Wall clock time and date at job start Mon Mar 30 2020 06:52:58
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31516 * 1
3 3 Si 1.86800 * 120.00017 * 2 1
4 4 H 1.48501 * 109.47057 * 359.97438 * 3 2 1
5 5 H 1.48500 * 109.47389 * 119.99828 * 3 2 1
6 6 H 1.48504 * 109.47102 * 240.00177 * 3 2 1
7 7 C 1.37871 * 120.00217 * 179.97438 * 2 1 3
8 8 H 1.08005 * 120.00140 * 180.02562 * 7 2 1
9 9 C 1.50706 * 120.00102 * 0.02562 * 7 2 1
10 10 C 1.52998 * 109.47348 * 179.97438 * 9 7 2
11 11 C 1.53120 * 109.52242 * 294.68548 * 10 9 7
12 12 C 1.53042 * 109.27553 * 182.44001 * 11 10 9
13 13 N 1.46850 * 109.52311 * 59.17745 * 12 11 10
14 14 C 1.46893 * 110.99844 * 174.15962 * 13 12 11
15 15 C 1.53001 * 109.47345 * 294.21000 * 14 13 12
16 16 H 1.09000 * 115.55138 * 29.41253 * 15 14 13
17 17 C 1.53009 * 117.49925 * 243.74987 * 15 14 13
18 18 C 1.52993 * 117.50118 * 175.08873 * 15 14 13
19 19 C 1.52986 * 138.59015 * 336.60002 * 18 15 14
20 20 C 1.52989 * 138.58720 * 238.38134 * 18 15 14
21 21 C 1.46846 * 111.19879 * 298.25802 * 13 12 11
22 22 C 1.53038 * 109.52436 * 61.73851 * 21 13 12
23 23 H 0.97001 * 119.99646 * 179.97438 * 1 2 3
24 24 H 1.09001 * 109.46564 * 300.00328 * 9 7 2
25 25 H 1.09006 * 109.46863 * 59.99666 * 9 7 2
26 26 H 1.09003 * 109.52106 * 54.87407 * 10 9 7
27 27 H 1.09004 * 109.49932 * 302.37913 * 11 10 9
28 28 H 1.08997 * 109.50642 * 62.50100 * 11 10 9
29 29 H 1.08993 * 109.46368 * 299.15955 * 12 11 10
30 30 H 1.09002 * 109.45932 * 179.18793 * 12 11 10
31 31 H 1.08995 * 109.47599 * 54.20998 * 14 13 12
32 32 H 1.08998 * 109.47102 * 174.20986 * 14 13 12
33 33 H 1.09003 * 117.49595 * 359.97438 * 17 15 14
34 34 H 1.09001 * 117.49943 * 145.01959 * 17 15 14
35 35 H 1.09007 * 117.49793 * 336.58841 * 19 18 15
36 36 H 1.08997 * 117.50647 * 121.61878 * 19 18 15
37 37 H 1.09006 * 117.49739 * 238.37978 * 20 18 15
38 38 H 1.08993 * 117.50253 * 23.40054 * 20 18 15
39 39 H 1.08997 * 109.45919 * 301.72996 * 21 13 12
40 40 H 1.08996 * 109.45451 * 181.75197 * 21 13 12
41 41 H 1.09004 * 109.50382 * 180.87570 * 22 21 13
42 42 H 1.09004 * 109.53119 * 60.78401 * 22 21 13
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3152 0.0000 0.0000
3 14 2.2492 1.6177 0.0000
4 1 1.2842 2.7465 -0.0006
5 1 3.1029 1.6965 1.2125
6 1 3.1029 1.6964 -1.2125
7 6 2.0046 -1.1940 0.0005
8 1 3.0846 -1.1940 0.0010
9 6 1.2511 -2.4992 0.0005
10 6 2.2454 -3.6621 0.0005
11 6 3.0360 -3.6593 -1.3107
12 6 3.9853 -4.8596 -1.3308
13 7 3.2099 -6.1006 -1.2085
14 6 4.0739 -7.2785 -1.3628
15 6 4.6227 -7.3250 -2.7903
16 1 4.7471 -6.3581 -3.2778
17 6 4.2127 -8.5104 -3.6666
18 6 5.6399 -8.4189 -3.1208
19 6 6.6480 -9.3073 -2.3893
20 6 7.0754 -8.5326 -3.6375
21 6 2.4794 -6.1470 0.0646
22 6 1.4852 -4.9852 0.1264
23 1 -0.4850 -0.8401 -0.0004
24 1 0.6241 -2.5566 0.8903
25 1 0.6247 -2.5571 -0.8897
26 1 2.9313 -3.5548 0.8408
27 1 2.3459 -3.7269 -2.1518
28 1 3.6130 -2.7377 -1.3859
29 1 4.6838 -4.7841 -0.4976
30 1 4.5394 -4.8686 -2.2695
31 1 4.9021 -7.2167 -0.6571
32 1 3.4958 -8.1814 -1.1663
33 1 3.5523 -9.2573 -3.2260
34 1 4.0678 -8.3233 -4.7306
35 1 7.0221 -8.9572 -1.4272
36 1 6.5288 -10.3866 -2.4831
37 1 7.2373 -9.1024 -4.5526
38 1 7.7306 -7.6730 -3.4967
39 1 3.1850 -6.0655 0.8913
40 1 1.9398 -7.0911 0.1393
41 1 0.9541 -5.0108 1.0780
42 1 0.7703 -5.0734 -0.6917
RHF calculation, no. of doubly occupied orbitals= 48
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000722886947.mol2 42
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 06:52:58
Heat of formation + Delta-G solvation = 35.922486 kcal
Electronic energy + Delta-G solvation = -18186.176863 eV
Core-core repulsion = 15552.857664 eV
Total energy + Delta-G solvation = -2633.319199 eV
No. of doubly occupied orbitals = 48
Molecular weight
(most abundant/longest-lived isotopes) = 249.179 amu
Computer time = 0.38 seconds
Orbital eigenvalues (eV)
-39.24781 -38.03381 -34.80422 -33.04462 -31.88359 -30.42181 -28.09775 -25.42000
-23.26793 -22.86904 -22.58858 -21.22318 -20.50883 -19.07762 -18.88267 -16.62086
-16.07519 -15.24399 -15.01125 -14.87532 -14.41619 -13.75587 -13.58556 -13.49140
-13.30986 -12.74958 -12.50959 -12.02165 -11.78241 -11.52967 -11.46542 -11.35536
-11.04086 -10.86085 -10.68720 -10.59916 -10.15469 -10.09431 -10.04072 -9.89206
-9.80555 -9.60453 -9.24121 -8.40359 -8.26161 -8.08070 -6.29019 -3.97039
3.43607 3.46548 3.48583 3.51788 3.67147 3.97924 4.32022 4.59408
4.62592 4.70121 5.19216 5.27462 5.28276 5.36000 5.37356 5.44676
5.46052 5.51088 5.52285 5.62412 5.66660 5.68683 5.72803 5.77012
5.86169 5.88868 5.94879 6.08329 6.14366 6.25775 6.39647 6.53460
6.61948 6.92359 7.02887 7.10163 7.32903 7.37033 7.48339 7.65990
8.30615 8.53635 8.96315 9.74683 11.11498
Molecular weight = 249.18amu
Principal moments of inertia in cm(-1)
A = 0.036197 B = 0.004012 C = 0.003773
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 773.361054 B = 6978.201431 C = 7420.312422
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.916 5.916
2 C 0.013 3.987
3 Si 1.066 2.934
4 H -0.283 1.283
5 H -0.289 1.289
6 H -0.288 1.288
7 C -0.595 4.595
8 H 0.048 0.952
9 C 0.015 3.985
10 C -0.075 4.075
11 C -0.099 4.099
12 C 0.054 3.946
13 N -0.534 5.534
14 C 0.087 3.913
15 C -0.089 4.089
16 H 0.111 0.889
17 C -0.120 4.120
18 C -0.234 4.234
19 C -0.132 4.132
20 C -0.132 4.132
21 C 0.061 3.939
22 C -0.113 4.113
23 H 0.268 0.732
24 H 0.004 0.996
25 H 0.007 0.993
26 H 0.052 0.948
27 H 0.062 0.938
28 H 0.073 0.927
29 H 0.026 0.974
30 H 0.068 0.932
31 H 0.032 0.968
32 H 0.072 0.928
33 H 0.095 0.905
34 H 0.094 0.906
35 H 0.093 0.907
36 H 0.093 0.907
37 H 0.094 0.906
38 H 0.094 0.906
39 H 0.027 0.973
40 H 0.065 0.935
41 H 0.059 0.941
42 H 0.065 0.935
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 10.866 -17.795 -4.725 21.379
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.553 5.553
2 C -0.191 4.191
3 Si 0.895 3.105
4 H -0.209 1.209
5 H -0.216 1.216
6 H -0.215 1.215
7 C -0.633 4.633
8 H 0.066 0.934
9 C -0.022 4.022
10 C -0.093 4.093
11 C -0.136 4.136
12 C -0.073 4.073
13 N -0.259 5.259
14 C -0.041 4.041
15 C -0.107 4.107
16 H 0.129 0.871
17 C -0.157 4.157
18 C -0.235 4.235
19 C -0.169 4.169
20 C -0.169 4.169
21 C -0.067 4.067
22 C -0.151 4.151
23 H 0.079 0.921
24 H 0.022 0.978
25 H 0.026 0.974
26 H 0.070 0.930
27 H 0.080 0.920
28 H 0.091 0.909
29 H 0.044 0.956
30 H 0.086 0.914
31 H 0.050 0.950
32 H 0.091 0.909
33 H 0.113 0.887
34 H 0.113 0.887
35 H 0.112 0.888
36 H 0.112 0.888
37 H 0.112 0.888
38 H 0.113 0.887
39 H 0.045 0.955
40 H 0.084 0.916
41 H 0.078 0.922
42 H 0.084 0.916
Dipole moment (debyes) X Y Z Total
from point charges 10.321 -16.148 -5.091 19.829
hybrid contribution 0.851 -1.707 0.656 2.017
sum 11.172 -17.855 -4.435 21.524
Atomic orbital electron populations
1.70774 1.06899 1.30565 1.47024 1.25806 0.96584 1.02636 0.94048
0.83584 0.74913 0.75594 0.76418 1.20850 1.21577 1.21502 1.22056
0.94146 0.92029 1.55115 0.93386 1.19243 0.94279 0.92909 0.95778
1.21097 0.97628 0.94192 0.96417 1.21533 0.97872 0.95666 0.98565
1.22247 0.95302 0.89939 0.99838 1.61900 1.27981 1.01673 1.34359
1.21589 0.94798 0.93966 0.93750 1.22115 0.98228 0.93889 0.96451
0.87120 1.22796 0.93107 1.00337 0.99471 1.21596 0.88889 1.05113
1.07875 1.22593 1.00580 0.97316 0.96398 1.22626 0.94171 1.02196
0.97879 1.22073 0.96243 0.99301 0.89069 1.21705 0.97607 0.94374
1.01375 0.92125 0.97751 0.97434 0.92984 0.91966 0.90872 0.95565
0.91380 0.94966 0.90923 0.88690 0.88728 0.88828 0.88813 0.88774
0.88744 0.95456 0.91619 0.92235 0.91630
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.92 -28.55 13.65 55.43 0.76 -27.80 16
2 C 0.01 0.37 5.46 -17.82 -0.10 0.27 16
3 Si 1.07 25.66 29.90 -169.99 -5.08 20.58 16
4 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16
5 H -0.29 -6.65 7.11 56.52 0.40 -6.24 16
6 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16
7 C -0.60 -17.01 8.44 -34.44 -0.29 -17.30 16
8 H 0.05 1.35 7.08 -52.48 -0.37 0.97 16
9 C 0.01 0.38 3.76 -27.88 -0.10 0.28 16
10 C -0.07 -1.57 2.20 -90.50 -0.20 -1.77 16
11 C -0.10 -1.91 5.15 -26.65 -0.14 -2.05 16
12 C 0.05 0.87 5.31 -3.83 -0.02 0.85 16
13 N -0.53 -8.00 4.66 -234.68 -1.09 -9.09 16
14 C 0.09 1.09 5.24 -3.83 -0.02 1.07 16
15 C -0.09 -1.03 5.66 -90.62 -0.51 -1.55 16
16 H 0.11 1.39 6.33 -51.93 -0.33 1.07 16
17 C -0.12 -1.23 10.18 -26.69 -0.27 -1.51 16
18 C -0.23 -2.42 5.40 -154.49 -0.83 -3.25 16
19 C -0.13 -1.16 10.53 -26.74 -0.28 -1.44 16
20 C -0.13 -1.16 10.53 -26.74 -0.28 -1.44 16
21 C 0.06 0.92 5.46 -3.83 -0.02 0.90 16
22 C -0.11 -2.00 5.38 -26.65 -0.14 -2.15 16
23 H 0.27 8.35 7.22 -40.82 -0.29 8.05 16
24 H 0.00 0.12 8.01 -51.93 -0.42 -0.30 16
25 H 0.01 0.20 8.01 -51.93 -0.42 -0.21 16
26 H 0.05 1.13 8.14 -51.93 -0.42 0.71 16
27 H 0.06 1.26 8.14 -51.93 -0.42 0.83 16
28 H 0.07 1.52 7.05 -51.93 -0.37 1.15 16
29 H 0.03 0.42 8.14 -51.93 -0.42 0.00 16
30 H 0.07 1.00 6.15 -51.93 -0.32 0.68 16
31 H 0.03 0.41 8.12 -51.93 -0.42 -0.01 16
32 H 0.07 0.85 7.72 -51.93 -0.40 0.45 16
33 H 0.09 0.91 8.03 -51.93 -0.42 0.49 16
34 H 0.09 0.90 8.14 -51.93 -0.42 0.48 16
35 H 0.09 0.80 8.14 -51.92 -0.42 0.38 16
36 H 0.09 0.72 8.14 -51.93 -0.42 0.29 16
37 H 0.09 0.72 8.14 -51.93 -0.42 0.30 16
38 H 0.09 0.80 8.14 -51.93 -0.42 0.38 16
39 H 0.03 0.41 8.14 -51.93 -0.42 -0.01 16
40 H 0.07 0.87 8.01 -51.93 -0.42 0.46 16
41 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16
42 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16
LS Contribution 329.55 15.07 4.97 4.97
Total: -1.00 -30.50 329.55 -11.28 -41.78
By element:
Atomic # 1 Polarization: 6.27 SS G_CDS: -7.61 Total: -1.35 kcal
Atomic # 6 Polarization: -25.87 SS G_CDS: -3.22 Total: -29.09 kcal
Atomic # 7 Polarization: -36.56 SS G_CDS: -0.34 Total: -36.89 kcal
Atomic # 14 Polarization: 25.66 SS G_CDS: -5.08 Total: 20.58 kcal
Total LS contribution 4.97 Total: 4.97 kcal
Total: -30.50 -11.28 -41.78 kcal
The number of atoms in the molecule is 42
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000722886947.mol2 42
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 77.707 kcal
(2) G-P(sol) polarization free energy of solvation -30.501 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.206 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.284 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.785 kcal
(6) G-S(sol) free energy of system = (1) + (5) 35.922 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.38 seconds