Wall clock time and date at job start Mon Mar 30 2020 06:49:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86806 * 119.99976 * 2 1 4 4 H 1.48493 * 109.47347 * 240.00376 * 3 2 1 5 5 H 1.48506 * 109.46987 * 0.02562 * 3 2 1 6 6 H 1.48502 * 109.47073 * 120.00305 * 3 2 1 7 7 C 1.37873 * 120.00141 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00153 * 173.06304 * 7 2 1 9 9 C 1.50700 * 120.00147 * 353.06024 * 7 2 1 10 10 C 1.53001 * 115.54790 * 84.96916 * 9 7 2 11 11 N 1.46906 * 109.47351 * 65.16709 * 10 9 7 12 12 C 1.46899 * 111.00226 * 174.69941 * 11 10 9 13 13 C 1.52995 * 109.46918 * 180.02562 * 12 11 10 14 14 C 1.53000 * 109.46835 * 180.02562 * 13 12 11 15 15 H 1.09001 * 110.43906 * 56.09344 * 14 13 12 16 16 C 1.54897 * 110.48775 * 293.54575 * 14 13 12 17 17 C 1.54886 * 102.75119 * 203.37882 * 16 14 13 18 18 C 1.54272 * 104.19440 * 37.94616 * 17 16 14 19 19 H 1.08996 * 117.41463 * 116.37143 * 18 17 16 20 20 C 1.53005 * 118.19585 * 270.99780 * 18 17 16 21 21 C 1.53881 * 106.59865 * 336.38815 * 18 17 16 22 22 H 1.08996 * 121.32995 * 138.06746 * 21 18 17 23 23 C 1.53002 * 117.50173 * 230.63855 * 9 7 2 24 24 C 1.52999 * 117.50024 * 299.30226 * 9 7 2 25 25 H 0.96996 * 120.00571 * 5.03815 * 1 2 3 26 26 H 1.09002 * 109.46953 * 305.17332 * 10 9 7 27 27 H 1.09001 * 109.47617 * 185.16703 * 10 9 7 28 28 H 1.00900 * 110.99823 * 298.66151 * 11 10 9 29 29 H 1.09002 * 109.47035 * 300.00641 * 12 11 10 30 30 H 1.09001 * 109.46653 * 60.00762 * 12 11 10 31 31 H 1.09002 * 109.47768 * 300.00165 * 13 12 11 32 32 H 1.09004 * 109.47352 * 60.00883 * 13 12 11 33 33 H 1.09001 * 110.75401 * 321.69778 * 16 14 13 34 34 H 1.08997 * 110.75263 * 84.88423 * 16 14 13 35 35 H 1.08995 * 110.48704 * 156.61667 * 17 16 14 36 36 H 1.08994 * 110.48770 * 279.27157 * 17 16 14 37 37 H 1.09004 * 117.45655 * 201.21344 * 20 18 17 38 38 H 1.08996 * 117.46296 * 346.02129 * 20 18 17 39 39 H 1.08999 * 117.49479 * 215.00339 * 23 9 7 40 40 H 1.09000 * 117.49740 * 0.02562 * 23 9 7 41 41 H 1.09000 * 117.49870 * 359.97012 * 24 9 7 42 42 H 1.08995 * 117.49665 * 144.97204 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6965 -1.2125 5 1 1.2840 2.7465 0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0785 -1.1974 -0.1135 9 6 1.2593 -2.4944 0.1566 10 6 0.6847 -3.0855 -1.1324 11 7 1.7840 -3.4607 -2.0317 12 6 1.2756 -4.1471 -3.2269 13 6 2.4471 -4.5217 -4.1368 14 6 1.9175 -5.2360 -5.3819 15 1 1.1828 -4.6144 -5.8938 16 6 1.2987 -6.6038 -5.0003 17 6 1.3902 -7.4018 -6.3246 18 6 2.7430 -6.9748 -6.9309 19 1 3.5066 -7.7440 -7.0459 20 6 2.7699 -5.7502 -7.8477 21 6 3.0782 -5.5977 -6.3315 22 1 4.0888 -5.3526 -6.0050 23 6 1.7624 -3.4730 1.2196 24 6 0.4607 -2.6998 1.4453 25 1 -0.4851 0.8367 -0.0738 26 1 0.0521 -2.3447 -1.6213 27 1 0.0924 -3.9691 -0.8945 28 1 2.3354 -2.6544 -2.2847 29 1 0.7442 -5.0508 -2.9284 30 1 0.5952 -3.4859 -3.7636 31 1 2.9789 -3.6183 -4.4353 32 1 3.1272 -5.1831 -3.5999 33 1 1.8828 -7.0869 -4.2169 34 1 0.2611 -6.4848 -4.6886 35 1 1.3828 -8.4734 -6.1255 36 1 0.5711 -7.1308 -6.9906 37 1 3.6083 -5.6575 -8.5381 38 1 1.8144 -5.3773 -8.2166 39 1 1.6840 -4.5379 1.0007 40 1 2.6322 -3.1761 1.8057 41 1 0.4747 -1.8946 2.1798 42 1 -0.4742 -3.2557 1.3748 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000717048108.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:49:16 Heat of formation + Delta-G solvation = 29.989789 kcal Electronic energy + Delta-G solvation = -18042.756558 eV Core-core repulsion = 15409.180098 eV Total energy + Delta-G solvation = -2633.576460 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 249.179 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -39.60442 -36.96131 -35.00935 -32.20764 -31.85327 -30.31597 -26.78586 -25.37698 -23.60275 -22.93429 -21.26610 -20.85218 -20.18156 -19.47207 -18.93576 -16.02166 -15.77310 -15.47213 -14.72189 -14.54924 -14.02417 -13.88884 -13.50110 -13.05925 -12.98703 -12.71997 -12.36630 -11.84508 -11.49865 -11.27255 -11.25367 -10.98931 -10.92407 -10.83063 -10.81585 -10.52515 -10.41692 -10.27332 -10.10681 -10.03108 -9.67780 -9.34321 -8.71000 -8.38356 -8.01232 -7.41476 -5.99117 -4.05106 3.31410 3.36703 3.39672 3.51735 4.31842 4.42421 4.59636 4.68912 4.98419 5.10546 5.16074 5.28812 5.31284 5.37425 5.43992 5.50976 5.60240 5.65898 5.69419 5.81050 5.86466 5.99564 6.03184 6.06551 6.13027 6.21182 6.23667 6.32522 6.48408 6.54061 6.59603 6.64696 6.90367 6.90677 6.98263 7.21841 7.57737 7.61628 7.91419 8.07989 8.36608 8.54553 8.97989 9.60246 11.08850 Molecular weight = 249.18amu Principal moments of inertia in cm(-1) A = 0.028567 B = 0.004259 C = 0.003909 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 979.904929 B = 6573.227747 C = 7160.810853 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.881 5.881 2 C 0.070 3.930 3 Si 0.888 3.112 4 H -0.277 1.277 5 H -0.289 1.289 6 H -0.277 1.277 7 C -0.493 4.493 8 H 0.059 0.941 9 C 0.051 3.949 10 C 0.106 3.894 11 N -0.683 5.683 12 C 0.059 3.941 13 C -0.106 4.106 14 C -0.061 4.061 15 H 0.072 0.928 16 C -0.118 4.118 17 C -0.097 4.097 18 C -0.168 4.168 19 H 0.104 0.896 20 C -0.159 4.159 21 C -0.157 4.157 22 H 0.111 0.889 23 C -0.200 4.200 24 C -0.163 4.163 25 H 0.259 0.741 26 H 0.034 0.966 27 H 0.035 0.965 28 H 0.346 0.654 29 H 0.061 0.939 30 H 0.018 0.982 31 H 0.060 0.940 32 H 0.069 0.931 33 H 0.071 0.929 34 H 0.068 0.932 35 H 0.066 0.934 36 H 0.064 0.936 37 H 0.094 0.906 38 H 0.091 0.909 39 H 0.064 0.936 40 H 0.072 0.928 41 H 0.078 0.922 42 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.596 -11.467 -12.357 17.056 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.518 5.518 2 C -0.133 4.133 3 Si 0.715 3.285 4 H -0.203 1.203 5 H -0.214 1.214 6 H -0.202 1.202 7 C -0.531 4.531 8 H 0.077 0.923 9 C 0.050 3.950 10 C -0.023 4.023 11 N -0.314 5.314 12 C -0.071 4.071 13 C -0.143 4.143 14 C -0.080 4.080 15 H 0.090 0.910 16 C -0.156 4.156 17 C -0.134 4.134 18 C -0.186 4.186 19 H 0.122 0.878 20 C -0.196 4.196 21 C -0.175 4.175 22 H 0.129 0.871 23 C -0.238 4.238 24 C -0.201 4.201 25 H 0.069 0.931 26 H 0.052 0.948 27 H 0.054 0.946 28 H 0.164 0.836 29 H 0.080 0.920 30 H 0.036 0.964 31 H 0.079 0.921 32 H 0.088 0.912 33 H 0.090 0.910 34 H 0.086 0.914 35 H 0.085 0.915 36 H 0.083 0.917 37 H 0.112 0.888 38 H 0.109 0.891 39 H 0.083 0.917 40 H 0.091 0.909 41 H 0.096 0.904 42 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 2.553 -11.921 -11.935 17.061 hybrid contribution 0.018 1.690 -0.497 1.761 sum 2.570 -10.231 -12.433 16.305 Atomic orbital electron populations 1.69980 1.05872 1.26654 1.49275 1.24999 0.94765 0.98784 0.94722 0.86740 0.79669 0.83357 0.78692 1.20289 1.21432 1.20225 1.20436 0.93085 0.88877 1.50723 0.92256 1.18732 0.97268 0.93300 0.85674 1.21416 0.91063 0.95808 0.93982 1.60441 1.24045 1.32237 1.14678 1.21911 0.95633 0.98257 0.91265 1.21539 0.98315 1.00183 0.94311 1.21566 0.95364 0.96162 0.94882 0.90976 1.22765 1.00940 0.94838 0.97012 1.21966 0.95197 0.99781 0.96505 1.23249 0.99423 0.91597 1.04358 0.87786 1.23414 1.02692 1.01142 0.92348 1.23712 0.99870 1.00778 0.93183 0.87141 1.22864 0.97571 0.95847 1.07487 1.22533 0.92450 1.01347 1.03811 0.93093 0.94787 0.94627 0.83587 0.92023 0.96418 0.92116 0.91191 0.90994 0.91352 0.91502 0.91720 0.88760 0.89091 0.91727 0.90949 0.90378 0.92233 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -24.95 12.95 55.43 0.72 -24.23 16 2 C 0.07 1.91 5.39 -17.82 -0.10 1.82 16 3 Si 0.89 21.05 29.55 -169.99 -5.02 16.03 16 4 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 5 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 6 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 7 C -0.49 -13.34 8.32 -34.44 -0.29 -13.63 16 8 H 0.06 1.61 7.82 -52.49 -0.41 1.20 16 9 C 0.05 1.27 1.56 -155.66 -0.24 1.03 16 10 C 0.11 2.43 5.54 -3.82 -0.02 2.41 16 11 N -0.68 -13.66 6.47 -113.78 -0.74 -14.40 16 12 C 0.06 0.97 5.52 -3.83 -0.02 0.95 16 13 C -0.11 -1.44 4.95 -26.73 -0.13 -1.57 16 14 C -0.06 -0.71 2.71 -88.95 -0.24 -0.95 16 15 H 0.07 0.87 8.14 -51.93 -0.42 0.44 16 16 C -0.12 -1.28 5.51 -24.74 -0.14 -1.41 16 17 C -0.10 -0.92 6.62 -25.07 -0.17 -1.09 16 18 C -0.17 -1.62 6.85 -89.49 -0.61 -2.23 16 19 H 0.10 0.92 8.14 -51.93 -0.42 0.50 16 20 C -0.16 -1.49 10.21 -25.42 -0.26 -1.75 16 21 C -0.16 -1.68 6.46 -88.18 -0.57 -2.25 16 22 H 0.11 1.18 8.05 -51.93 -0.42 0.76 16 23 C -0.20 -4.58 9.96 -26.69 -0.27 -4.85 16 24 C -0.16 -3.96 9.46 -26.69 -0.25 -4.21 16 25 H 0.26 7.07 8.32 -40.82 -0.34 6.73 16 26 H 0.03 0.86 8.14 -51.93 -0.42 0.43 16 27 H 0.04 0.78 8.08 -51.93 -0.42 0.36 16 28 H 0.35 7.23 8.30 -39.29 -0.33 6.91 16 29 H 0.06 0.98 7.38 -51.93 -0.38 0.60 16 30 H 0.02 0.30 8.14 -51.93 -0.42 -0.12 16 31 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 32 H 0.07 0.98 8.10 -51.93 -0.42 0.56 16 33 H 0.07 0.81 8.02 -51.93 -0.42 0.39 16 34 H 0.07 0.73 8.00 -51.93 -0.42 0.32 16 35 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 36 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 37 H 0.09 0.77 8.14 -51.93 -0.42 0.35 16 38 H 0.09 0.84 8.14 -51.93 -0.42 0.41 16 39 H 0.06 1.37 8.14 -51.93 -0.42 0.95 16 40 H 0.07 1.64 8.14 -51.93 -0.42 1.22 16 41 H 0.08 2.01 8.14 -51.93 -0.42 1.59 16 42 H 0.06 1.36 8.14 -51.93 -0.42 0.94 16 LS Contribution 337.27 15.07 5.08 5.08 Total: -1.00 -27.54 337.27 -11.10 -38.64 By element: Atomic # 1 Polarization: 14.45 SS G_CDS: -7.84 Total: 6.61 kcal Atomic # 6 Polarization: -24.44 SS G_CDS: -3.30 Total: -27.74 kcal Atomic # 7 Polarization: -38.61 SS G_CDS: -0.02 Total: -38.63 kcal Atomic # 14 Polarization: 21.05 SS G_CDS: -5.02 Total: 16.03 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -27.54 -11.10 -38.64 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000717048108.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.634 kcal (2) G-P(sol) polarization free energy of solvation -27.540 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.093 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.104 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.644 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.990 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds