Wall clock time and date at job start Mon Mar 30 2020 06:53:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86800 * 120.00122 * 2 1 4 4 H 1.48503 * 109.47028 * 270.00354 * 3 2 1 5 5 H 1.48500 * 109.47014 * 30.00429 * 3 2 1 6 6 H 1.48497 * 109.47365 * 150.00559 * 3 2 1 7 7 C 1.37877 * 119.99862 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99959 * 179.97438 * 7 2 1 9 9 C 1.50700 * 120.00113 * 359.97438 * 7 2 1 10 10 H 1.09000 * 110.76850 * 298.25900 * 9 7 2 11 11 C 1.55147 * 110.70281 * 61.45364 * 9 7 2 12 12 C 1.54908 * 101.65049 * 154.03465 * 11 9 7 13 13 N 1.47845 * 104.79717 * 322.93105 * 12 11 9 14 14 C 1.46904 * 110.99935 * 146.36210 * 13 12 11 15 15 C 1.52999 * 109.47238 * 49.15818 * 14 13 12 16 16 C 1.52995 * 109.47261 * 179.97438 * 15 14 13 17 17 H 1.09007 * 115.55234 * 29.41870 * 16 15 14 18 18 C 1.52997 * 117.50257 * 243.74656 * 16 15 14 19 19 C 1.53005 * 117.49951 * 175.08545 * 16 15 14 20 20 H 1.08997 * 117.49499 * 0.02562 * 19 16 15 21 21 C 1.53003 * 117.49882 * 215.00324 * 19 16 15 22 22 C 1.52995 * 117.49607 * 128.62483 * 21 19 16 23 23 C 1.52998 * 117.49812 * 60.00257 * 21 19 16 24 24 C 1.47439 * 108.56650 * 24.09802 * 13 12 11 25 25 H 0.97005 * 119.99840 * 359.97438 * 1 2 3 26 26 H 1.08996 * 110.99290 * 272.12894 * 11 9 7 27 27 H 1.09002 * 110.98631 * 35.95138 * 11 9 7 28 28 H 1.09005 * 110.37447 * 81.76012 * 12 11 9 29 29 H 1.08998 * 110.37529 * 204.10029 * 12 11 9 30 30 H 1.09002 * 109.46981 * 169.16041 * 14 13 12 31 31 H 1.08999 * 109.47333 * 289.15770 * 14 13 12 32 32 H 1.09006 * 109.46937 * 300.00302 * 15 14 13 33 33 H 1.08999 * 109.46997 * 59.99747 * 15 14 13 34 34 H 1.09002 * 117.49604 * 0.02562 * 18 16 15 35 35 H 1.09000 * 117.50573 * 145.01727 * 18 16 15 36 36 H 1.09003 * 115.54701 * 274.32950 * 21 19 16 37 37 H 1.08999 * 117.50373 * 359.97438 * 22 21 19 38 38 H 1.09007 * 117.50180 * 145.02145 * 22 21 19 39 39 H 1.08998 * 117.49585 * 214.98128 * 23 21 19 40 40 H 1.08996 * 117.49728 * 359.97438 * 23 21 19 41 41 H 1.09003 * 109.88723 * 239.60536 * 24 13 12 42 42 H 1.08999 * 109.89041 * 118.41926 * 24 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4401 0.6999 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 1 0.6402 -2.5928 0.8974 11 6 0.3756 -2.6271 -1.2751 12 6 0.2661 -4.1649 -1.4263 13 7 1.5902 -4.6798 -1.0170 14 6 1.4653 -5.9838 -0.3521 15 6 0.5893 -6.9073 -1.2009 16 6 0.4598 -8.2656 -0.5087 17 1 0.5224 -8.2467 0.5794 18 6 1.0417 -9.4838 -1.2286 19 6 -0.4752 -9.2963 -1.1446 20 1 -0.9977 -9.0068 -2.0563 21 6 -1.2507 -10.2215 -0.2046 22 6 -2.7639 -10.3248 -0.4050 23 6 -2.2017 -9.5704 0.8015 24 6 2.2235 -3.6907 -0.1257 25 1 -0.4850 0.8401 0.0004 26 1 -0.6060 -2.1789 -1.1212 27 1 0.8745 -2.1846 -2.1373 28 1 -0.5123 -4.5562 -0.7711 29 1 0.0595 -4.4305 -2.4630 30 1 2.4539 -6.4277 -0.2344 31 1 1.0084 -5.8495 0.6283 32 1 -0.3993 -6.4633 -1.3185 33 1 1.0462 -7.0416 -2.1813 34 1 1.5172 -9.3174 -2.1952 35 1 1.4869 -10.2664 -0.6143 36 1 -0.7219 -11.1207 0.1117 37 1 -3.2072 -9.7334 -1.2061 38 1 -3.2312 -11.2922 -0.2205 39 1 -2.2990 -10.0414 1.7797 40 1 -2.2746 -8.4829 0.7941 41 1 3.1675 -3.3553 -0.5552 42 1 2.3964 -4.1329 0.8555 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000714850878.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:53:12 Heat of formation + Delta-G solvation = 22.636946 kcal Electronic energy + Delta-G solvation = -17972.095792 eV Core-core repulsion = 15338.200489 eV Total energy + Delta-G solvation = -2633.895303 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 249.179 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.14903 -39.34151 -36.60544 -35.17228 -33.03391 -30.07519 -29.79792 -26.33402 -24.69176 -24.09638 -23.26591 -22.01741 -21.32517 -20.92168 -20.61465 -18.57295 -16.92411 -16.59508 -16.41528 -16.21942 -16.08085 -15.28820 -14.84034 -14.40882 -14.10802 -13.98033 -13.69434 -13.37986 -13.01422 -12.68481 -12.59768 -12.46833 -12.35910 -12.30877 -12.20955 -12.02355 -11.89781 -11.61997 -11.54974 -11.40767 -11.17689 -10.91079 -10.65588 -10.49613 -10.25479 -9.13055 -8.14471 -6.24742 1.41422 1.41871 1.52417 2.42464 2.66134 3.09299 3.16069 3.17572 3.65849 3.88937 3.94242 4.12473 4.14722 4.19436 4.24700 4.30512 4.39753 4.47729 4.54395 4.55163 4.61230 4.69987 4.79069 4.80772 4.91504 4.98377 4.99901 5.04864 5.08080 5.17148 5.27489 5.28825 5.29775 5.35097 5.37787 5.48412 5.57771 5.73223 5.87351 6.15829 6.31246 6.36647 6.83341 7.42740 8.94610 Molecular weight = 249.18amu Principal moments of inertia in cm(-1) A = 0.043724 B = 0.003680 C = 0.003531 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 640.221722 B = 7607.791975 C = 7926.880668 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.919 5.919 2 C 0.012 3.988 3 Si 0.958 3.042 4 H -0.275 1.275 5 H -0.283 1.283 6 H -0.267 1.267 7 C -0.532 4.532 8 H 0.055 0.945 9 C 0.025 3.975 10 H -0.004 1.004 11 C -0.096 4.096 12 C 0.051 3.949 13 N -0.536 5.536 14 C 0.057 3.943 15 C -0.079 4.079 16 C -0.148 4.148 17 H 0.099 0.901 18 C -0.161 4.161 19 C -0.122 4.122 20 H 0.102 0.898 21 C -0.127 4.127 22 C -0.174 4.174 23 C -0.186 4.186 24 C 0.058 3.942 25 H 0.261 0.739 26 H 0.047 0.953 27 H 0.038 0.962 28 H 0.038 0.962 29 H 0.080 0.920 30 H 0.078 0.922 31 H 0.021 0.979 32 H 0.059 0.941 33 H 0.071 0.929 34 H 0.098 0.902 35 H 0.103 0.897 36 H 0.113 0.887 37 H 0.092 0.908 38 H 0.106 0.894 39 H 0.101 0.899 40 H 0.083 0.917 41 H 0.062 0.938 42 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.167 -19.952 -1.580 20.132 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.558 5.558 2 C -0.187 4.187 3 Si 0.783 3.217 4 H -0.201 1.201 5 H -0.209 1.209 6 H -0.192 1.192 7 C -0.570 4.570 8 H 0.074 0.926 9 C 0.006 3.994 10 H 0.014 0.986 11 C -0.135 4.135 12 C -0.077 4.077 13 N -0.260 5.260 14 C -0.071 4.071 15 C -0.117 4.117 16 C -0.166 4.166 17 H 0.117 0.883 18 C -0.197 4.197 19 C -0.140 4.140 20 H 0.120 0.880 21 C -0.145 4.145 22 C -0.210 4.210 23 C -0.223 4.223 24 C -0.070 4.070 25 H 0.070 0.930 26 H 0.066 0.934 27 H 0.057 0.943 28 H 0.057 0.943 29 H 0.098 0.902 30 H 0.096 0.904 31 H 0.040 0.960 32 H 0.077 0.923 33 H 0.089 0.911 34 H 0.117 0.883 35 H 0.121 0.879 36 H 0.131 0.869 37 H 0.110 0.890 38 H 0.125 0.875 39 H 0.119 0.881 40 H 0.101 0.899 41 H 0.080 0.920 42 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -1.995 -19.924 -2.010 20.124 hybrid contribution -0.291 1.398 0.905 1.690 sum -2.285 -18.526 -1.105 18.699 Atomic orbital electron populations 1.70089 1.07277 1.27288 1.51149 1.25785 0.95726 1.02547 0.94629 0.85560 0.78721 0.79126 0.78285 1.20072 1.20891 1.19155 1.21432 0.92976 0.91627 1.50949 0.92645 1.19791 0.93218 0.93166 0.93252 0.98621 1.22392 0.99495 0.93266 0.98360 1.23010 0.89918 0.94728 1.00008 1.63696 1.20086 1.02946 1.39304 1.22301 1.00359 0.89391 0.95060 1.21150 0.99076 0.92796 0.98629 1.22279 1.05365 0.90098 0.98904 0.88252 1.23221 0.94721 0.99506 1.02300 1.21889 0.92096 1.00167 0.99884 0.88029 1.21798 0.91782 1.00234 1.00706 1.23050 0.95244 1.02514 1.00239 1.22987 1.04653 0.99659 0.94952 1.22777 0.98287 0.92109 0.93777 0.93031 0.93397 0.94289 0.94325 0.90166 0.90367 0.96049 0.92286 0.91059 0.88310 0.87883 0.86935 0.88964 0.87546 0.88075 0.89865 0.91990 0.94037 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -54.07 12.11 21.45 0.26 -53.81 16 2 C 0.01 0.68 5.33 84.66 0.45 1.13 16 3 Si 0.96 44.21 29.54 68.60 2.03 46.23 16 4 H -0.28 -12.39 7.11 99.48 0.71 -11.68 16 5 H -0.28 -12.81 7.11 99.48 0.71 -12.10 16 6 H -0.27 -11.92 7.11 99.48 0.71 -11.22 16 7 C -0.53 -30.03 8.50 25.60 0.22 -29.81 16 8 H 0.06 3.07 7.57 -2.91 -0.02 3.05 16 9 C 0.02 1.30 2.87 -10.36 -0.03 1.27 16 10 H 0.00 -0.25 8.14 -2.39 -0.02 -0.27 16 11 C -0.10 -4.71 5.74 31.98 0.18 -4.53 16 12 C 0.05 1.98 5.30 86.77 0.46 2.44 16 13 N -0.54 -20.40 5.31 -885.54 -4.71 -25.11 16 14 C 0.06 1.75 4.78 86.30 0.41 2.16 16 15 C -0.08 -2.00 5.16 30.59 0.16 -1.85 16 16 C -0.15 -3.12 5.38 -10.79 -0.06 -3.18 16 17 H 0.10 2.19 8.08 -2.38 -0.02 2.17 16 18 C -0.16 -2.81 9.90 30.62 0.30 -2.51 16 19 C -0.12 -2.27 5.59 -10.77 -0.06 -2.33 16 20 H 0.10 1.94 8.14 -2.39 -0.02 1.92 16 21 C -0.13 -2.12 5.87 -10.79 -0.06 -2.18 16 22 C -0.17 -2.67 10.25 30.59 0.31 -2.36 16 23 C -0.19 -3.21 10.18 30.59 0.31 -2.90 16 24 C 0.06 2.54 6.46 86.65 0.56 3.10 16 25 H 0.26 14.57 8.31 -92.70 -0.77 13.80 16 26 H 0.05 2.52 7.53 -2.39 -0.02 2.50 16 27 H 0.04 1.99 8.04 -2.39 -0.02 1.97 16 28 H 0.04 1.46 7.02 -2.38 -0.02 1.44 16 29 H 0.08 2.82 8.14 -2.39 -0.02 2.80 16 30 H 0.08 2.24 8.14 -2.39 -0.02 2.22 16 31 H 0.02 0.69 7.96 -2.39 -0.02 0.67 16 32 H 0.06 1.59 6.48 -2.38 -0.02 1.58 16 33 H 0.07 1.79 7.87 -2.39 -0.02 1.77 16 34 H 0.10 1.67 8.03 -2.39 -0.02 1.65 16 35 H 0.10 1.56 8.14 -2.39 -0.02 1.54 16 36 H 0.11 1.65 8.14 -2.39 -0.02 1.63 16 37 H 0.09 1.45 8.14 -2.39 -0.02 1.43 16 38 H 0.11 1.32 8.14 -2.38 -0.02 1.30 16 39 H 0.10 1.53 8.14 -2.39 -0.02 1.51 16 40 H 0.08 1.67 8.14 -2.39 -0.02 1.65 16 41 H 0.06 2.78 7.66 -2.39 -0.02 2.76 16 42 H 0.04 1.70 7.49 -2.39 -0.02 1.69 16 Total: -1.00 -60.14 333.05 1.69 -58.45 By element: Atomic # 1 Polarization: 14.82 SS G_CDS: 0.95 Total: 15.77 kcal Atomic # 6 Polarization: -44.69 SS G_CDS: 3.16 Total: -41.53 kcal Atomic # 7 Polarization: -74.48 SS G_CDS: -4.45 Total: -78.92 kcal Atomic # 14 Polarization: 44.21 SS G_CDS: 2.03 Total: 46.23 kcal Total: -60.14 1.69 -58.45 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000714850878.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.089 kcal (2) G-P(sol) polarization free energy of solvation -60.144 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.945 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.692 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.452 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.637 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds