Wall clock time and date at job start Mon Mar 30 2020 06:28:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86797 * 119.99987 * 2 1 4 4 H 1.48504 * 109.47266 * 269.99891 * 3 2 1 5 5 H 1.48495 * 109.47236 * 29.99877 * 3 2 1 6 6 H 1.48501 * 109.47124 * 150.00132 * 3 2 1 7 7 C 1.37876 * 120.00007 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00089 * 170.52423 * 7 2 1 9 9 C 1.50700 * 119.99863 * 350.51992 * 7 2 1 10 10 C 1.52995 * 115.55217 * 324.35748 * 9 7 2 11 11 N 1.46903 * 109.47178 * 305.93033 * 10 9 7 12 12 C 1.46892 * 111.00226 * 187.23090 * 11 10 9 13 13 H 1.08999 * 109.93773 * 38.02022 * 12 11 10 14 14 C 1.53485 * 109.85032 * 277.02669 * 12 11 10 15 15 C 1.53504 * 107.21723 * 241.60677 * 14 12 11 16 16 C 1.54099 * 106.35997 * 342.16460 * 15 14 12 17 17 H 1.08997 * 112.92501 * 265.03701 * 16 15 14 18 18 C 1.54110 * 108.32102 * 140.31497 * 16 15 14 19 19 C 1.54209 * 106.77273 * 249.23779 * 18 16 15 20 20 C 1.54954 * 104.25147 * 22.88996 * 19 18 16 21 21 C 1.53179 * 109.85138 * 159.02152 * 12 11 10 22 22 H 1.09005 * 112.38945 * 258.13598 * 21 12 11 23 23 C 1.53002 * 117.49590 * 110.02523 * 9 7 2 24 24 C 1.53004 * 117.49856 * 178.68345 * 9 7 2 25 25 H 0.97002 * 119.99774 * 5.09926 * 1 2 3 26 26 H 1.08996 * 109.47266 * 185.93513 * 10 9 7 27 27 H 1.09002 * 109.47592 * 65.92808 * 10 9 7 28 28 H 1.00901 * 110.99854 * 63.27749 * 11 10 9 29 29 H 1.09000 * 109.89049 * 122.20573 * 14 12 11 30 30 H 1.08997 * 110.02822 * 1.08509 * 14 12 11 31 31 H 1.09007 * 110.07621 * 222.94160 * 15 14 12 32 32 H 1.09000 * 110.07712 * 101.39347 * 15 14 12 33 33 H 1.09001 * 109.99522 * 129.90766 * 18 16 15 34 34 H 1.08994 * 109.99581 * 8.56888 * 18 16 15 35 35 H 1.09004 * 110.47984 * 141.57985 * 19 18 16 36 36 H 1.09006 * 110.47911 * 264.19987 * 19 18 16 37 37 H 1.09000 * 110.78353 * 80.10018 * 20 19 18 38 38 H 1.08995 * 110.79006 * 203.37056 * 20 19 18 39 39 H 1.09001 * 117.49542 * 215.00283 * 23 9 7 40 40 H 1.08998 * 117.50419 * 0.02562 * 23 9 7 41 41 H 1.08994 * 117.49836 * 359.97438 * 24 9 7 42 42 H 1.08996 * 117.49739 * 144.97734 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4466 2.6526 0.7000 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 3.0735 -1.2004 -0.1545 9 6 1.2664 -2.4903 0.2138 10 6 0.0931 -2.4274 1.1937 11 7 0.5529 -1.8707 2.4731 12 6 -0.5015 -1.9531 3.4924 13 1 -1.0506 -2.8885 3.3844 14 6 -1.4621 -0.7650 3.3459 15 6 -1.3917 0.0399 4.6511 16 6 -0.7655 -0.8948 5.7041 17 1 -1.5101 -1.4169 6.3049 18 6 0.2018 -0.0669 6.5725 19 6 1.6273 -0.5461 6.2312 20 6 1.4927 -1.1680 4.8183 21 6 0.1191 -1.8727 4.8905 22 1 0.1908 -2.8491 5.3698 23 6 1.1383 -3.4363 -0.9818 24 6 2.0830 -3.7835 0.1715 25 1 -0.4850 0.8368 -0.0747 26 1 -0.3001 -3.4311 1.3547 27 1 -0.6907 -1.7918 0.7818 28 1 0.8729 -0.9205 2.3598 29 1 -2.4780 -1.1268 3.1876 30 1 -1.1566 -0.1392 2.5074 31 1 -2.3935 0.3363 4.9623 32 1 -0.7658 0.9216 4.5137 33 1 -0.0061 -0.2380 7.6287 34 1 0.0987 0.9926 6.3387 35 1 2.3187 0.2964 6.2126 36 1 1.9591 -1.2971 6.9483 37 1 1.4896 -0.3919 4.0529 38 1 2.2907 -1.8873 4.6346 39 1 0.2181 -4.0138 -1.0702 40 1 1.5882 -3.1214 -1.9233 41 1 3.1539 -3.6968 -0.0118 42 1 1.7845 -4.5893 0.8421 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000722073339.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:28:15 Heat of formation + Delta-G solvation = -3.287226 kcal Electronic energy + Delta-G solvation = -19578.154292 eV Core-core repulsion = 16943.134833 eV Total energy + Delta-G solvation = -2635.019459 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 249.179 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.85426 -38.55844 -35.67476 -34.13622 -33.21848 -30.28482 -28.05573 -27.59182 -26.33945 -24.96193 -22.86117 -21.46197 -20.88104 -20.71854 -19.56969 -18.15122 -17.35553 -16.65932 -16.21269 -15.75817 -15.46295 -14.86843 -14.77016 -14.44740 -14.20475 -13.76911 -13.51331 -13.00566 -12.92471 -12.83290 -12.60156 -12.40168 -12.19895 -11.97313 -11.93937 -11.89571 -11.59842 -11.39796 -11.28415 -11.15033 -11.04183 -11.01638 -10.87067 -10.51166 -9.96307 -8.79379 -7.93045 -6.10120 1.38864 1.43957 1.52440 2.42968 3.04301 3.45115 3.62709 3.73488 3.82964 4.07416 4.31894 4.33381 4.41761 4.43518 4.52596 4.64681 4.73265 4.75165 4.77387 4.86432 4.91708 4.97552 4.99809 5.01964 5.07991 5.13332 5.18953 5.20916 5.21688 5.24432 5.35481 5.48136 5.50456 5.54080 5.59581 5.65050 5.67583 5.69981 6.03265 6.49733 6.70387 6.85162 7.03054 7.48898 8.95621 Molecular weight = 249.18amu Principal moments of inertia in cm(-1) A = 0.019586 B = 0.008543 C = 0.007348 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1429.249433 B = 3276.632158 C = 3809.816843 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.038 3.962 3 Si 0.935 3.065 4 H -0.282 1.282 5 H -0.281 1.281 6 H -0.272 1.272 7 C -0.494 4.494 8 H 0.043 0.957 9 C 0.033 3.967 10 C 0.113 3.887 11 N -0.665 5.665 12 C 0.088 3.912 13 H 0.060 0.940 14 C -0.151 4.151 15 C -0.108 4.108 16 C -0.087 4.087 17 H 0.094 0.906 18 C -0.115 4.115 19 C -0.124 4.124 20 C -0.098 4.098 21 C -0.076 4.076 22 H 0.083 0.917 23 C -0.209 4.209 24 C -0.189 4.189 25 H 0.258 0.742 26 H 0.025 0.975 27 H 0.051 0.949 28 H 0.341 0.659 29 H 0.055 0.945 30 H 0.047 0.953 31 H 0.071 0.929 32 H 0.050 0.950 33 H 0.077 0.923 34 H 0.060 0.940 35 H 0.060 0.940 36 H 0.074 0.926 37 H 0.041 0.959 38 H 0.055 0.945 39 H 0.073 0.927 40 H 0.067 0.933 41 H 0.070 0.930 42 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.442 -0.559 12.312 12.564 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.162 4.162 3 Si 0.762 3.238 4 H -0.209 1.209 5 H -0.207 1.207 6 H -0.197 1.197 7 C -0.531 4.531 8 H 0.061 0.939 9 C 0.033 3.967 10 C -0.017 4.017 11 N -0.296 5.296 12 C -0.023 4.023 13 H 0.078 0.922 14 C -0.191 4.191 15 C -0.146 4.146 16 C -0.106 4.106 17 H 0.113 0.887 18 C -0.152 4.152 19 C -0.162 4.162 20 C -0.136 4.136 21 C -0.095 4.095 22 H 0.101 0.899 23 C -0.247 4.247 24 C -0.226 4.226 25 H 0.068 0.932 26 H 0.043 0.957 27 H 0.069 0.931 28 H 0.161 0.839 29 H 0.073 0.927 30 H 0.066 0.934 31 H 0.090 0.910 32 H 0.069 0.931 33 H 0.096 0.904 34 H 0.078 0.922 35 H 0.079 0.921 36 H 0.093 0.907 37 H 0.060 0.940 38 H 0.074 0.926 39 H 0.092 0.908 40 H 0.085 0.915 41 H 0.088 0.912 42 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -2.286 -0.994 12.566 12.811 hybrid contribution -0.150 1.484 -1.159 1.889 sum -2.436 0.490 11.407 11.674 Atomic orbital electron populations 1.70011 1.06306 1.26689 1.50101 1.25413 0.95454 1.00840 0.94501 0.85896 0.79239 0.80710 0.77948 1.20855 1.20682 1.19654 1.20666 0.93119 0.90660 1.48694 0.93865 1.19091 0.95341 0.88623 0.93663 1.21231 0.96254 0.95379 0.88787 1.60680 1.34974 1.26827 1.07131 1.21896 0.90890 0.96539 0.92978 0.92204 1.22685 0.99784 0.98212 0.98397 1.22135 1.00779 0.97589 0.94051 1.22463 0.97163 0.95330 0.95628 0.88749 1.22285 0.94069 0.99052 0.99796 1.22434 0.97011 1.00245 0.96495 1.22127 0.96691 0.98720 0.96037 1.22334 0.95171 0.98694 0.93316 0.89910 1.22944 1.00194 1.07550 0.94024 1.22793 0.96186 1.01592 1.02007 0.93196 0.95699 0.93082 0.83917 0.92658 0.93377 0.91034 0.93086 0.90434 0.92168 0.92080 0.90722 0.94043 0.92573 0.90807 0.91479 0.91157 0.90055 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -47.38 10.61 21.45 0.23 -47.16 16 2 C 0.04 2.00 4.27 84.65 0.36 2.37 16 3 Si 0.94 42.29 29.55 68.60 2.03 44.31 16 4 H -0.28 -12.74 7.11 99.48 0.71 -12.03 16 5 H -0.28 -12.45 7.11 99.48 0.71 -11.74 16 6 H -0.27 -12.21 7.11 99.48 0.71 -11.50 16 7 C -0.49 -26.62 8.49 25.60 0.22 -26.40 16 8 H 0.04 2.39 7.83 -2.91 -0.02 2.37 16 9 C 0.03 1.67 2.09 -52.93 -0.11 1.56 16 10 C 0.11 5.31 4.70 86.30 0.41 5.71 16 11 N -0.67 -28.53 5.04 -490.44 -2.47 -31.00 16 12 C 0.09 3.13 3.05 45.14 0.14 3.26 16 13 H 0.06 2.13 7.76 -2.39 -0.02 2.11 16 14 C -0.15 -5.28 6.25 30.93 0.19 -5.08 16 15 C -0.11 -3.05 6.10 31.14 0.19 -2.86 16 16 C -0.09 -2.16 3.90 -9.38 -0.04 -2.19 16 17 H 0.09 1.99 8.14 -2.39 -0.02 1.97 16 18 C -0.11 -2.53 6.34 31.38 0.20 -2.34 16 19 C -0.12 -3.02 6.82 31.67 0.22 -2.81 16 20 C -0.10 -3.07 5.30 31.79 0.17 -2.90 16 21 C -0.08 -2.26 3.62 -9.54 -0.03 -2.29 16 22 H 0.08 2.27 8.14 -2.38 -0.02 2.25 16 23 C -0.21 -9.63 9.96 30.62 0.30 -9.33 16 24 C -0.19 -8.39 9.92 30.62 0.30 -8.09 16 25 H 0.26 13.30 8.32 -92.71 -0.77 12.53 16 26 H 0.02 1.11 7.84 -2.39 -0.02 1.10 16 27 H 0.05 2.67 5.95 -2.39 -0.01 2.65 16 28 H 0.34 16.12 5.14 -89.69 -0.46 15.66 16 29 H 0.05 1.83 8.14 -2.39 -0.02 1.81 16 30 H 0.05 2.02 7.65 -2.39 -0.02 2.00 16 31 H 0.07 1.76 8.14 -2.38 -0.02 1.74 16 32 H 0.05 1.54 7.28 -2.39 -0.02 1.53 16 33 H 0.08 1.39 8.14 -2.39 -0.02 1.37 16 34 H 0.06 1.36 7.18 -2.39 -0.02 1.34 16 35 H 0.06 1.45 8.14 -2.39 -0.02 1.43 16 36 H 0.07 1.59 8.14 -2.38 -0.02 1.57 16 37 H 0.04 1.53 6.51 -2.39 -0.02 1.52 16 38 H 0.06 1.87 8.14 -2.39 -0.02 1.85 16 39 H 0.07 3.18 8.14 -2.39 -0.02 3.16 16 40 H 0.07 3.15 8.14 -2.39 -0.02 3.13 16 41 H 0.07 3.10 8.14 -2.39 -0.02 3.08 16 42 H 0.08 3.34 8.14 -2.39 -0.02 3.32 16 Total: -1.00 -53.84 316.51 2.81 -51.04 By element: Atomic # 1 Polarization: 33.69 SS G_CDS: 0.51 Total: 34.20 kcal Atomic # 6 Polarization: -53.91 SS G_CDS: 2.52 Total: -51.39 kcal Atomic # 7 Polarization: -75.91 SS G_CDS: -2.25 Total: -78.15 kcal Atomic # 14 Polarization: 42.29 SS G_CDS: 2.03 Total: 44.31 kcal Total: -53.84 2.81 -51.04 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000722073339.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.748 kcal (2) G-P(sol) polarization free energy of solvation -53.845 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.097 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.809 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.035 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.287 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds