Wall clock time and date at job start Mon Mar 30 2020 06:28:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86797 * 119.99987 * 2 1 4 4 H 1.48504 * 109.47266 * 269.99891 * 3 2 1 5 5 H 1.48495 * 109.47236 * 29.99877 * 3 2 1 6 6 H 1.48501 * 109.47124 * 150.00132 * 3 2 1 7 7 C 1.37876 * 120.00007 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00089 * 170.52423 * 7 2 1 9 9 C 1.50700 * 119.99863 * 350.51992 * 7 2 1 10 10 C 1.52995 * 115.55217 * 324.35748 * 9 7 2 11 11 N 1.46903 * 109.47178 * 305.93033 * 10 9 7 12 12 C 1.46892 * 111.00226 * 187.23090 * 11 10 9 13 13 H 1.08999 * 109.93773 * 38.02022 * 12 11 10 14 14 C 1.53485 * 109.85032 * 277.02669 * 12 11 10 15 15 C 1.53504 * 107.21723 * 241.60677 * 14 12 11 16 16 C 1.54099 * 106.35997 * 342.16460 * 15 14 12 17 17 H 1.08997 * 112.92501 * 265.03701 * 16 15 14 18 18 C 1.54110 * 108.32102 * 140.31497 * 16 15 14 19 19 C 1.54209 * 106.77273 * 249.23779 * 18 16 15 20 20 C 1.54954 * 104.25147 * 22.88996 * 19 18 16 21 21 C 1.53179 * 109.85138 * 159.02152 * 12 11 10 22 22 H 1.09005 * 112.38945 * 258.13598 * 21 12 11 23 23 C 1.53002 * 117.49590 * 110.02523 * 9 7 2 24 24 C 1.53004 * 117.49856 * 178.68345 * 9 7 2 25 25 H 0.97002 * 119.99774 * 5.09926 * 1 2 3 26 26 H 1.08996 * 109.47266 * 185.93513 * 10 9 7 27 27 H 1.09002 * 109.47592 * 65.92808 * 10 9 7 28 28 H 1.00901 * 110.99854 * 63.27749 * 11 10 9 29 29 H 1.09000 * 109.89049 * 122.20573 * 14 12 11 30 30 H 1.08997 * 110.02822 * 1.08509 * 14 12 11 31 31 H 1.09007 * 110.07621 * 222.94160 * 15 14 12 32 32 H 1.09000 * 110.07712 * 101.39347 * 15 14 12 33 33 H 1.09001 * 109.99522 * 129.90766 * 18 16 15 34 34 H 1.08994 * 109.99581 * 8.56888 * 18 16 15 35 35 H 1.09004 * 110.47984 * 141.57985 * 19 18 16 36 36 H 1.09006 * 110.47911 * 264.19987 * 19 18 16 37 37 H 1.09000 * 110.78353 * 80.10018 * 20 19 18 38 38 H 1.08995 * 110.79006 * 203.37056 * 20 19 18 39 39 H 1.09001 * 117.49542 * 215.00283 * 23 9 7 40 40 H 1.08998 * 117.50419 * 0.02562 * 23 9 7 41 41 H 1.08994 * 117.49836 * 359.97438 * 24 9 7 42 42 H 1.08996 * 117.49739 * 144.97734 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4466 2.6526 0.7000 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 3.0735 -1.2004 -0.1545 9 6 1.2664 -2.4903 0.2138 10 6 0.0931 -2.4274 1.1937 11 7 0.5529 -1.8707 2.4731 12 6 -0.5015 -1.9531 3.4924 13 1 -1.0506 -2.8885 3.3844 14 6 -1.4621 -0.7650 3.3459 15 6 -1.3917 0.0399 4.6511 16 6 -0.7655 -0.8948 5.7041 17 1 -1.5101 -1.4169 6.3049 18 6 0.2018 -0.0669 6.5725 19 6 1.6273 -0.5461 6.2312 20 6 1.4927 -1.1680 4.8183 21 6 0.1191 -1.8727 4.8905 22 1 0.1908 -2.8491 5.3698 23 6 1.1383 -3.4363 -0.9818 24 6 2.0830 -3.7835 0.1715 25 1 -0.4850 0.8368 -0.0747 26 1 -0.3001 -3.4311 1.3547 27 1 -0.6907 -1.7918 0.7818 28 1 0.8729 -0.9205 2.3598 29 1 -2.4780 -1.1268 3.1876 30 1 -1.1566 -0.1392 2.5074 31 1 -2.3935 0.3363 4.9623 32 1 -0.7658 0.9216 4.5137 33 1 -0.0061 -0.2380 7.6287 34 1 0.0987 0.9926 6.3387 35 1 2.3187 0.2964 6.2126 36 1 1.9591 -1.2971 6.9483 37 1 1.4896 -0.3919 4.0529 38 1 2.2907 -1.8873 4.6346 39 1 0.2181 -4.0138 -1.0702 40 1 1.5882 -3.1214 -1.9233 41 1 3.1539 -3.6968 -0.0118 42 1 1.7845 -4.5893 0.8421 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000722073339.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:28:16 Heat of formation + Delta-G solvation = 7.650924 kcal Electronic energy + Delta-G solvation = -19577.679978 eV Core-core repulsion = 16943.134833 eV Total energy + Delta-G solvation = -2634.545146 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 249.179 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -39.56975 -36.75117 -34.22522 -32.20076 -31.79217 -28.92982 -26.81976 -25.67450 -24.84226 -23.35628 -21.01327 -20.24227 -19.51962 -18.93871 -18.28022 -16.39483 -15.92913 -14.90204 -14.60526 -14.28224 -13.67952 -13.56711 -13.28610 -13.05354 -12.53112 -12.41983 -11.84808 -11.47306 -11.24041 -11.01190 -10.96316 -10.77437 -10.68678 -10.50634 -10.46793 -10.35850 -10.18759 -10.10149 -10.04678 -9.89157 -9.71353 -9.15814 -8.99818 -8.63201 -8.04849 -7.06972 -5.96018 -4.05244 3.25088 3.33650 3.38761 4.36358 4.74050 4.85284 4.97958 5.02637 5.42404 5.52812 5.58192 5.61074 5.72338 5.77254 5.86761 5.98791 6.00506 6.04439 6.17594 6.24658 6.26105 6.30914 6.34321 6.45371 6.46932 6.52591 6.65091 6.74030 6.78556 6.80078 6.85045 6.89023 6.91442 7.04014 7.07946 7.31646 7.43991 7.64816 8.00665 8.40441 8.51267 8.72403 8.94802 9.52172 10.96884 Molecular weight = 249.18amu Principal moments of inertia in cm(-1) A = 0.019586 B = 0.008543 C = 0.007348 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1429.249433 B = 3276.632158 C = 3809.816843 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.883 5.883 2 C 0.067 3.933 3 Si 0.884 3.116 4 H -0.282 1.282 5 H -0.285 1.285 6 H -0.272 1.272 7 C -0.472 4.472 8 H 0.057 0.943 9 C 0.062 3.938 10 C 0.101 3.899 11 N -0.666 5.666 12 C 0.093 3.907 13 H 0.062 0.938 14 C -0.155 4.155 15 C -0.112 4.112 16 C -0.096 4.096 17 H 0.072 0.928 18 C -0.118 4.118 19 C -0.130 4.130 20 C -0.096 4.096 21 C -0.078 4.078 22 H 0.071 0.929 23 C -0.209 4.209 24 C -0.204 4.204 25 H 0.259 0.741 26 H 0.020 0.980 27 H 0.077 0.923 28 H 0.353 0.647 29 H 0.050 0.950 30 H 0.083 0.917 31 H 0.052 0.948 32 H 0.061 0.939 33 H 0.052 0.948 34 H 0.060 0.940 35 H 0.058 0.942 36 H 0.058 0.942 37 H 0.070 0.930 38 H 0.069 0.931 39 H 0.061 0.939 40 H 0.074 0.926 41 H 0.070 0.930 42 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.144 -0.541 10.300 10.535 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.522 5.522 2 C -0.134 4.134 3 Si 0.712 3.288 4 H -0.208 1.208 5 H -0.211 1.211 6 H -0.196 1.196 7 C -0.509 4.509 8 H 0.076 0.924 9 C 0.061 3.939 10 C -0.028 4.028 11 N -0.298 5.298 12 C -0.019 4.019 13 H 0.080 0.920 14 C -0.195 4.195 15 C -0.150 4.150 16 C -0.114 4.114 17 H 0.091 0.909 18 C -0.156 4.156 19 C -0.168 4.168 20 C -0.134 4.134 21 C -0.097 4.097 22 H 0.089 0.911 23 C -0.248 4.248 24 C -0.242 4.242 25 H 0.069 0.931 26 H 0.039 0.961 27 H 0.094 0.906 28 H 0.174 0.826 29 H 0.069 0.931 30 H 0.101 0.899 31 H 0.071 0.929 32 H 0.079 0.921 33 H 0.071 0.929 34 H 0.079 0.921 35 H 0.076 0.924 36 H 0.077 0.923 37 H 0.088 0.912 38 H 0.088 0.912 39 H 0.080 0.920 40 H 0.092 0.908 41 H 0.088 0.912 42 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -1.984 -0.965 10.549 10.777 hybrid contribution -0.239 1.513 -0.481 1.605 sum -2.222 0.548 10.068 10.325 Atomic orbital electron populations 1.69900 1.05623 1.26338 1.50300 1.24947 0.94828 0.98741 0.94892 0.86692 0.80271 0.83611 0.78234 1.20816 1.21106 1.19626 1.20559 0.93622 0.89200 1.47568 0.92435 1.18921 0.94161 0.88436 0.92363 1.21465 0.97501 0.95737 0.88120 1.60659 1.33773 1.27839 1.07566 1.21756 0.91262 0.96474 0.92389 0.92012 1.22804 0.99952 0.98600 0.98123 1.22159 0.99673 0.98088 0.95071 1.22467 0.96940 0.96047 0.95993 0.90911 1.22303 0.95203 0.99402 0.98664 1.22464 0.96158 0.99874 0.98288 1.22211 0.96710 0.99650 0.94853 1.22328 0.95244 0.97527 0.94607 0.91091 1.22951 0.99476 1.07881 0.94486 1.22815 0.96390 1.02484 1.02498 0.93064 0.96141 0.90554 0.82557 0.93069 0.89881 0.92936 0.92071 0.92878 0.92084 0.92366 0.92342 0.91167 0.91219 0.92048 0.90758 0.91163 0.91573 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -22.98 10.61 55.43 0.59 -22.39 16 2 C 0.07 1.73 4.27 -17.82 -0.08 1.66 16 3 Si 0.88 20.33 29.55 -169.99 -5.02 15.30 16 4 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 5 H -0.29 -6.52 7.11 56.52 0.40 -6.11 16 6 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 7 C -0.47 -12.48 8.49 -34.44 -0.29 -12.78 16 8 H 0.06 1.56 7.83 -52.49 -0.41 1.14 16 9 C 0.06 1.52 2.09 -155.66 -0.33 1.20 16 10 C 0.10 2.33 4.70 -3.82 -0.02 2.31 16 11 N -0.67 -14.08 5.04 -106.37 -0.54 -14.61 16 12 C 0.09 1.66 3.05 -67.37 -0.21 1.46 16 13 H 0.06 1.12 7.76 -51.93 -0.40 0.72 16 14 C -0.16 -2.72 6.25 -26.22 -0.16 -2.88 16 15 C -0.11 -1.68 6.10 -25.90 -0.16 -1.84 16 16 C -0.10 -1.32 3.90 -88.44 -0.35 -1.67 16 17 H 0.07 0.93 8.14 -51.93 -0.42 0.50 16 18 C -0.12 -1.50 6.34 -25.52 -0.16 -1.67 16 19 C -0.13 -1.74 6.82 -25.07 -0.17 -1.91 16 20 C -0.10 -1.55 5.30 -24.88 -0.13 -1.68 16 21 C -0.08 -1.22 3.62 -88.69 -0.32 -1.54 16 22 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 23 C -0.21 -4.85 9.96 -26.69 -0.27 -5.12 16 24 C -0.20 -4.61 9.92 -26.69 -0.26 -4.87 16 25 H 0.26 6.55 8.32 -40.82 -0.34 6.21 16 26 H 0.02 0.46 7.84 -51.93 -0.41 0.05 16 27 H 0.08 1.94 5.95 -51.93 -0.31 1.63 16 28 H 0.35 8.10 5.14 -39.29 -0.20 7.90 16 29 H 0.05 0.86 8.14 -51.93 -0.42 0.43 16 30 H 0.08 1.70 7.65 -51.93 -0.40 1.31 16 31 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 32 H 0.06 0.95 7.28 -51.93 -0.38 0.58 16 33 H 0.05 0.60 8.14 -51.93 -0.42 0.17 16 34 H 0.06 0.78 7.18 -51.93 -0.37 0.40 16 35 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 36 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 37 H 0.07 1.28 6.51 -51.93 -0.34 0.94 16 38 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 39 H 0.06 1.34 8.14 -51.93 -0.42 0.92 16 40 H 0.07 1.73 8.14 -51.93 -0.42 1.31 16 41 H 0.07 1.56 8.14 -51.93 -0.42 1.14 16 42 H 0.07 1.40 8.14 -51.93 -0.42 0.98 16 LS Contribution 316.51 15.07 4.77 4.77 Total: -1.00 -25.21 316.51 -10.53 -35.74 By element: Atomic # 1 Polarization: 17.95 SS G_CDS: -7.43 Total: 10.52 kcal Atomic # 6 Polarization: -26.43 SS G_CDS: -2.90 Total: -29.33 kcal Atomic # 7 Polarization: -37.05 SS G_CDS: 0.05 Total: -37.00 kcal Atomic # 14 Polarization: 20.33 SS G_CDS: -5.02 Total: 15.30 kcal Total LS contribution 4.77 Total: 4.77 kcal Total: -25.21 -10.53 -35.74 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000722073339.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.387 kcal (2) G-P(sol) polarization free energy of solvation -25.206 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.181 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.530 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.736 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.651 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds