0.42 0.51 16 35 H 0.09 0.82 8.14 -51.93 -0.42 0.40 16 36 H 0.10 0.89 8.14 -51.93 -0.42 0.46 16 37 H 0.09 0.81 8.14 -51.93 -0.42 0.39 16 38 H 0.09 0.68 8.14 -51.93 -0.42 0.26 16 39 H 0.09 0.76 8.14 -51.93 -0.42 0.34 16 40 H 0.10 1.00 8.14 -51.93 -0.42 0.58 16 41 H 0.07 1.54 7.66 -51.93 -0.40 1.15 16 42 H 0.03 0.66 7.49 -51.93 -0.39 0.27 16 LS Contribution 333.05 15.07 5.02 5.02 Total: -1.00 -28.15 333.05 -11.58 -39.74 By element: Atomic # 1 Polarization: 8.04 SS G_CDS: -7.71 Total: 0.33 kcal Atomic # 6 Polarization: -21.51 SS G_CDS: -3.31 Total: -24.82 kcal Atomic # 7 Polarization: -36.13 SS G_CDS: -0.56 Total: -36.68 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -5.02 Total: 16.42 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -28.15 -11.58 -39.74 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000714850878.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.258 kcal (2) G-P(sol) polarization free energy of solvation -28.152 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.106 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.584 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.736 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.522 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds