Wall clock time and date at job start Mon Mar 30 2020 06:56:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30992 * 1 3 3 C 1.51275 * 120.85030 * 2 1 4 4 C 1.53229 * 108.53465 * 231.36363 * 3 2 1 5 5 C 1.52962 * 109.40816 * 305.37595 * 4 3 2 6 6 C 1.52998 * 109.41498 * 183.70708 * 5 4 3 7 7 N 1.46900 * 109.46913 * 175.54173 * 6 5 4 8 8 C 1.47909 * 110.99827 * 294.33126 * 7 6 5 9 9 C 1.53988 * 107.05523 * 214.15871 * 8 7 6 10 10 C 1.54591 * 105.14636 * 1.22666 * 9 8 7 11 11 H 1.09005 * 110.72760 * 263.42489 * 10 9 8 12 12 C 1.50700 * 110.72933 * 140.31305 * 10 9 8 13 13 H 1.07997 * 120.00042 * 241.45457 * 12 10 9 14 14 C 1.37873 * 119.99696 * 61.45261 * 12 10 9 15 15 N 1.31512 * 120.00249 * 0.02562 * 14 12 10 16 16 Si 1.86805 * 120.00111 * 179.97438 * 14 12 10 17 17 H 1.48502 * 109.46721 * 90.00334 * 16 14 12 18 18 H 1.48498 * 109.47043 * 210.00436 * 16 14 12 19 19 H 1.48504 * 109.46626 * 330.00465 * 16 14 12 20 20 C 1.48533 * 110.99719 * 176.94089 * 7 6 5 21 21 C 1.52958 * 109.81893 * 63.59512 * 5 4 3 22 22 C 1.51269 * 120.85035 * 180.02562 * 2 1 3 23 23 H 1.08008 * 120.00031 * 0.02562 * 1 2 3 24 24 H 1.07995 * 120.00113 * 180.02562 * 1 2 3 25 25 H 1.09001 * 109.62351 * 111.65293 * 3 2 1 26 26 H 1.08994 * 109.62285 * 351.07798 * 3 2 1 27 27 H 1.09001 * 109.48496 * 185.39063 * 4 3 2 28 28 H 1.09005 * 109.49365 * 65.35409 * 4 3 2 29 29 H 1.09010 * 109.40752 * 303.56398 * 5 4 3 30 30 H 1.08994 * 109.47223 * 55.53574 * 6 5 4 31 31 H 1.08995 * 109.46694 * 295.53610 * 6 5 4 32 32 H 1.09002 * 109.91590 * 94.80527 * 8 7 6 33 33 H 1.08999 * 109.91189 * 333.51311 * 8 7 6 34 34 H 1.09004 * 110.30870 * 120.14465 * 9 8 7 35 35 H 1.09000 * 110.30919 * 242.30551 * 9 8 7 36 36 H 0.97004 * 120.00784 * 179.97438 * 15 14 12 37 37 H 1.08996 * 110.67164 * 41.27978 * 20 7 6 38 38 H 1.09006 * 110.66398 * 278.14922 * 20 7 6 39 39 H 1.08995 * 109.48274 * 56.38479 * 21 5 4 40 40 H 1.08998 * 109.48139 * 176.43054 * 21 5 4 41 41 H 1.08998 * 109.63074 * 248.34705 * 22 2 1 42 42 H 1.09001 * 109.62533 * 8.91830 * 22 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0857 1.2987 0.0000 4 6 3.1142 1.2517 -1.1348 5 6 3.9804 0.0001 -0.9842 6 6 5.0662 0.0002 -2.0621 7 7 5.9632 -1.1442 -1.8537 8 6 6.7140 -1.0054 -0.5869 9 6 8.1053 -1.6242 -0.8164 10 6 8.1027 -2.0885 -2.2909 11 1 7.8562 -3.1480 -2.3613 12 6 9.4332 -1.8083 -2.9407 13 1 9.4903 -1.1424 -3.7891 14 6 10.5777 -2.4019 -2.4520 15 7 10.5081 -3.2131 -1.4192 16 14 12.2269 -2.0551 -3.2579 17 1 12.8578 -0.8785 -2.6076 18 1 13.1110 -3.2384 -3.1051 19 1 12.0227 -1.7727 -4.7014 20 6 6.9885 -1.2190 -2.9259 21 6 3.1141 -1.2515 -1.1352 22 6 2.0856 -1.2987 -0.0006 23 1 -0.5400 0.9354 -0.0004 24 1 -0.5400 -0.9353 0.0004 25 1 2.5986 1.4187 0.9543 26 1 1.4026 2.1330 -0.1592 27 1 3.7461 2.1388 -1.0898 28 1 2.5967 1.2223 -2.0938 29 1 4.4477 -0.0007 0.0007 30 1 5.6382 0.9260 -2.0016 31 1 4.6020 -0.0764 -3.0453 32 1 6.1974 -1.5386 0.2112 33 1 6.8144 0.0487 -0.3285 34 1 8.8827 -0.8771 -0.6564 35 1 8.2551 -2.4753 -0.1520 36 1 11.3132 -3.6311 -1.0756 37 1 7.3662 -0.2255 -3.1670 38 1 6.5819 -1.7031 -3.8139 39 1 2.5965 -1.2217 -2.0940 40 1 3.7460 -2.1385 -1.0903 41 1 2.5986 -1.4192 0.9535 42 1 1.4026 -2.1330 -0.1601 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000724582705.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:56:37 Heat of formation + Delta-G solvation = -8.182595 kcal Electronic energy + Delta-G solvation = -18542.008543 eV Core-core repulsion = 15906.776804 eV Total energy + Delta-G solvation = -2635.231739 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 249.179 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -39.11761 -37.51971 -33.98439 -32.49120 -31.02718 -30.06050 -28.14880 -26.93542 -24.38627 -23.03941 -22.79713 -20.72057 -19.75892 -19.16619 -18.28330 -16.30267 -15.16298 -14.93738 -14.87367 -14.83128 -14.33324 -14.03075 -13.62033 -13.17901 -13.03420 -12.38542 -12.31003 -12.18101 -11.97586 -11.52717 -11.41692 -11.06936 -11.04415 -10.92521 -10.70802 -10.54006 -10.30677 -10.25528 -10.04916 -10.01183 -9.61226 -9.17838 -9.03046 -8.74076 -8.37866 -7.67783 -6.00374 -4.03717 2.19721 3.30625 3.37557 3.40670 4.42171 4.55842 4.73112 4.76980 4.96136 5.13169 5.26345 5.33083 5.40091 5.48382 5.52294 5.60323 5.74527 5.79089 5.83625 5.90170 5.94070 5.98511 6.10561 6.11949 6.19010 6.28708 6.31978 6.41845 6.49769 6.55485 6.61211 6.70469 6.84947 6.89435 7.18409 7.21769 7.63589 7.70453 7.80057 7.91670 8.06373 8.47029 8.98858 9.60385 11.09310 Molecular weight = 249.18amu Principal moments of inertia in cm(-1) A = 0.057760 B = 0.004086 C = 0.004002 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 484.646496 B = 6851.483423 C = 6994.657067 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.109 4.109 3 C -0.086 4.086 4 C -0.111 4.111 5 C -0.082 4.082 6 C 0.052 3.948 7 N -0.519 5.519 8 C 0.035 3.965 9 C -0.102 4.102 10 C 0.053 3.947 11 H 0.036 0.964 12 C -0.516 4.516 13 H 0.055 0.945 14 C 0.063 3.937 15 N -0.887 5.887 16 Si 0.890 3.110 17 H -0.282 1.282 18 H -0.287 1.287 19 H -0.274 1.274 20 C 0.041 3.959 21 C -0.102 4.102 22 C -0.089 4.089 23 H 0.093 0.907 24 H 0.095 0.905 25 H 0.071 0.929 26 H 0.065 0.935 27 H 0.062 0.938 28 H 0.062 0.938 29 H 0.069 0.931 30 H 0.027 0.973 31 H 0.066 0.934 32 H 0.059 0.941 33 H 0.026 0.974 34 H 0.052 0.948 35 H 0.059 0.941 36 H 0.260 0.740 37 H 0.032 0.968 38 H 0.061 0.939 39 H 0.056 0.944 40 H 0.082 0.918 41 H 0.071 0.929 42 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.900 6.965 2.977 17.612 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.248 4.248 2 C -0.109 4.109 3 C -0.123 4.123 4 C -0.149 4.149 5 C -0.101 4.101 6 C -0.077 4.077 7 N -0.243 5.243 8 C -0.092 4.092 9 C -0.141 4.141 10 C 0.034 3.966 11 H 0.054 0.946 12 C -0.555 4.555 13 H 0.073 0.927 14 C -0.139 4.139 15 N -0.526 5.526 16 Si 0.718 3.282 17 H -0.208 1.208 18 H -0.212 1.212 19 H -0.199 1.199 20 C -0.086 4.086 21 C -0.139 4.139 22 C -0.126 4.126 23 H 0.111 0.889 24 H 0.113 0.887 25 H 0.090 0.910 26 H 0.083 0.917 27 H 0.080 0.920 28 H 0.081 0.919 29 H 0.088 0.912 30 H 0.046 0.954 31 H 0.084 0.916 32 H 0.078 0.922 33 H 0.044 0.956 34 H 0.071 0.929 35 H 0.078 0.922 36 H 0.069 0.931 37 H 0.051 0.949 38 H 0.080 0.920 39 H 0.075 0.925 40 H 0.101 0.899 41 H 0.089 0.911 42 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -16.115 6.384 3.091 17.607 hybrid contribution 1.402 1.004 -0.332 1.756 sum -14.713 7.388 2.758 16.693 Atomic orbital electron populations 1.23555 0.95036 1.01455 1.04721 1.22079 0.94988 0.96234 0.97646 1.20810 0.97547 0.94551 0.99366 1.21585 0.96938 0.98055 0.98321 1.21121 0.95107 0.94362 0.99483 1.22256 0.94512 0.92479 0.98435 1.64728 1.17810 1.38288 1.03442 1.22952 0.96177 0.97941 0.92174 1.22309 0.91832 0.99450 1.00473 1.19520 0.91622 0.94838 0.90633 0.94631 1.21109 0.91666 1.27801 1.14925 0.92696 1.24964 0.98944 0.94950 0.95005 1.69978 1.28492 1.30057 1.24026 0.86636 0.84029 0.77708 0.79863 1.20788 1.21238 1.19923 1.23355 0.92295 0.99215 0.93757 1.21476 0.96223 0.98995 0.97202 1.20881 0.97763 0.94108 0.99887 0.88863 0.88695 0.91033 0.91675 0.91977 0.91947 0.91217 0.95436 0.91580 0.92249 0.95598 0.92915 0.92213 0.93069 0.94930 0.92028 0.92514 0.89928 0.91070 0.91641 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -2.05 13.99 29.02 0.41 -1.64 16 2 C -0.11 -1.17 5.35 -100.50 -0.54 -1.71 16 3 C -0.09 -0.87 6.03 -27.48 -0.17 -1.03 16 4 C -0.11 -1.23 5.21 -26.63 -0.14 -1.37 16 5 C -0.08 -1.07 2.03 -90.66 -0.18 -1.26 16 6 C 0.05 0.81 4.13 -3.82 -0.02 0.79 16 7 N -0.52 -9.74 4.65 -230.45 -1.07 -10.81 16 8 C 0.04 0.69 5.52 -2.75 -0.02 0.67 16 9 C -0.10 -2.41 5.51 -25.38 -0.14 -2.55 16 10 C 0.05 1.34 2.99 -89.91 -0.27 1.07 16 11 H 0.04 0.98 8.14 -51.93 -0.42 0.56 16 12 C -0.52 -14.22 8.42 -34.44 -0.29 -14.51 16 13 H 0.05 1.49 7.78 -52.49 -0.41 1.08 16 14 C 0.06 1.76 5.33 -17.82 -0.10 1.66 16 15 N -0.89 -25.55 12.44 55.43 0.69 -24.86 16 16 Si 0.89 21.30 29.54 -169.99 -5.02 16.27 16 17 H -0.28 -6.69 7.11 56.52 0.40 -6.28 16 18 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 19 H -0.27 -6.48 7.11 56.52 0.40 -6.07 16 20 C 0.04 0.87 5.97 -1.90 -0.01 0.86 16 21 C -0.10 -1.30 5.14 -26.64 -0.14 -1.44 16 22 C -0.09 -1.00 6.03 -27.49 -0.17 -1.17 16 23 H 0.09 0.81 7.92 -52.48 -0.42 0.39 16 24 H 0.09 0.86 7.92 -52.49 -0.42 0.44 16 25 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 26 H 0.06 0.59 7.89 -51.93 -0.41 0.18 16 27 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 28 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 29 H 0.07 0.97 7.21 -51.92 -0.37 0.60 16 30 H 0.03 0.44 7.94 -51.93 -0.41 0.03 16 31 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 32 H 0.06 1.09 8.11 -51.93 -0.42 0.67 16 33 H 0.03 0.48 7.64 -51.93 -0.40 0.08 16 34 H 0.05 1.32 7.84 -51.93 -0.41 0.92 16 35 H 0.06 1.49 8.05 -51.93 -0.42 1.07 16 36 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16 37 H 0.03 0.70 7.92 -51.93 -0.41 0.29 16 38 H 0.06 1.27 8.14 -51.93 -0.42 0.85 16 39 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 40 H 0.08 1.21 7.62 -51.93 -0.40 0.82 16 41 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 42 H 0.06 0.69 7.89 -51.93 -0.41 0.28 16 LS Contribution 324.79 15.07 4.89 4.89 Total: -1.00 -27.75 324.79 -10.08 -37.83 By element: Atomic # 1 Polarization: 6.12 SS G_CDS: -7.81 Total: -1.70 kcal Atomic # 6 Polarization: -19.87 SS G_CDS: -1.76 Total: -21.63 kcal Atomic # 7 Polarization: -35.29 SS G_CDS: -0.38 Total: -35.67 kcal Atomic # 14 Polarization: 21.30 SS G_CDS: -5.02 Total: 16.27 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -27.75 -10.08 -37.83 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000724582705.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.648 kcal (2) G-P(sol) polarization free energy of solvation -27.751 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.897 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.080 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.831 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.183 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds