Wall clock time and date at job start Mon Mar 30 2020 06:52:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 120.00321 * 2 1 4 4 H 1.48506 * 109.46985 * 359.97438 * 3 2 1 5 5 H 1.48494 * 109.47276 * 119.99911 * 3 2 1 6 6 H 1.48498 * 109.47150 * 240.00121 * 3 2 1 7 7 C 1.37885 * 119.99913 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99535 * 179.97438 * 7 2 1 9 9 C 1.50694 * 119.99902 * 359.97438 * 7 2 1 10 10 C 1.53001 * 109.47168 * 180.02562 * 9 7 2 11 11 C 1.53120 * 109.52075 * 294.68273 * 10 9 7 12 12 C 1.53037 * 109.27874 * 182.43963 * 11 10 9 13 13 N 1.46845 * 109.52442 * 59.17687 * 12 11 10 14 14 C 1.46896 * 111.00223 * 174.16047 * 13 12 11 15 15 C 1.52997 * 109.47171 * 294.21305 * 14 13 12 16 16 H 1.08997 * 115.55456 * 330.66902 * 15 14 13 17 17 C 1.53007 * 117.50049 * 116.37891 * 15 14 13 18 18 C 1.52996 * 59.99966 * 107.49009 * 17 15 14 19 19 C 1.52988 * 138.58777 * 130.89512 * 18 17 15 20 20 C 1.52995 * 138.58921 * 229.11002 * 18 17 15 21 21 C 1.46844 * 111.20208 * 298.26223 * 13 12 11 22 22 C 1.53041 * 109.52628 * 61.73711 * 21 13 12 23 23 H 0.97001 * 119.99646 * 359.97438 * 1 2 3 24 24 H 1.09007 * 109.47443 * 300.00164 * 9 7 2 25 25 H 1.09003 * 109.47615 * 60.00205 * 9 7 2 26 26 H 1.09003 * 109.52123 * 54.87505 * 10 9 7 27 27 H 1.08998 * 109.50255 * 302.37724 * 11 10 9 28 28 H 1.09001 * 109.50298 * 62.50125 * 11 10 9 29 29 H 1.09002 * 109.46395 * 299.16507 * 12 11 10 30 30 H 1.08991 * 109.46453 * 179.19693 * 12 11 10 31 31 H 1.08998 * 109.47157 * 54.21548 * 14 13 12 32 32 H 1.09003 * 109.47026 * 174.21336 * 14 13 12 33 33 H 1.08996 * 117.49924 * 214.98041 * 17 15 14 34 34 H 1.08997 * 117.49465 * 359.97438 * 17 15 14 35 35 H 1.09003 * 117.49635 * 238.38030 * 19 18 17 36 36 H 1.08995 * 117.50427 * 23.40505 * 19 18 17 37 37 H 1.08997 * 117.49598 * 336.59621 * 20 18 17 38 38 H 1.09004 * 117.49951 * 121.61618 * 20 18 17 39 39 H 1.09002 * 109.46321 * 301.72556 * 21 13 12 40 40 H 1.08996 * 109.46867 * 181.75874 * 21 13 12 41 41 H 1.08998 * 109.50738 * 180.88412 * 22 21 13 42 42 H 1.09003 * 109.50108 * 60.76177 * 22 21 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 1.2842 2.7465 -0.0006 5 1 3.1030 1.6963 1.2125 6 1 3.1030 1.6963 -1.2125 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 6 2.2453 -3.6621 -0.0005 11 6 3.0358 -3.6594 -1.3119 12 6 3.9851 -4.8596 -1.3321 13 7 3.2097 -6.1007 -1.2096 14 6 4.0736 -7.2786 -1.3641 15 6 4.6223 -7.3250 -2.7915 16 1 3.9843 -6.8804 -3.5552 17 6 6.1362 -7.1939 -2.9712 18 6 5.4542 -8.5460 -3.1893 19 6 5.4268 -9.6616 -4.2359 20 6 5.6316 -10.0033 -2.7586 21 6 2.4792 -6.1471 0.0634 22 6 1.4850 -4.9853 0.1253 23 1 -0.4850 0.8401 0.0004 24 1 0.6247 -2.5571 0.8897 25 1 0.6240 -2.5568 -0.8903 26 1 2.9312 -3.5549 0.8397 27 1 2.3458 -3.7271 -2.1529 28 1 3.6129 -2.7378 -1.3870 29 1 4.6837 -4.7843 -0.4987 30 1 4.5392 -4.8687 -2.2706 31 1 4.9019 -7.2168 -0.6583 32 1 3.4954 -8.1816 -1.1676 33 1 6.4942 -6.6627 -3.8530 34 1 6.7410 -7.0741 -2.0724 35 1 4.4634 -9.9104 -4.6811 36 1 6.2881 -9.7523 -4.8975 37 1 6.6278 -10.3187 -2.4485 38 1 4.8030 -10.4769 -2.2320 39 1 3.1848 -6.0656 0.8902 40 1 1.9397 -7.0912 0.1384 41 1 0.9541 -5.0109 1.0769 42 1 0.7706 -5.0737 -0.6932 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000722886945.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:52:56 Heat of formation + Delta-G solvation = 38.438246 kcal Electronic energy + Delta-G solvation = -18162.482586 eV Core-core repulsion = 15529.272479 eV Total energy + Delta-G solvation = -2633.210107 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 249.179 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -39.20396 -37.96043 -34.63971 -32.88954 -31.83076 -30.29250 -28.32047 -25.67979 -23.34358 -22.64147 -22.56180 -21.04001 -20.51194 -18.99274 -18.79100 -16.23568 -15.95753 -15.24882 -14.97743 -14.68031 -14.44462 -14.22163 -13.70058 -13.41898 -12.88015 -12.71447 -12.19705 -11.88421 -11.77394 -11.69683 -11.51301 -11.25151 -11.04197 -10.79016 -10.60390 -10.56937 -10.27099 -10.11567 -10.03037 -9.88780 -9.81639 -9.47411 -8.99446 -8.83871 -8.29052 -8.04065 -5.94086 -3.95435 3.35929 3.40423 3.42680 3.47485 3.54149 4.01191 4.29210 4.50158 4.70238 4.74244 5.21466 5.32008 5.37430 5.39316 5.40834 5.43112 5.49768 5.54678 5.57877 5.63477 5.68146 5.71293 5.82975 5.85813 5.91119 5.95876 6.04576 6.19492 6.20953 6.30599 6.50687 6.63818 6.73293 7.03589 7.16044 7.25030 7.41149 7.45530 7.74338 7.91713 8.07086 8.50308 9.11054 9.67728 11.17282 Molecular weight = 249.18amu Principal moments of inertia in cm(-1) A = 0.040540 B = 0.003944 C = 0.003716 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 690.514001 B = 7098.422483 C = 7532.206500 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.056 3.944 3 Si 0.889 3.111 4 H -0.288 1.288 5 H -0.278 1.278 6 H -0.277 1.277 7 C -0.515 4.515 8 H 0.054 0.946 9 C 0.028 3.972 10 C -0.082 4.082 11 C -0.100 4.100 12 C 0.057 3.943 13 N -0.535 5.535 14 C 0.087 3.913 15 C -0.086 4.086 16 H 0.114 0.886 17 C -0.130 4.130 18 C -0.230 4.230 19 C -0.132 4.132 20 C -0.133 4.133 21 C 0.060 3.940 22 C -0.112 4.112 23 H 0.260 0.740 24 H 0.013 0.987 25 H 0.016 0.984 26 H 0.050 0.950 27 H 0.062 0.938 28 H 0.071 0.929 29 H 0.025 0.975 30 H 0.068 0.932 31 H 0.031 0.969 32 H 0.072 0.928 33 H 0.095 0.905 34 H 0.093 0.907 35 H 0.095 0.905 36 H 0.093 0.907 37 H 0.093 0.907 38 H 0.094 0.906 39 H 0.027 0.973 40 H 0.064 0.936 41 H 0.059 0.941 42 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.110 -17.657 -4.807 20.907 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.145 4.145 3 Si 0.717 3.283 4 H -0.214 1.214 5 H -0.204 1.204 6 H -0.203 1.203 7 C -0.553 4.553 8 H 0.072 0.928 9 C -0.009 4.009 10 C -0.100 4.100 11 C -0.138 4.138 12 C -0.071 4.071 13 N -0.260 5.260 14 C -0.041 4.041 15 C -0.104 4.104 16 H 0.132 0.868 17 C -0.167 4.167 18 C -0.231 4.231 19 C -0.168 4.168 20 C -0.169 4.169 21 C -0.068 4.068 22 C -0.149 4.149 23 H 0.069 0.931 24 H 0.032 0.968 25 H 0.035 0.965 26 H 0.069 0.931 27 H 0.081 0.919 28 H 0.090 0.910 29 H 0.043 0.957 30 H 0.086 0.914 31 H 0.049 0.951 32 H 0.091 0.909 33 H 0.113 0.887 34 H 0.111 0.889 35 H 0.113 0.887 36 H 0.112 0.888 37 H 0.111 0.889 38 H 0.113 0.887 39 H 0.045 0.955 40 H 0.082 0.918 41 H 0.078 0.922 42 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 9.605 -17.537 -5.172 20.653 hybrid contribution 1.087 0.969 0.659 1.598 sum 10.693 -16.568 -4.514 20.229 Atomic orbital electron populations 1.69959 1.06020 1.26532 1.51118 1.25020 0.94799 0.99103 0.95569 0.86715 0.79617 0.83453 0.78544 1.21380 1.20364 1.20280 1.21231 0.92888 0.91075 1.50096 0.92774 1.19110 0.93622 0.91040 0.97080 1.21238 0.97887 0.94751 0.96170 1.21551 0.97866 0.95579 0.98774 1.22205 0.95183 0.89843 0.99838 1.61915 1.27917 1.01745 1.34424 1.21586 0.95067 0.93950 0.93525 1.22100 0.93085 0.97041 0.98173 0.86760 1.22859 0.95581 0.95561 1.02680 1.21538 1.08346 0.86719 1.06480 1.22626 1.02729 0.99672 0.91807 1.22600 1.02431 0.94426 0.97477 1.22089 0.96276 0.99375 0.89039 1.21690 0.97531 0.94273 1.01446 0.93063 0.96826 0.96515 0.93124 0.91911 0.91000 0.95692 0.91356 0.95057 0.90931 0.88678 0.88863 0.88662 0.88847 0.88898 0.88716 0.95514 0.91751 0.92186 0.91598 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.22 13.29 55.43 0.74 -26.48 16 2 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 3 Si 0.89 21.82 29.54 -169.99 -5.02 16.80 16 4 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 5 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 6 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 7 C -0.51 -14.51 8.45 -34.44 -0.29 -14.80 16 8 H 0.05 1.48 7.08 -52.49 -0.37 1.11 16 9 C 0.03 0.74 4.45 -27.89 -0.12 0.61 16 10 C -0.08 -1.70 2.20 -90.49 -0.20 -1.90 16 11 C -0.10 -1.91 5.15 -26.65 -0.14 -2.05 16 12 C 0.06 0.90 5.31 -3.84 -0.02 0.88 16 13 N -0.54 -7.99 4.66 -234.68 -1.09 -9.08 16 14 C 0.09 1.08 5.24 -3.83 -0.02 1.06 16 15 C -0.09 -0.99 4.70 -90.62 -0.43 -1.42 16 16 H 0.11 1.44 8.14 -51.93 -0.42 1.02 16 17 C -0.13 -1.35 10.18 -26.73 -0.27 -1.62 16 18 C -0.23 -2.37 5.39 -154.52 -0.83 -3.20 16 19 C -0.13 -1.14 10.53 -26.74 -0.28 -1.42 16 20 C -0.13 -1.15 10.53 -26.73 -0.28 -1.43 16 21 C 0.06 0.90 5.46 -3.83 -0.02 0.88 16 22 C -0.11 -1.98 5.38 -26.65 -0.14 -2.12 16 23 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 24 H 0.01 0.37 8.14 -51.92 -0.42 -0.05 16 25 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 26 H 0.05 1.08 8.14 -51.93 -0.42 0.65 16 27 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 28 H 0.07 1.46 7.05 -51.93 -0.37 1.09 16 29 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 30 H 0.07 1.00 7.10 -51.93 -0.37 0.63 16 31 H 0.03 0.39 7.86 -51.93 -0.41 -0.02 16 32 H 0.07 0.86 7.99 -51.93 -0.41 0.45 16 33 H 0.09 0.92 8.14 -51.93 -0.42 0.50 16 34 H 0.09 0.94 8.03 -51.93 -0.42 0.52 16 35 H 0.10 0.78 8.14 -51.93 -0.42 0.36 16 36 H 0.09 0.71 8.14 -51.93 -0.42 0.29 16 37 H 0.09 0.72 8.14 -51.93 -0.42 0.29 16 38 H 0.09 0.77 8.14 -51.93 -0.42 0.35 16 39 H 0.03 0.40 8.14 -51.93 -0.42 -0.02 16 40 H 0.06 0.86 8.01 -51.93 -0.42 0.45 16 41 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 42 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 LS Contribution 332.65 15.07 5.01 5.01 Total: -1.00 -29.64 332.65 -11.33 -40.96 By element: Atomic # 1 Polarization: 5.62 SS G_CDS: -7.82 Total: -2.19 kcal Atomic # 6 Polarization: -21.87 SS G_CDS: -3.15 Total: -25.02 kcal Atomic # 7 Polarization: -35.21 SS G_CDS: -0.36 Total: -35.56 kcal Atomic # 14 Polarization: 21.82 SS G_CDS: -5.02 Total: 16.80 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -29.64 -11.33 -40.96 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000722886945.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.403 kcal (2) G-P(sol) polarization free energy of solvation -29.636 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.767 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.328 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.965 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.438 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds