Wall clock time and date at job start Mon Mar 30 2020 06:52:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 120.00017 * 2 1 4 4 H 1.48501 * 109.47057 * 359.97438 * 3 2 1 5 5 H 1.48500 * 109.47389 * 119.99828 * 3 2 1 6 6 H 1.48504 * 109.47102 * 240.00177 * 3 2 1 7 7 C 1.37871 * 120.00217 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00140 * 180.02562 * 7 2 1 9 9 C 1.50706 * 120.00102 * 0.02562 * 7 2 1 10 10 C 1.52998 * 109.47348 * 179.97438 * 9 7 2 11 11 C 1.53120 * 109.52242 * 294.68548 * 10 9 7 12 12 C 1.53042 * 109.27553 * 182.44001 * 11 10 9 13 13 N 1.46850 * 109.52311 * 59.17745 * 12 11 10 14 14 C 1.46893 * 110.99844 * 174.15962 * 13 12 11 15 15 C 1.53001 * 109.47345 * 294.21000 * 14 13 12 16 16 H 1.09000 * 115.55138 * 29.41253 * 15 14 13 17 17 C 1.53009 * 117.49925 * 243.74987 * 15 14 13 18 18 C 1.52993 * 117.50118 * 175.08873 * 15 14 13 19 19 C 1.52986 * 138.59015 * 336.60002 * 18 15 14 20 20 C 1.52989 * 138.58720 * 238.38134 * 18 15 14 21 21 C 1.46846 * 111.19879 * 298.25802 * 13 12 11 22 22 C 1.53038 * 109.52436 * 61.73851 * 21 13 12 23 23 H 0.97001 * 119.99646 * 179.97438 * 1 2 3 24 24 H 1.09001 * 109.46564 * 300.00328 * 9 7 2 25 25 H 1.09006 * 109.46863 * 59.99666 * 9 7 2 26 26 H 1.09003 * 109.52106 * 54.87407 * 10 9 7 27 27 H 1.09004 * 109.49932 * 302.37913 * 11 10 9 28 28 H 1.08997 * 109.50642 * 62.50100 * 11 10 9 29 29 H 1.08993 * 109.46368 * 299.15955 * 12 11 10 30 30 H 1.09002 * 109.45932 * 179.18793 * 12 11 10 31 31 H 1.08995 * 109.47599 * 54.20998 * 14 13 12 32 32 H 1.08998 * 109.47102 * 174.20986 * 14 13 12 33 33 H 1.09003 * 117.49595 * 359.97438 * 17 15 14 34 34 H 1.09001 * 117.49943 * 145.01959 * 17 15 14 35 35 H 1.09007 * 117.49793 * 336.58841 * 19 18 15 36 36 H 1.08997 * 117.50647 * 121.61878 * 19 18 15 37 37 H 1.09006 * 117.49739 * 238.37978 * 20 18 15 38 38 H 1.08993 * 117.50253 * 23.40054 * 20 18 15 39 39 H 1.08997 * 109.45919 * 301.72996 * 21 13 12 40 40 H 1.08996 * 109.45451 * 181.75197 * 21 13 12 41 41 H 1.09004 * 109.50382 * 180.87570 * 22 21 13 42 42 H 1.09004 * 109.53119 * 60.78401 * 22 21 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 1.2842 2.7465 -0.0006 5 1 3.1029 1.6965 1.2125 6 1 3.1029 1.6964 -1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4992 0.0005 10 6 2.2454 -3.6621 0.0005 11 6 3.0360 -3.6593 -1.3107 12 6 3.9853 -4.8596 -1.3308 13 7 3.2099 -6.1006 -1.2085 14 6 4.0739 -7.2785 -1.3628 15 6 4.6227 -7.3250 -2.7903 16 1 4.7471 -6.3581 -3.2778 17 6 4.2127 -8.5104 -3.6666 18 6 5.6399 -8.4189 -3.1208 19 6 6.6480 -9.3073 -2.3893 20 6 7.0754 -8.5326 -3.6375 21 6 2.4794 -6.1470 0.0646 22 6 1.4852 -4.9852 0.1264 23 1 -0.4850 -0.8401 -0.0004 24 1 0.6241 -2.5566 0.8903 25 1 0.6247 -2.5571 -0.8897 26 1 2.9313 -3.5548 0.8408 27 1 2.3459 -3.7269 -2.1518 28 1 3.6130 -2.7377 -1.3859 29 1 4.6838 -4.7841 -0.4976 30 1 4.5394 -4.8686 -2.2695 31 1 4.9021 -7.2167 -0.6571 32 1 3.4958 -8.1814 -1.1663 33 1 3.5523 -9.2573 -3.2260 34 1 4.0678 -8.3233 -4.7306 35 1 7.0221 -8.9572 -1.4272 36 1 6.5288 -10.3866 -2.4831 37 1 7.2373 -9.1024 -4.5526 38 1 7.7306 -7.6730 -3.4967 39 1 3.1850 -6.0655 0.8913 40 1 1.9398 -7.0911 0.1393 41 1 0.9541 -5.0108 1.0780 42 1 0.7703 -5.0734 -0.6917 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000722886947.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:52:58 Heat of formation + Delta-G solvation = 19.838655 kcal Electronic energy + Delta-G solvation = -18186.874310 eV Core-core repulsion = 15552.857664 eV Total energy + Delta-G solvation = -2634.016646 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 249.179 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.40799 -39.05234 -36.42740 -34.60246 -33.19986 -31.81083 -29.75628 -26.92943 -25.07846 -24.21891 -23.27981 -22.71995 -21.57441 -20.55927 -19.75673 -18.83480 -17.21468 -16.14410 -15.98461 -15.79426 -15.67067 -15.54723 -15.37650 -15.00414 -14.68922 -14.20234 -13.86595 -13.44132 -13.24006 -12.95991 -12.68378 -12.47171 -12.40608 -12.24224 -12.16976 -12.13124 -11.95055 -11.50218 -11.37750 -11.05717 -10.88337 -10.77001 -10.64968 -10.52060 -10.47136 -9.26077 -8.66045 -6.35213 1.51332 1.60187 1.79128 2.57542 2.59210 2.78550 3.03658 3.18159 3.45829 3.77782 3.90643 3.96818 3.98622 4.02327 4.26087 4.39712 4.40441 4.54000 4.56568 4.59378 4.63662 4.70456 4.74698 4.79139 4.81929 4.86148 4.89346 4.93922 4.99455 5.01945 5.05439 5.16622 5.25415 5.27011 5.30867 5.33974 5.44752 5.65801 6.03676 6.12459 6.19859 6.21584 6.61277 7.46321 8.74545 Molecular weight = 249.18amu Principal moments of inertia in cm(-1) A = 0.036197 B = 0.004012 C = 0.003773 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 773.361054 B = 6978.201431 C = 7420.312422 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.942 5.942 2 C -0.043 4.043 3 Si 1.116 2.884 4 H -0.284 1.284 5 H -0.269 1.269 6 H -0.268 1.268 7 C -0.607 4.607 8 H 0.051 0.949 9 C 0.018 3.982 10 C -0.070 4.070 11 C -0.093 4.093 12 C 0.066 3.934 13 N -0.543 5.543 14 C 0.094 3.906 15 C -0.104 4.104 16 H 0.097 0.903 17 C -0.117 4.117 18 C -0.246 4.246 19 C -0.126 4.126 20 C -0.130 4.130 21 C 0.067 3.933 22 C -0.107 4.107 23 H 0.254 0.746 24 H -0.018 1.018 25 H -0.016 1.016 26 H 0.045 0.955 27 H 0.048 0.952 28 H 0.054 0.946 29 H 0.028 0.972 30 H 0.083 0.917 31 H 0.033 0.967 32 H 0.085 0.915 33 H 0.102 0.898 34 H 0.098 0.902 35 H 0.095 0.905 36 H 0.107 0.893 37 H 0.106 0.894 38 H 0.095 0.905 39 H 0.032 0.968 40 H 0.091 0.909 41 H 0.063 0.937 42 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.775 -19.258 -4.948 23.634 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.240 4.240 3 Si 0.937 3.063 4 H -0.210 1.210 5 H -0.194 1.194 6 H -0.194 1.194 7 C -0.644 4.644 8 H 0.069 0.931 9 C -0.019 4.019 10 C -0.088 4.088 11 C -0.131 4.131 12 C -0.061 4.061 13 N -0.268 5.268 14 C -0.034 4.034 15 C -0.123 4.123 16 H 0.115 0.885 17 C -0.153 4.153 18 C -0.246 4.246 19 C -0.163 4.163 20 C -0.167 4.167 21 C -0.061 4.061 22 C -0.145 4.145 23 H 0.063 0.937 24 H 0.001 0.999 25 H 0.002 0.998 26 H 0.064 0.936 27 H 0.067 0.933 28 H 0.073 0.927 29 H 0.046 0.954 30 H 0.101 0.899 31 H 0.051 0.949 32 H 0.103 0.897 33 H 0.121 0.879 34 H 0.116 0.884 35 H 0.114 0.886 36 H 0.125 0.875 37 H 0.124 0.876 38 H 0.114 0.886 39 H 0.050 0.950 40 H 0.109 0.891 41 H 0.081 0.919 42 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 12.243 -17.649 -5.314 22.127 hybrid contribution 0.237 -1.288 0.713 1.492 sum 12.480 -18.937 -4.601 23.141 Atomic orbital electron populations 1.70915 1.08026 1.29729 1.49303 1.27423 0.96627 1.06888 0.93018 0.82960 0.74145 0.71195 0.78012 1.20990 1.19437 1.19357 1.22455 0.94549 0.93222 1.54216 0.93061 1.19180 0.94690 0.94545 0.93491 1.20985 0.96695 0.94050 0.97098 1.21403 0.97856 0.96842 0.96969 1.22054 0.94316 0.89021 1.00756 1.61867 1.28603 1.02064 1.34294 1.21584 0.94483 0.92965 0.94339 1.22002 1.00144 0.93948 0.96186 0.88464 1.22840 0.93438 0.99528 0.99516 1.21716 0.89455 1.04613 1.08859 1.22710 0.99200 0.97905 0.96444 1.22753 0.92990 1.02394 0.98565 1.22013 0.95796 0.98885 0.89366 1.21612 0.97901 0.93770 1.01241 0.93692 0.99950 0.99755 0.93612 0.93347 0.92740 0.95397 0.89898 0.94871 0.89713 0.87948 0.88359 0.88623 0.87499 0.87571 0.88639 0.94991 0.89055 0.91872 0.92534 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -60.24 13.65 21.45 0.29 -59.94 16 2 C -0.04 -2.55 5.46 84.65 0.46 -2.09 16 3 Si 1.12 51.42 29.90 68.60 2.05 53.47 16 4 H -0.28 -13.11 7.11 99.48 0.71 -12.40 16 5 H -0.27 -11.48 7.11 99.48 0.71 -10.77 16 6 H -0.27 -11.43 7.11 99.48 0.71 -10.73 16 7 C -0.61 -35.38 8.44 25.60 0.22 -35.16 16 8 H 0.05 2.90 7.08 -2.91 -0.02 2.88 16 9 C 0.02 0.97 3.76 29.85 0.11 1.08 16 10 C -0.07 -2.97 2.20 -10.72 -0.02 -2.99 16 11 C -0.09 -3.64 5.15 30.65 0.16 -3.48 16 12 C 0.07 2.04 5.31 86.33 0.46 2.50 16 13 N -0.54 -15.30 4.66 -896.39 -4.17 -19.47 16 14 C 0.09 2.11 5.24 86.30 0.45 2.56 16 15 C -0.10 -2.24 5.66 -10.79 -0.06 -2.30 16 16 H 0.10 2.33 6.33 -2.39 -0.02 2.32 16 17 C -0.12 -2.14 10.18 30.62 0.31 -1.83 16 18 C -0.25 -4.49 5.40 -52.17 -0.28 -4.78 16 19 C -0.13 -1.86 10.53 30.59 0.32 -1.54 16 20 C -0.13 -1.97 10.53 30.59 0.32 -1.65 16 21 C 0.07 1.88 5.46 86.33 0.47 2.35 16 22 C -0.11 -3.78 5.38 30.64 0.16 -3.61 16 23 H 0.25 16.49 7.22 -92.71 -0.67 15.82 16 24 H -0.02 -1.02 8.01 -2.39 -0.02 -1.04 16 25 H -0.02 -0.92 8.01 -2.38 -0.02 -0.94 16 26 H 0.05 1.99 8.14 -2.39 -0.02 1.97 16 27 H 0.05 2.00 8.14 -2.39 -0.02 1.98 16 28 H 0.05 2.30 7.05 -2.39 -0.02 2.28 16 29 H 0.03 0.86 8.14 -2.39 -0.02 0.84 16 30 H 0.08 2.33 6.15 -2.39 -0.01 2.31 16 31 H 0.03 0.75 8.12 -2.39 -0.02 0.73 16 32 H 0.08 1.72 7.72 -2.39 -0.02 1.70 16 33 H 0.10 1.70 8.03 -2.39 -0.02 1.68 16 34 H 0.10 1.69 8.14 -2.39 -0.02 1.67 16 35 H 0.10 1.37 8.14 -2.38 -0.02 1.36 16 36 H 0.11 1.30 8.14 -2.39 -0.02 1.28 16 37 H 0.11 1.34 8.14 -2.38 -0.02 1.32 16 38 H 0.10 1.42 8.14 -2.39 -0.02 1.40 16 39 H 0.03 0.89 8.14 -2.39 -0.02 0.87 16 40 H 0.09 2.15 8.01 -2.39 -0.02 2.13 16 41 H 0.06 2.15 8.14 -2.38 -0.02 2.13 16 42 H 0.06 2.08 8.14 -2.39 -0.02 2.06 16 Total: -1.00 -66.34 329.55 2.31 -64.03 By element: Atomic # 1 Polarization: 11.78 SS G_CDS: 1.06 Total: 12.84 kcal Atomic # 6 Polarization: -54.01 SS G_CDS: 3.08 Total: -50.92 kcal Atomic # 7 Polarization: -75.53 SS G_CDS: -3.88 Total: -79.41 kcal Atomic # 14 Polarization: 51.42 SS G_CDS: 2.05 Total: 53.47 kcal Total: -66.34 2.31 -64.03 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000722886947.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.872 kcal (2) G-P(sol) polarization free energy of solvation -66.344 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.528 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.310 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.034 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.839 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds