Wall clock time and date at job start Mon Mar 30 2020 06:52:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 120.00017 * 2 1 4 4 H 1.48501 * 109.47057 * 359.97438 * 3 2 1 5 5 H 1.48500 * 109.47389 * 119.99828 * 3 2 1 6 6 H 1.48504 * 109.47102 * 240.00177 * 3 2 1 7 7 C 1.37871 * 120.00217 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00140 * 180.02562 * 7 2 1 9 9 C 1.50706 * 120.00102 * 0.02562 * 7 2 1 10 10 C 1.52998 * 109.47348 * 179.97438 * 9 7 2 11 11 C 1.53120 * 109.52242 * 294.68548 * 10 9 7 12 12 C 1.53042 * 109.27553 * 182.44001 * 11 10 9 13 13 N 1.46850 * 109.52311 * 59.17745 * 12 11 10 14 14 C 1.46893 * 110.99844 * 174.15962 * 13 12 11 15 15 C 1.53001 * 109.47345 * 294.21000 * 14 13 12 16 16 H 1.09000 * 115.55138 * 29.41253 * 15 14 13 17 17 C 1.53009 * 117.49925 * 243.74987 * 15 14 13 18 18 C 1.52993 * 117.50118 * 175.08873 * 15 14 13 19 19 C 1.52986 * 138.59015 * 336.60002 * 18 15 14 20 20 C 1.52989 * 138.58720 * 238.38134 * 18 15 14 21 21 C 1.46846 * 111.19879 * 298.25802 * 13 12 11 22 22 C 1.53038 * 109.52436 * 61.73851 * 21 13 12 23 23 H 0.97001 * 119.99646 * 179.97438 * 1 2 3 24 24 H 1.09001 * 109.46564 * 300.00328 * 9 7 2 25 25 H 1.09006 * 109.46863 * 59.99666 * 9 7 2 26 26 H 1.09003 * 109.52106 * 54.87407 * 10 9 7 27 27 H 1.09004 * 109.49932 * 302.37913 * 11 10 9 28 28 H 1.08997 * 109.50642 * 62.50100 * 11 10 9 29 29 H 1.08993 * 109.46368 * 299.15955 * 12 11 10 30 30 H 1.09002 * 109.45932 * 179.18793 * 12 11 10 31 31 H 1.08995 * 109.47599 * 54.20998 * 14 13 12 32 32 H 1.08998 * 109.47102 * 174.20986 * 14 13 12 33 33 H 1.09003 * 117.49595 * 359.97438 * 17 15 14 34 34 H 1.09001 * 117.49943 * 145.01959 * 17 15 14 35 35 H 1.09007 * 117.49793 * 336.58841 * 19 18 15 36 36 H 1.08997 * 117.50647 * 121.61878 * 19 18 15 37 37 H 1.09006 * 117.49739 * 238.37978 * 20 18 15 38 38 H 1.08993 * 117.50253 * 23.40054 * 20 18 15 39 39 H 1.08997 * 109.45919 * 301.72996 * 21 13 12 40 40 H 1.08996 * 109.45451 * 181.75197 * 21 13 12 41 41 H 1.09004 * 109.50382 * 180.87570 * 22 21 13 42 42 H 1.09004 * 109.53119 * 60.78401 * 22 21 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 1.2842 2.7465 -0.0006 5 1 3.1029 1.6965 1.2125 6 1 3.1029 1.6964 -1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4992 0.0005 10 6 2.2454 -3.6621 0.0005 11 6 3.0360 -3.6593 -1.3107 12 6 3.9853 -4.8596 -1.3308 13 7 3.2099 -6.1006 -1.2085 14 6 4.0739 -7.2785 -1.3628 15 6 4.6227 -7.3250 -2.7903 16 1 4.7471 -6.3581 -3.2778 17 6 4.2127 -8.5104 -3.6666 18 6 5.6399 -8.4189 -3.1208 19 6 6.6480 -9.3073 -2.3893 20 6 7.0754 -8.5326 -3.6375 21 6 2.4794 -6.1470 0.0646 22 6 1.4852 -4.9852 0.1264 23 1 -0.4850 -0.8401 -0.0004 24 1 0.6241 -2.5566 0.8903 25 1 0.6247 -2.5571 -0.8897 26 1 2.9313 -3.5548 0.8408 27 1 2.3459 -3.7269 -2.1518 28 1 3.6130 -2.7377 -1.3859 29 1 4.6838 -4.7841 -0.4976 30 1 4.5394 -4.8686 -2.2695 31 1 4.9021 -7.2167 -0.6571 32 1 3.4958 -8.1814 -1.1663 33 1 3.5523 -9.2573 -3.2260 34 1 4.0678 -8.3233 -4.7306 35 1 7.0221 -8.9572 -1.4272 36 1 6.5288 -10.3866 -2.4831 37 1 7.2373 -9.1024 -4.5526 38 1 7.7306 -7.6730 -3.4967 39 1 3.1850 -6.0655 0.8913 40 1 1.9398 -7.0911 0.1393 41 1 0.9541 -5.0108 1.0780 42 1 0.7703 -5.0734 -0.6917 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000722886947.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:52:58 Heat of formation + Delta-G solvation = 35.922486 kcal Electronic energy + Delta-G solvation = -18186.176863 eV Core-core repulsion = 15552.857664 eV Total energy + Delta-G solvation = -2633.319199 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 249.179 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -39.24781 -38.03381 -34.80422 -33.04462 -31.88359 -30.42181 -28.09775 -25.42000 -23.26793 -22.86904 -22.58858 -21.22318 -20.50883 -19.07762 -18.88267 -16.62086 -16.07519 -15.24399 -15.01125 -14.87532 -14.41619 -13.75587 -13.58556 -13.49140 -13.30986 -12.74958 -12.50959 -12.02165 -11.78241 -11.52967 -11.46542 -11.35536 -11.04086 -10.86085 -10.68720 -10.59916 -10.15469 -10.09431 -10.04072 -9.89206 -9.80555 -9.60453 -9.24121 -8.40359 -8.26161 -8.08070 -6.29019 -3.97039 3.43607 3.46548 3.48583 3.51788 3.67147 3.97924 4.32022 4.59408 4.62592 4.70121 5.19216 5.27462 5.28276 5.36000 5.37356 5.44676 5.46052 5.51088 5.52285 5.62412 5.66660 5.68683 5.72803 5.77012 5.86169 5.88868 5.94879 6.08329 6.14366 6.25775 6.39647 6.53460 6.61948 6.92359 7.02887 7.10163 7.32903 7.37033 7.48339 7.65990 8.30615 8.53635 8.96315 9.74683 11.11498 Molecular weight = 249.18amu Principal moments of inertia in cm(-1) A = 0.036197 B = 0.004012 C = 0.003773 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 773.361054 B = 6978.201431 C = 7420.312422 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C 0.013 3.987 3 Si 1.066 2.934 4 H -0.283 1.283 5 H -0.289 1.289 6 H -0.288 1.288 7 C -0.595 4.595 8 H 0.048 0.952 9 C 0.015 3.985 10 C -0.075 4.075 11 C -0.099 4.099 12 C 0.054 3.946 13 N -0.534 5.534 14 C 0.087 3.913 15 C -0.089 4.089 16 H 0.111 0.889 17 C -0.120 4.120 18 C -0.234 4.234 19 C -0.132 4.132 20 C -0.132 4.132 21 C 0.061 3.939 22 C -0.113 4.113 23 H 0.268 0.732 24 H 0.004 0.996 25 H 0.007 0.993 26 H 0.052 0.948 27 H 0.062 0.938 28 H 0.073 0.927 29 H 0.026 0.974 30 H 0.068 0.932 31 H 0.032 0.968 32 H 0.072 0.928 33 H 0.095 0.905 34 H 0.094 0.906 35 H 0.093 0.907 36 H 0.093 0.907 37 H 0.094 0.906 38 H 0.094 0.906 39 H 0.027 0.973 40 H 0.065 0.935 41 H 0.059 0.941 42 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.866 -17.795 -4.725 21.379 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.553 5.553 2 C -0.191 4.191 3 Si 0.895 3.105 4 H -0.209 1.209 5 H -0.216 1.216 6 H -0.215 1.215 7 C -0.633 4.633 8 H 0.066 0.934 9 C -0.022 4.022 10 C -0.093 4.093 11 C -0.136 4.136 12 C -0.073 4.073 13 N -0.259 5.259 14 C -0.041 4.041 15 C -0.107 4.107 16 H 0.129 0.871 17 C -0.157 4.157 18 C -0.235 4.235 19 C -0.169 4.169 20 C -0.169 4.169 21 C -0.067 4.067 22 C -0.151 4.151 23 H 0.079 0.921 24 H 0.022 0.978 25 H 0.026 0.974 26 H 0.070 0.930 27 H 0.080 0.920 28 H 0.091 0.909 29 H 0.044 0.956 30 H 0.086 0.914 31 H 0.050 0.950 32 H 0.091 0.909 33 H 0.113 0.887 34 H 0.113 0.887 35 H 0.112 0.888 36 H 0.112 0.888 37 H 0.112 0.888 38 H 0.113 0.887 39 H 0.045 0.955 40 H 0.084 0.916 41 H 0.078 0.922 42 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 10.321 -16.148 -5.091 19.829 hybrid contribution 0.851 -1.707 0.656 2.017 sum 11.172 -17.855 -4.435 21.524 Atomic orbital electron populations 1.70774 1.06899 1.30565 1.47024 1.25806 0.96584 1.02636 0.94048 0.83584 0.74913 0.75594 0.76418 1.20850 1.21577 1.21502 1.22056 0.94146 0.92029 1.55115 0.93386 1.19243 0.94279 0.92909 0.95778 1.21097 0.97628 0.94192 0.96417 1.21533 0.97872 0.95666 0.98565 1.22247 0.95302 0.89939 0.99838 1.61900 1.27981 1.01673 1.34359 1.21589 0.94798 0.93966 0.93750 1.22115 0.98228 0.93889 0.96451 0.87120 1.22796 0.93107 1.00337 0.99471 1.21596 0.88889 1.05113 1.07875 1.22593 1.00580 0.97316 0.96398 1.22626 0.94171 1.02196 0.97879 1.22073 0.96243 0.99301 0.89069 1.21705 0.97607 0.94374 1.01375 0.92125 0.97751 0.97434 0.92984 0.91966 0.90872 0.95565 0.91380 0.94966 0.90923 0.88690 0.88728 0.88828 0.88813 0.88774 0.88744 0.95456 0.91619 0.92235 0.91630 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -28.55 13.65 55.43 0.76 -27.80 16 2 C 0.01 0.37 5.46 -17.82 -0.10 0.27 16 3 Si 1.07 25.66 29.90 -169.99 -5.08 20.58 16 4 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 5 H -0.29 -6.65 7.11 56.52 0.40 -6.24 16 6 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16 7 C -0.60 -17.01 8.44 -34.44 -0.29 -17.30 16 8 H 0.05 1.35 7.08 -52.48 -0.37 0.97 16 9 C 0.01 0.38 3.76 -27.88 -0.10 0.28 16 10 C -0.07 -1.57 2.20 -90.50 -0.20 -1.77 16 11 C -0.10 -1.91 5.15 -26.65 -0.14 -2.05 16 12 C 0.05 0.87 5.31 -3.83 -0.02 0.85 16 13 N -0.53 -8.00 4.66 -234.68 -1.09 -9.09 16 14 C 0.09 1.09 5.24 -3.83 -0.02 1.07 16 15 C -0.09 -1.03 5.66 -90.62 -0.51 -1.55 16 16 H 0.11 1.39 6.33 -51.93 -0.33 1.07 16 17 C -0.12 -1.23 10.18 -26.69 -0.27 -1.51 16 18 C -0.23 -2.42 5.40 -154.49 -0.83 -3.25 16 19 C -0.13 -1.16 10.53 -26.74 -0.28 -1.44 16 20 C -0.13 -1.16 10.53 -26.74 -0.28 -1.44 16 21 C 0.06 0.92 5.46 -3.83 -0.02 0.90 16 22 C -0.11 -2.00 5.38 -26.65 -0.14 -2.15 16 23 H 0.27 8.35 7.22 -40.82 -0.29 8.05 16 24 H 0.00 0.12 8.01 -51.93 -0.42 -0.30 16 25 H 0.01 0.20 8.01 -51.93 -0.42 -0.21 16 26 H 0.05 1.13 8.14 -51.93 -0.42 0.71 16 27 H 0.06 1.26 8.14 -51.93 -0.42 0.83 16 28 H 0.07 1.52 7.05 -51.93 -0.37 1.15 16 29 H 0.03 0.42 8.14 -51.93 -0.42 0.00 16 30 H 0.07 1.00 6.15 -51.93 -0.32 0.68 16 31 H 0.03 0.41 8.12 -51.93 -0.42 -0.01 16 32 H 0.07 0.85 7.72 -51.93 -0.40 0.45 16 33 H 0.09 0.91 8.03 -51.93 -0.42 0.49 16 34 H 0.09 0.90 8.14 -51.93 -0.42 0.48 16 35 H 0.09 0.80 8.14 -51.92 -0.42 0.38 16 36 H 0.09 0.72 8.14 -51.93 -0.42 0.29 16 37 H 0.09 0.72 8.14 -51.93 -0.42 0.30 16 38 H 0.09 0.80 8.14 -51.93 -0.42 0.38 16 39 H 0.03 0.41 8.14 -51.93 -0.42 -0.01 16 40 H 0.07 0.87 8.01 -51.93 -0.42 0.46 16 41 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 42 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 LS Contribution 329.55 15.07 4.97 4.97 Total: -1.00 -30.50 329.55 -11.28 -41.78 By element: Atomic # 1 Polarization: 6.27 SS G_CDS: -7.61 Total: -1.35 kcal Atomic # 6 Polarization: -25.87 SS G_CDS: -3.22 Total: -29.09 kcal Atomic # 7 Polarization: -36.56 SS G_CDS: -0.34 Total: -36.89 kcal Atomic # 14 Polarization: 25.66 SS G_CDS: -5.08 Total: 20.58 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -30.50 -11.28 -41.78 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000722886947.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.707 kcal (2) G-P(sol) polarization free energy of solvation -30.501 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.206 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.284 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.785 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.922 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds