Wall clock time and date at job start Mon Mar 30 2020 06:28:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86801 * 119.99839 * 2 1 4 4 H 1.48497 * 109.47447 * 239.99982 * 3 2 1 5 5 H 1.48505 * 109.47180 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.47047 * 119.99800 * 3 2 1 7 7 C 1.37876 * 120.00082 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99693 * 184.52508 * 7 2 1 9 9 C 1.50698 * 120.00176 * 4.51739 * 7 2 1 10 10 C 1.52993 * 115.55159 * 275.28775 * 9 7 2 11 11 N 1.46906 * 109.46994 * 302.01549 * 10 9 7 12 12 C 1.46899 * 111.00404 * 182.35505 * 11 10 9 13 13 H 1.08999 * 110.44950 * 36.93686 * 12 11 10 14 14 C 1.56019 * 110.61820 * 274.27772 * 12 11 10 15 15 C 1.56242 * 105.82355 * 247.87039 * 14 12 11 16 16 C 1.51732 * 101.95428 * 25.25310 * 15 14 12 17 17 H 1.09007 * 110.89134 * 71.57469 * 16 15 14 18 18 C 1.51724 * 122.53426 * 205.70421 * 16 15 14 19 19 C 1.56249 * 101.92610 * 153.04131 * 18 16 15 20 20 C 1.55924 * 105.86395 * 334.75291 * 19 18 16 21 21 C 1.49968 * 110.50876 * 159.54119 * 12 11 10 22 22 H 1.09006 * 107.81105 * 197.30130 * 21 12 11 23 23 C 1.53005 * 117.49681 * 60.95193 * 9 7 2 24 24 C 1.52996 * 117.49812 * 129.60902 * 9 7 2 25 25 H 0.97000 * 119.99991 * 5.01203 * 1 2 3 26 26 H 1.09004 * 109.47492 * 182.02274 * 10 9 7 27 27 H 1.09000 * 109.47786 * 62.01708 * 10 9 7 28 28 H 1.00900 * 111.00065 * 306.31770 * 11 10 9 29 29 H 1.09003 * 110.20473 * 128.77548 * 14 12 11 30 30 H 1.09000 * 110.18615 * 6.95368 * 14 12 11 31 31 H 1.08998 * 110.94244 * 267.08070 * 15 14 12 32 32 H 1.08999 * 110.94362 * 143.43038 * 15 14 12 33 33 H 1.09003 * 110.93608 * 271.19533 * 18 16 15 34 34 H 1.09003 * 110.94120 * 34.84592 * 18 16 15 35 35 H 1.08998 * 110.17271 * 93.84322 * 19 18 16 36 36 H 1.08992 * 110.17684 * 215.57876 * 19 18 16 37 37 H 1.08993 * 110.50412 * 112.07406 * 20 19 18 38 38 H 1.09005 * 110.50355 * 234.76873 * 20 19 18 39 39 H 1.09002 * 117.50018 * 215.00403 * 23 9 7 40 40 H 1.09006 * 117.49664 * 0.02741 * 23 9 7 41 41 H 1.09004 * 117.49995 * 359.97438 * 24 9 7 42 42 H 1.08998 * 117.49768 * 144.97527 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.1029 1.6965 -1.2124 5 1 1.2841 2.7465 0.0006 6 1 3.1029 1.6965 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0821 -1.1955 0.0733 9 6 1.2547 -2.4971 -0.1039 10 6 0.7226 -3.0587 1.2160 11 7 1.8390 -3.2535 2.1508 12 6 1.3726 -3.8450 3.4119 13 1 0.5813 -4.5703 3.2227 14 6 0.8741 -2.7348 4.3883 15 6 1.8978 -2.7143 5.5685 16 6 3.1472 -3.2695 4.9104 17 1 3.5752 -2.5460 4.2164 18 6 4.2366 -3.9771 5.6944 19 6 4.8536 -4.9194 4.6113 20 6 3.7244 -5.1613 3.5636 21 6 2.5124 -4.4894 4.1432 22 1 2.0914 -5.1654 4.8875 23 6 0.4143 -2.7307 -1.3610 24 6 1.7226 -3.4995 -1.1608 25 1 -0.4850 0.8368 -0.0734 26 1 0.2315 -4.0144 1.0326 27 1 0.0063 -2.3588 1.6463 28 1 2.5654 -3.8163 1.7342 29 1 -0.1217 -2.9785 4.7586 30 1 0.8622 -1.7684 3.8843 31 1 1.5669 -3.3593 6.3824 32 1 2.0634 -1.6970 5.9230 33 1 4.9776 -3.2664 6.0601 34 1 3.8129 -4.5532 6.5170 35 1 5.7090 -4.4379 4.1375 36 1 5.1570 -5.8636 5.0633 37 1 3.9772 -4.6895 2.6141 38 1 3.5528 -6.2290 3.4268 39 1 -0.5177 -3.2845 -1.2476 40 1 0.4042 -1.9420 -2.1133 41 1 2.5727 -3.2164 -1.7816 42 1 1.6519 -4.5592 -0.9155 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000722073329.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:28:10 Heat of formation + Delta-G solvation = 15.793669 kcal Electronic energy + Delta-G solvation = -19146.204458 eV Core-core repulsion = 16512.012408 eV Total energy + Delta-G solvation = -2634.192050 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 249.179 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -39.93443 -36.79892 -34.48632 -32.39457 -31.74190 -29.15566 -26.43094 -25.85572 -25.06472 -23.52383 -21.02650 -20.54335 -19.80884 -19.00535 -18.47650 -16.28545 -15.39410 -15.04965 -14.81077 -14.44708 -14.26259 -13.92720 -13.20871 -12.96276 -12.65196 -12.43764 -12.01531 -11.80325 -11.32588 -11.11371 -10.97347 -10.92079 -10.86552 -10.67757 -10.52079 -10.40446 -10.23561 -10.13799 -10.13486 -10.04707 -9.67379 -9.29683 -8.74899 -8.28451 -7.99097 -7.38791 -5.88260 -3.90510 3.40217 3.44102 3.47619 4.34727 4.53245 4.83454 4.87944 4.98645 5.31671 5.33979 5.41257 5.44354 5.47096 5.56528 5.72099 5.82628 5.85044 5.89827 5.95204 6.00544 6.08263 6.17006 6.23803 6.26502 6.37763 6.40681 6.51529 6.54923 6.59005 6.60509 6.70442 6.71569 6.78725 6.91658 7.04419 7.17950 7.53232 7.64307 8.03270 8.12527 8.33755 8.62055 9.07460 9.72534 11.21408 Molecular weight = 249.18amu Principal moments of inertia in cm(-1) A = 0.021038 B = 0.006954 C = 0.006272 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1330.590965 B = 4025.760991 C = 4462.895397 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.886 5.886 2 C 0.069 3.931 3 Si 0.886 3.114 4 H -0.280 1.280 5 H -0.290 1.290 6 H -0.277 1.277 7 C -0.465 4.465 8 H 0.057 0.943 9 C 0.050 3.950 10 C 0.108 3.892 11 N -0.656 5.656 12 C 0.102 3.898 13 H 0.031 0.969 14 C -0.113 4.113 15 C -0.107 4.107 16 C -0.103 4.103 17 H 0.091 0.909 18 C -0.112 4.112 19 C -0.118 4.118 20 C -0.109 4.109 21 C -0.110 4.110 22 H 0.056 0.944 23 C -0.158 4.158 24 C -0.218 4.218 25 H 0.257 0.743 26 H -0.009 1.009 27 H 0.074 0.926 28 H 0.331 0.669 29 H 0.053 0.947 30 H 0.085 0.915 31 H 0.056 0.944 32 H 0.060 0.940 33 H 0.061 0.939 34 H 0.060 0.940 35 H 0.064 0.936 36 H 0.057 0.943 37 H 0.071 0.929 38 H 0.058 0.942 39 H 0.059 0.941 40 H 0.081 0.919 41 H 0.076 0.924 42 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.654 -8.747 9.379 13.643 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.524 5.524 2 C -0.132 4.132 3 Si 0.714 3.286 4 H -0.206 1.206 5 H -0.216 1.216 6 H -0.202 1.202 7 C -0.503 4.503 8 H 0.075 0.925 9 C 0.050 3.950 10 C -0.021 4.021 11 N -0.288 5.288 12 C -0.009 4.009 13 H 0.049 0.951 14 C -0.151 4.151 15 C -0.144 4.144 16 C -0.121 4.121 17 H 0.109 0.891 18 C -0.149 4.149 19 C -0.156 4.156 20 C -0.147 4.147 21 C -0.129 4.129 22 H 0.074 0.926 23 C -0.196 4.196 24 C -0.256 4.256 25 H 0.066 0.934 26 H 0.009 0.991 27 H 0.093 0.907 28 H 0.150 0.850 29 H 0.071 0.929 30 H 0.103 0.897 31 H 0.075 0.925 32 H 0.079 0.921 33 H 0.080 0.920 34 H 0.079 0.921 35 H 0.083 0.917 36 H 0.076 0.924 37 H 0.089 0.911 38 H 0.076 0.924 39 H 0.078 0.922 40 H 0.099 0.901 41 H 0.094 0.906 42 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 4.458 -7.974 9.691 13.318 hybrid contribution 0.093 -0.037 -0.388 0.400 sum 4.551 -8.011 9.303 13.093 Atomic orbital electron populations 1.70002 1.05737 1.26417 1.50264 1.24890 0.94714 0.98540 0.95106 0.86770 0.79651 0.83682 0.78490 1.20625 1.21608 1.20229 1.20239 0.92332 0.88387 1.49338 0.92486 1.18872 0.97166 0.93542 0.85464 1.21551 0.91863 0.95499 0.93156 1.60354 1.12352 1.52173 1.03919 1.21362 0.94334 0.93654 0.91545 0.95075 1.23017 0.96790 1.00656 0.94625 1.21884 0.95259 1.00234 0.97035 1.22341 0.94452 0.97307 0.98045 0.89062 1.21943 0.97864 0.97963 0.97154 1.22849 0.97944 0.98851 0.95918 1.21434 0.94582 0.99353 0.99293 1.21693 0.95242 0.96940 0.99013 0.92551 1.22493 0.91722 1.01251 1.04134 1.23025 0.98824 0.95441 1.08290 0.93361 0.99148 0.90727 0.84994 0.92868 0.89677 0.92514 0.92089 0.92020 0.92078 0.91704 0.92369 0.91061 0.92357 0.92232 0.90085 0.90583 0.92269 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.34 12.89 55.43 0.71 -24.63 16 2 C 0.07 1.91 5.40 -17.82 -0.10 1.81 16 3 Si 0.89 21.60 29.54 -169.99 -5.02 16.58 16 4 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 5 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 6 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 7 C -0.46 -12.66 8.59 -34.44 -0.30 -12.95 16 8 H 0.06 1.57 7.82 -52.48 -0.41 1.16 16 9 C 0.05 1.23 1.53 -155.66 -0.24 0.99 16 10 C 0.11 2.43 5.42 -3.82 -0.02 2.41 16 11 N -0.66 -12.94 6.01 -106.61 -0.64 -13.58 16 12 C 0.10 1.69 3.11 -67.60 -0.21 1.48 16 13 H 0.03 0.53 7.85 -51.93 -0.41 0.12 16 14 C -0.11 -1.84 6.68 -23.38 -0.16 -2.00 16 15 C -0.11 -1.48 6.61 -25.63 -0.17 -1.65 16 16 C -0.10 -1.44 2.91 -89.47 -0.26 -1.70 16 17 H 0.09 1.51 8.14 -51.93 -0.42 1.09 16 18 C -0.11 -1.30 6.67 -25.63 -0.17 -1.47 16 19 C -0.12 -1.34 6.95 -23.42 -0.16 -1.50 16 20 C -0.11 -1.40 6.45 -26.56 -0.17 -1.57 16 21 C -0.11 -1.55 2.28 -91.07 -0.21 -1.76 16 22 H 0.06 0.76 8.03 -51.93 -0.42 0.34 16 23 C -0.16 -3.76 9.43 -26.69 -0.25 -4.02 16 24 C -0.22 -4.79 9.94 -26.70 -0.27 -5.06 16 25 H 0.26 7.11 8.32 -40.82 -0.34 6.77 16 26 H -0.01 -0.20 8.00 -51.93 -0.42 -0.62 16 27 H 0.07 1.88 8.14 -51.93 -0.42 1.46 16 28 H 0.33 6.30 6.69 -39.29 -0.26 6.04 16 29 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 30 H 0.08 1.66 7.99 -51.93 -0.41 1.24 16 31 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 32 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 33 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 34 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 35 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 36 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 37 H 0.07 1.00 6.56 -51.93 -0.34 0.66 16 38 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 39 H 0.06 1.34 8.14 -51.93 -0.42 0.92 16 40 H 0.08 2.06 8.14 -51.93 -0.42 1.64 16 41 H 0.08 1.66 8.14 -51.93 -0.42 1.24 16 42 H 0.06 1.18 8.14 -51.93 -0.42 0.75 16 LS Contribution 326.97 15.07 4.93 4.93 Total: -1.00 -27.54 326.97 -10.42 -37.96 By element: Atomic # 1 Polarization: 13.43 SS G_CDS: -7.72 Total: 5.71 kcal Atomic # 6 Polarization: -24.30 SS G_CDS: -2.68 Total: -26.97 kcal Atomic # 7 Polarization: -38.28 SS G_CDS: 0.07 Total: -38.20 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -5.02 Total: 16.58 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -27.54 -10.42 -37.96 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000722073329.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.753 kcal (2) G-P(sol) polarization free energy of solvation -27.539 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.214 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.420 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.959 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.794 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds