Wall clock time and date at job start Mon Mar 30 2020 06:28:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86801 * 119.99839 * 2 1 4 4 H 1.48497 * 109.47447 * 239.99982 * 3 2 1 5 5 H 1.48505 * 109.47180 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.47047 * 119.99800 * 3 2 1 7 7 C 1.37876 * 120.00082 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99693 * 184.52508 * 7 2 1 9 9 C 1.50698 * 120.00176 * 4.51739 * 7 2 1 10 10 C 1.52993 * 115.55159 * 275.28775 * 9 7 2 11 11 N 1.46906 * 109.46994 * 302.01549 * 10 9 7 12 12 C 1.46899 * 111.00404 * 182.35505 * 11 10 9 13 13 H 1.08999 * 110.44950 * 36.93686 * 12 11 10 14 14 C 1.56019 * 110.61820 * 274.27772 * 12 11 10 15 15 C 1.56242 * 105.82355 * 247.87039 * 14 12 11 16 16 C 1.51732 * 101.95428 * 25.25310 * 15 14 12 17 17 H 1.09007 * 110.89134 * 71.57469 * 16 15 14 18 18 C 1.51724 * 122.53426 * 205.70421 * 16 15 14 19 19 C 1.56249 * 101.92610 * 153.04131 * 18 16 15 20 20 C 1.55924 * 105.86395 * 334.75291 * 19 18 16 21 21 C 1.49968 * 110.50876 * 159.54119 * 12 11 10 22 22 H 1.09006 * 107.81105 * 197.30130 * 21 12 11 23 23 C 1.53005 * 117.49681 * 60.95193 * 9 7 2 24 24 C 1.52996 * 117.49812 * 129.60902 * 9 7 2 25 25 H 0.97000 * 119.99991 * 5.01203 * 1 2 3 26 26 H 1.09004 * 109.47492 * 182.02274 * 10 9 7 27 27 H 1.09000 * 109.47786 * 62.01708 * 10 9 7 28 28 H 1.00900 * 111.00065 * 306.31770 * 11 10 9 29 29 H 1.09003 * 110.20473 * 128.77548 * 14 12 11 30 30 H 1.09000 * 110.18615 * 6.95368 * 14 12 11 31 31 H 1.08998 * 110.94244 * 267.08070 * 15 14 12 32 32 H 1.08999 * 110.94362 * 143.43038 * 15 14 12 33 33 H 1.09003 * 110.93608 * 271.19533 * 18 16 15 34 34 H 1.09003 * 110.94120 * 34.84592 * 18 16 15 35 35 H 1.08998 * 110.17271 * 93.84322 * 19 18 16 36 36 H 1.08992 * 110.17684 * 215.57876 * 19 18 16 37 37 H 1.08993 * 110.50412 * 112.07406 * 20 19 18 38 38 H 1.09005 * 110.50355 * 234.76873 * 20 19 18 39 39 H 1.09002 * 117.50018 * 215.00403 * 23 9 7 40 40 H 1.09006 * 117.49664 * 0.02741 * 23 9 7 41 41 H 1.09004 * 117.49995 * 359.97438 * 24 9 7 42 42 H 1.08998 * 117.49768 * 144.97527 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.1029 1.6965 -1.2124 5 1 1.2841 2.7465 0.0006 6 1 3.1029 1.6965 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0821 -1.1955 0.0733 9 6 1.2547 -2.4971 -0.1039 10 6 0.7226 -3.0587 1.2160 11 7 1.8390 -3.2535 2.1508 12 6 1.3726 -3.8450 3.4119 13 1 0.5813 -4.5703 3.2227 14 6 0.8741 -2.7348 4.3883 15 6 1.8978 -2.7143 5.5685 16 6 3.1472 -3.2695 4.9104 17 1 3.5752 -2.5460 4.2164 18 6 4.2366 -3.9771 5.6944 19 6 4.8536 -4.9194 4.6113 20 6 3.7244 -5.1613 3.5636 21 6 2.5124 -4.4894 4.1432 22 1 2.0914 -5.1654 4.8875 23 6 0.4143 -2.7307 -1.3610 24 6 1.7226 -3.4995 -1.1608 25 1 -0.4850 0.8368 -0.0734 26 1 0.2315 -4.0144 1.0326 27 1 0.0063 -2.3588 1.6463 28 1 2.5654 -3.8163 1.7342 29 1 -0.1217 -2.9785 4.7586 30 1 0.8622 -1.7684 3.8843 31 1 1.5669 -3.3593 6.3824 32 1 2.0634 -1.6970 5.9230 33 1 4.9776 -3.2664 6.0601 34 1 3.8129 -4.5532 6.5170 35 1 5.7090 -4.4379 4.1375 36 1 5.1570 -5.8636 5.0633 37 1 3.9772 -4.6895 2.6141 38 1 3.5528 -6.2290 3.4268 39 1 -0.5177 -3.2845 -1.2476 40 1 0.4042 -1.9420 -2.1133 41 1 2.5727 -3.2164 -1.7816 42 1 1.6519 -4.5592 -0.9155 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000722073329.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:28:09 Heat of formation + Delta-G solvation = 1.995761 kcal Electronic energy + Delta-G solvation = -19146.802780 eV Core-core repulsion = 16512.012408 eV Total energy + Delta-G solvation = -2634.790372 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 249.179 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.10306 -38.61474 -35.82188 -33.95422 -33.62313 -30.36681 -27.68802 -27.54312 -26.64433 -25.09741 -22.88424 -21.63167 -20.94769 -20.87761 -19.73639 -18.10869 -16.90458 -16.57404 -16.32322 -15.95619 -15.60070 -15.37271 -14.83753 -14.58368 -14.00230 -13.66122 -13.57792 -13.16934 -13.13056 -12.85466 -12.63931 -12.45905 -12.19946 -12.16990 -12.05709 -11.96902 -11.71012 -11.43330 -11.30760 -11.21757 -11.04689 -10.78542 -10.72220 -10.34028 -9.90027 -8.96715 -8.01202 -6.07955 1.42652 1.44379 1.50483 2.48597 3.24900 3.28634 3.34408 3.63238 3.80342 3.90449 4.21344 4.22347 4.36788 4.40449 4.44342 4.54449 4.67499 4.70585 4.72629 4.75606 4.77643 4.84736 4.87481 4.97908 4.98350 5.02932 5.10092 5.15182 5.23261 5.28575 5.33633 5.36407 5.37989 5.53338 5.59792 5.64621 5.72094 5.75395 5.89909 6.41872 6.58889 6.83500 6.94913 7.57227 9.07611 Molecular weight = 249.18amu Principal moments of inertia in cm(-1) A = 0.021038 B = 0.006954 C = 0.006272 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1330.590965 B = 4025.760991 C = 4462.895397 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.913 5.913 2 C 0.023 3.977 3 Si 0.941 3.059 4 H -0.274 1.274 5 H -0.288 1.288 6 H -0.277 1.277 7 C -0.474 4.474 8 H 0.047 0.953 9 C 0.023 3.977 10 C 0.125 3.875 11 N -0.665 5.665 12 C 0.098 3.902 13 H 0.031 0.969 14 C -0.115 4.115 15 C -0.099 4.099 16 C -0.102 4.102 17 H 0.057 0.943 18 C -0.106 4.106 19 C -0.114 4.114 20 C -0.109 4.109 21 C -0.107 4.107 22 H 0.074 0.926 23 C -0.166 4.166 24 C -0.189 4.189 25 H 0.255 0.745 26 H 0.001 0.999 27 H 0.038 0.962 28 H 0.336 0.664 29 H 0.063 0.937 30 H 0.043 0.957 31 H 0.082 0.918 32 H 0.058 0.942 33 H 0.067 0.933 34 H 0.078 0.922 35 H 0.062 0.938 36 H 0.079 0.921 37 H 0.053 0.947 38 H 0.073 0.927 39 H 0.069 0.931 40 H 0.058 0.942 41 H 0.077 0.923 42 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.874 -10.374 10.686 16.010 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.552 5.552 2 C -0.175 4.175 3 Si 0.768 3.232 4 H -0.200 1.200 5 H -0.214 1.214 6 H -0.202 1.202 7 C -0.512 4.512 8 H 0.065 0.935 9 C 0.023 3.977 10 C -0.004 4.004 11 N -0.297 5.297 12 C -0.012 4.012 13 H 0.049 0.951 14 C -0.153 4.153 15 C -0.137 4.137 16 C -0.120 4.120 17 H 0.076 0.924 18 C -0.143 4.143 19 C -0.152 4.152 20 C -0.147 4.147 21 C -0.126 4.126 22 H 0.092 0.908 23 C -0.204 4.204 24 C -0.226 4.226 25 H 0.064 0.936 26 H 0.019 0.981 27 H 0.056 0.944 28 H 0.155 0.845 29 H 0.082 0.918 30 H 0.062 0.938 31 H 0.101 0.899 32 H 0.077 0.923 33 H 0.086 0.914 34 H 0.097 0.903 35 H 0.081 0.919 36 H 0.098 0.902 37 H 0.071 0.929 38 H 0.092 0.908 39 H 0.088 0.912 40 H 0.076 0.924 41 H 0.095 0.905 42 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 5.695 -9.607 10.996 15.673 hybrid contribution -0.301 0.458 -0.810 0.978 sum 5.394 -9.149 10.186 14.716 Atomic orbital electron populations 1.70110 1.06836 1.26823 1.51447 1.25528 0.95431 1.01386 0.95189 0.85889 0.78531 0.80322 0.78474 1.19953 1.21423 1.20209 1.20473 0.92054 0.89953 1.48688 0.93487 1.18980 0.98198 0.93842 0.86726 1.21184 0.91925 0.94778 0.92526 1.60247 1.11720 1.53315 1.04454 1.21457 0.95660 0.93767 0.90320 0.95081 1.22996 0.98449 0.98396 0.95473 1.21854 0.94410 1.00838 0.96550 1.22281 0.95084 0.96670 0.98009 0.92434 1.21938 0.97008 0.97988 0.97367 1.22838 0.97144 0.99827 0.95349 1.21473 0.94415 0.99916 0.98905 1.21649 0.94863 0.97204 0.98862 0.90809 1.22413 0.93186 1.01468 1.03344 1.23003 0.97429 0.96309 1.05890 0.93640 0.98094 0.94358 0.84480 0.91832 0.93839 0.89939 0.92298 0.91416 0.90312 0.91928 0.90184 0.92868 0.90841 0.91240 0.92369 0.90469 0.89464 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -53.60 12.89 21.45 0.28 -53.32 16 2 C 0.02 1.31 5.40 84.65 0.46 1.77 16 3 Si 0.94 45.11 29.54 68.60 2.03 47.14 16 4 H -0.27 -12.77 7.11 99.48 0.71 -12.06 16 5 H -0.29 -13.65 7.11 99.48 0.71 -12.95 16 6 H -0.28 -13.14 7.11 99.48 0.71 -12.43 16 7 C -0.47 -26.23 8.59 25.60 0.22 -26.01 16 8 H 0.05 2.63 7.82 -2.91 -0.02 2.61 16 9 C 0.02 1.14 1.53 -52.93 -0.08 1.06 16 10 C 0.13 5.72 5.42 86.30 0.47 6.19 16 11 N -0.67 -26.45 6.01 -491.20 -2.95 -29.40 16 12 C 0.10 3.22 3.11 44.99 0.14 3.36 16 13 H 0.03 1.03 7.85 -2.39 -0.02 1.01 16 14 C -0.11 -3.77 6.68 32.77 0.22 -3.56 16 15 C -0.10 -2.62 6.61 31.30 0.21 -2.41 16 16 C -0.10 -2.71 2.91 -10.05 -0.03 -2.74 16 17 H 0.06 1.92 8.14 -2.38 -0.02 1.90 16 18 C -0.11 -2.14 6.67 31.30 0.21 -1.93 16 19 C -0.11 -2.24 6.95 32.74 0.23 -2.01 16 20 C -0.11 -2.55 6.45 30.71 0.20 -2.35 16 21 C -0.11 -2.80 2.28 -11.09 -0.03 -2.83 16 22 H 0.07 1.73 8.03 -2.38 -0.02 1.71 16 23 C -0.17 -7.94 9.43 30.62 0.29 -7.65 16 24 C -0.19 -8.07 9.94 30.62 0.30 -7.76 16 25 H 0.25 14.46 8.32 -92.71 -0.77 13.69 16 26 H 0.00 0.05 8.00 -2.39 -0.02 0.03 16 27 H 0.04 2.01 8.14 -2.39 -0.02 1.99 16 28 H 0.34 12.68 6.69 -89.69 -0.60 12.08 16 29 H 0.06 1.90 8.14 -2.39 -0.02 1.88 16 30 H 0.04 1.78 7.99 -2.39 -0.02 1.76 16 31 H 0.08 1.79 8.14 -2.39 -0.02 1.77 16 32 H 0.06 1.57 8.14 -2.39 -0.02 1.55 16 33 H 0.07 1.30 8.14 -2.39 -0.02 1.28 16 34 H 0.08 1.36 8.14 -2.39 -0.02 1.34 16 35 H 0.06 1.26 8.14 -2.39 -0.02 1.24 16 36 H 0.08 1.25 8.14 -2.39 -0.02 1.23 16 37 H 0.05 1.43 6.56 -2.39 -0.02 1.41 16 38 H 0.07 1.49 8.14 -2.38 -0.02 1.47 16 39 H 0.07 3.13 8.14 -2.39 -0.02 3.11 16 40 H 0.06 3.01 8.14 -2.38 -0.02 2.99 16 41 H 0.08 3.26 8.14 -2.39 -0.02 3.25 16 42 H 0.09 3.23 8.14 -2.39 -0.02 3.21 16 Total: -1.00 -59.90 326.97 2.52 -57.38 By element: Atomic # 1 Polarization: 24.71 SS G_CDS: 0.36 Total: 25.07 kcal Atomic # 6 Polarization: -49.67 SS G_CDS: 2.80 Total: -46.86 kcal Atomic # 7 Polarization: -80.05 SS G_CDS: -2.68 Total: -82.72 kcal Atomic # 14 Polarization: 45.11 SS G_CDS: 2.03 Total: 47.14 kcal Total: -59.90 2.52 -57.38 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000722073329.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.376 kcal (2) G-P(sol) polarization free energy of solvation -59.896 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.521 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.517 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.380 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.996 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds