Wall clock time and date at job start Mon Mar 30 2020 06:52:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 120.00321 * 2 1 4 4 H 1.48506 * 109.46985 * 359.97438 * 3 2 1 5 5 H 1.48494 * 109.47276 * 119.99911 * 3 2 1 6 6 H 1.48498 * 109.47150 * 240.00121 * 3 2 1 7 7 C 1.37885 * 119.99913 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99535 * 179.97438 * 7 2 1 9 9 C 1.50694 * 119.99902 * 359.97438 * 7 2 1 10 10 C 1.53001 * 109.47168 * 180.02562 * 9 7 2 11 11 C 1.53120 * 109.52075 * 294.68273 * 10 9 7 12 12 C 1.53037 * 109.27874 * 182.43963 * 11 10 9 13 13 N 1.46845 * 109.52442 * 59.17687 * 12 11 10 14 14 C 1.46896 * 111.00223 * 174.16047 * 13 12 11 15 15 C 1.52997 * 109.47171 * 294.21305 * 14 13 12 16 16 H 1.08997 * 115.55456 * 330.66902 * 15 14 13 17 17 C 1.53007 * 117.50049 * 116.37891 * 15 14 13 18 18 C 1.52996 * 59.99966 * 107.49009 * 17 15 14 19 19 C 1.52988 * 138.58777 * 130.89512 * 18 17 15 20 20 C 1.52995 * 138.58921 * 229.11002 * 18 17 15 21 21 C 1.46844 * 111.20208 * 298.26223 * 13 12 11 22 22 C 1.53041 * 109.52628 * 61.73711 * 21 13 12 23 23 H 0.97001 * 119.99646 * 359.97438 * 1 2 3 24 24 H 1.09007 * 109.47443 * 300.00164 * 9 7 2 25 25 H 1.09003 * 109.47615 * 60.00205 * 9 7 2 26 26 H 1.09003 * 109.52123 * 54.87505 * 10 9 7 27 27 H 1.08998 * 109.50255 * 302.37724 * 11 10 9 28 28 H 1.09001 * 109.50298 * 62.50125 * 11 10 9 29 29 H 1.09002 * 109.46395 * 299.16507 * 12 11 10 30 30 H 1.08991 * 109.46453 * 179.19693 * 12 11 10 31 31 H 1.08998 * 109.47157 * 54.21548 * 14 13 12 32 32 H 1.09003 * 109.47026 * 174.21336 * 14 13 12 33 33 H 1.08996 * 117.49924 * 214.98041 * 17 15 14 34 34 H 1.08997 * 117.49465 * 359.97438 * 17 15 14 35 35 H 1.09003 * 117.49635 * 238.38030 * 19 18 17 36 36 H 1.08995 * 117.50427 * 23.40505 * 19 18 17 37 37 H 1.08997 * 117.49598 * 336.59621 * 20 18 17 38 38 H 1.09004 * 117.49951 * 121.61618 * 20 18 17 39 39 H 1.09002 * 109.46321 * 301.72556 * 21 13 12 40 40 H 1.08996 * 109.46867 * 181.75874 * 21 13 12 41 41 H 1.08998 * 109.50738 * 180.88412 * 22 21 13 42 42 H 1.09003 * 109.50108 * 60.76177 * 22 21 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 1.2842 2.7465 -0.0006 5 1 3.1030 1.6963 1.2125 6 1 3.1030 1.6963 -1.2125 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 6 2.2453 -3.6621 -0.0005 11 6 3.0358 -3.6594 -1.3119 12 6 3.9851 -4.8596 -1.3321 13 7 3.2097 -6.1007 -1.2096 14 6 4.0736 -7.2786 -1.3641 15 6 4.6223 -7.3250 -2.7915 16 1 3.9843 -6.8804 -3.5552 17 6 6.1362 -7.1939 -2.9712 18 6 5.4542 -8.5460 -3.1893 19 6 5.4268 -9.6616 -4.2359 20 6 5.6316 -10.0033 -2.7586 21 6 2.4792 -6.1471 0.0634 22 6 1.4850 -4.9853 0.1253 23 1 -0.4850 0.8401 0.0004 24 1 0.6247 -2.5571 0.8897 25 1 0.6240 -2.5568 -0.8903 26 1 2.9312 -3.5549 0.8397 27 1 2.3458 -3.7271 -2.1529 28 1 3.6129 -2.7378 -1.3870 29 1 4.6837 -4.7843 -0.4987 30 1 4.5392 -4.8687 -2.2706 31 1 4.9019 -7.2168 -0.6583 32 1 3.4954 -8.1816 -1.1676 33 1 6.4942 -6.6627 -3.8530 34 1 6.7410 -7.0741 -2.0724 35 1 4.4634 -9.9104 -4.6811 36 1 6.2881 -9.7523 -4.8975 37 1 6.6278 -10.3187 -2.4485 38 1 4.8030 -10.4769 -2.2320 39 1 3.1848 -6.0656 0.8902 40 1 1.9397 -7.0912 0.1384 41 1 0.9541 -5.0109 1.0769 42 1 0.7706 -5.0737 -0.6932 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000722886945.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:52:56 Heat of formation + Delta-G solvation = 23.181730 kcal Electronic energy + Delta-G solvation = -18163.144158 eV Core-core repulsion = 15529.272479 eV Total energy + Delta-G solvation = -2633.871679 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 249.179 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.33363 -38.99164 -36.17417 -34.47226 -33.19196 -31.67124 -30.01083 -27.17698 -25.04232 -23.98084 -23.26548 -22.36757 -21.68993 -20.43382 -19.72101 -18.41365 -17.11377 -16.51265 -16.11593 -15.80839 -15.65759 -15.39001 -15.08817 -14.87523 -14.46646 -14.03650 -13.81092 -13.51283 -13.17375 -12.94040 -12.64631 -12.50526 -12.42498 -12.29548 -12.14557 -12.07453 -11.95676 -11.65275 -11.26792 -10.98529 -10.79158 -10.78607 -10.70288 -10.57880 -10.50517 -9.21575 -8.16642 -6.26451 1.39667 1.42694 1.50326 2.42323 2.66438 2.80556 3.03823 3.16291 3.45243 3.90390 3.97066 4.05829 4.07724 4.11744 4.31174 4.44221 4.50810 4.58868 4.63672 4.68636 4.74758 4.77956 4.82312 4.84057 4.86147 4.88194 4.96899 5.01255 5.03293 5.11941 5.17324 5.28893 5.33561 5.38889 5.42458 5.46649 5.58308 5.81872 5.90096 6.19496 6.25650 6.32012 6.89589 7.41818 8.95195 Molecular weight = 249.18amu Principal moments of inertia in cm(-1) A = 0.040540 B = 0.003944 C = 0.003716 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 690.514001 B = 7098.422483 C = 7532.206500 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C -0.003 4.003 3 Si 0.961 3.039 4 H -0.285 1.285 5 H -0.267 1.267 6 H -0.266 1.266 7 C -0.531 4.531 8 H 0.060 0.940 9 C 0.034 3.966 10 C -0.075 4.075 11 C -0.094 4.094 12 C 0.070 3.930 13 N -0.546 5.546 14 C 0.093 3.907 15 C -0.098 4.098 16 H 0.100 0.900 17 C -0.128 4.128 18 C -0.243 4.243 19 C -0.129 4.129 20 C -0.126 4.126 21 C 0.067 3.933 22 C -0.107 4.107 23 H 0.262 0.738 24 H -0.015 1.015 25 H -0.013 1.013 26 H 0.047 0.953 27 H 0.047 0.953 28 H 0.056 0.944 29 H 0.028 0.972 30 H 0.082 0.918 31 H 0.036 0.964 32 H 0.081 0.919 33 H 0.099 0.901 34 H 0.097 0.903 35 H 0.098 0.902 36 H 0.104 0.896 37 H 0.104 0.896 38 H 0.100 0.900 39 H 0.032 0.968 40 H 0.088 0.912 41 H 0.062 0.938 42 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.108 -18.874 -4.978 22.970 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.577 5.577 2 C -0.200 4.200 3 Si 0.786 3.214 4 H -0.210 1.210 5 H -0.192 1.192 6 H -0.191 1.191 7 C -0.569 4.569 8 H 0.078 0.922 9 C -0.003 4.003 10 C -0.094 4.094 11 C -0.132 4.132 12 C -0.058 4.058 13 N -0.270 5.270 14 C -0.034 4.034 15 C -0.117 4.117 16 H 0.118 0.882 17 C -0.164 4.164 18 C -0.243 4.243 19 C -0.165 4.165 20 C -0.163 4.163 21 C -0.061 4.061 22 C -0.145 4.145 23 H 0.071 0.929 24 H 0.004 0.996 25 H 0.005 0.995 26 H 0.066 0.934 27 H 0.066 0.934 28 H 0.074 0.926 29 H 0.047 0.953 30 H 0.101 0.899 31 H 0.054 0.946 32 H 0.099 0.901 33 H 0.117 0.883 34 H 0.115 0.885 35 H 0.116 0.884 36 H 0.123 0.877 37 H 0.122 0.878 38 H 0.118 0.882 39 H 0.051 0.949 40 H 0.106 0.894 41 H 0.081 0.919 42 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 11.618 -18.773 -5.345 22.716 hybrid contribution 0.413 1.313 0.694 1.542 sum 12.032 -17.460 -4.651 21.708 Atomic orbital electron populations 1.70103 1.07820 1.27627 1.52124 1.25971 0.95705 1.03251 0.95046 0.85564 0.78316 0.78396 0.79173 1.21010 1.19231 1.19130 1.21636 0.93390 0.92160 1.49740 0.92157 1.18999 0.93988 0.93055 0.94217 1.21096 0.96931 0.94362 0.97021 1.21426 0.97854 0.96861 0.97089 1.22008 0.94202 0.88840 1.00763 1.61874 1.28614 1.02210 1.34349 1.21573 0.94808 0.92841 0.94182 1.21949 0.93616 0.98842 0.97261 0.88216 1.22878 0.94594 0.95923 1.03030 1.21666 1.07056 0.87186 1.08435 1.22755 1.03421 0.98283 0.92088 1.22729 1.03297 0.92826 0.97443 1.22014 0.95834 0.98851 0.89401 1.21600 0.97837 0.93870 1.01175 0.92934 0.99629 0.99451 0.93441 0.93388 0.92571 0.95335 0.89942 0.94631 0.90074 0.88254 0.88515 0.88366 0.87745 0.87782 0.88200 0.94929 0.89388 0.91932 0.92697 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -58.27 13.29 21.45 0.28 -57.98 16 2 C 0.00 -0.15 5.46 84.66 0.46 0.31 16 3 Si 0.96 44.98 29.54 68.60 2.03 47.00 16 4 H -0.28 -13.08 7.11 99.48 0.71 -12.37 16 5 H -0.27 -12.00 7.11 99.48 0.71 -11.29 16 6 H -0.27 -11.94 7.11 99.48 0.71 -11.23 16 7 C -0.53 -30.61 8.45 25.60 0.22 -30.39 16 8 H 0.06 3.32 7.08 -2.91 -0.02 3.30 16 9 C 0.03 1.87 4.45 29.85 0.13 2.00 16 10 C -0.08 -3.19 2.20 -10.71 -0.02 -3.22 16 11 C -0.09 -3.65 5.15 30.65 0.16 -3.49 16 12 C 0.07 2.12 5.31 86.33 0.46 2.57 16 13 N -0.55 -15.37 4.66 -896.39 -4.17 -19.55 16 14 C 0.09 2.11 5.24 86.30 0.45 2.56 16 15 C -0.10 -2.10 4.70 -10.79 -0.05 -2.15 16 16 H 0.10 2.43 8.14 -2.39 -0.02 2.41 16 17 C -0.13 -2.39 10.18 30.60 0.31 -2.08 16 18 C -0.24 -4.45 5.39 -52.19 -0.28 -4.73 16 19 C -0.13 -1.91 10.53 30.59 0.32 -1.59 16 20 C -0.13 -1.84 10.53 30.59 0.32 -1.51 16 21 C 0.07 1.88 5.46 86.33 0.47 2.36 16 22 C -0.11 -3.79 5.38 30.65 0.16 -3.63 16 23 H 0.26 15.36 8.31 -92.71 -0.77 14.59 16 24 H -0.01 -0.86 8.14 -2.38 -0.02 -0.88 16 25 H -0.01 -0.77 8.14 -2.39 -0.02 -0.78 16 26 H 0.05 2.03 8.14 -2.39 -0.02 2.01 16 27 H 0.05 1.97 8.14 -2.39 -0.02 1.95 16 28 H 0.06 2.31 7.05 -2.39 -0.02 2.29 16 29 H 0.03 0.86 8.14 -2.39 -0.02 0.84 16 30 H 0.08 2.29 7.10 -2.39 -0.02 2.27 16 31 H 0.04 0.79 7.86 -2.39 -0.02 0.77 16 32 H 0.08 1.70 7.99 -2.39 -0.02 1.68 16 33 H 0.10 1.74 8.14 -2.39 -0.02 1.72 16 34 H 0.10 1.73 8.03 -2.39 -0.02 1.71 16 35 H 0.10 1.40 8.14 -2.39 -0.02 1.38 16 36 H 0.10 1.32 8.14 -2.39 -0.02 1.30 16 37 H 0.10 1.28 8.14 -2.39 -0.02 1.27 16 38 H 0.10 1.35 8.14 -2.39 -0.02 1.33 16 39 H 0.03 0.90 8.14 -2.39 -0.02 0.88 16 40 H 0.09 2.12 8.01 -2.39 -0.02 2.10 16 41 H 0.06 2.16 8.14 -2.39 -0.02 2.14 16 42 H 0.05 2.05 8.14 -2.39 -0.02 2.03 16 Total: -1.00 -64.33 332.65 2.20 -62.12 By element: Atomic # 1 Polarization: 10.44 SS G_CDS: 0.95 Total: 11.39 kcal Atomic # 6 Polarization: -46.11 SS G_CDS: 3.12 Total: -42.99 kcal Atomic # 7 Polarization: -73.64 SS G_CDS: -3.89 Total: -77.53 kcal Atomic # 14 Polarization: 44.98 SS G_CDS: 2.03 Total: 47.00 kcal Total: -64.33 2.20 -62.12 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000722886945.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.307 kcal (2) G-P(sol) polarization free energy of solvation -64.326 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.981 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.201 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.125 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.182 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds