Wall clock time and date at job start Mon Mar 30 2020 06:56:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30992 * 1 3 3 C 1.51275 * 120.85030 * 2 1 4 4 C 1.53229 * 108.53465 * 231.36363 * 3 2 1 5 5 C 1.52962 * 109.40816 * 305.37595 * 4 3 2 6 6 C 1.52998 * 109.41498 * 183.70708 * 5 4 3 7 7 N 1.46900 * 109.46913 * 175.54173 * 6 5 4 8 8 C 1.47909 * 110.99827 * 294.33126 * 7 6 5 9 9 C 1.53988 * 107.05523 * 214.15871 * 8 7 6 10 10 C 1.54591 * 105.14636 * 1.22666 * 9 8 7 11 11 H 1.09005 * 110.72760 * 263.42489 * 10 9 8 12 12 C 1.50700 * 110.72933 * 140.31305 * 10 9 8 13 13 H 1.07997 * 120.00042 * 241.45457 * 12 10 9 14 14 C 1.37873 * 119.99696 * 61.45261 * 12 10 9 15 15 N 1.31512 * 120.00249 * 0.02562 * 14 12 10 16 16 Si 1.86805 * 120.00111 * 179.97438 * 14 12 10 17 17 H 1.48502 * 109.46721 * 90.00334 * 16 14 12 18 18 H 1.48498 * 109.47043 * 210.00436 * 16 14 12 19 19 H 1.48504 * 109.46626 * 330.00465 * 16 14 12 20 20 C 1.48533 * 110.99719 * 176.94089 * 7 6 5 21 21 C 1.52958 * 109.81893 * 63.59512 * 5 4 3 22 22 C 1.51269 * 120.85035 * 180.02562 * 2 1 3 23 23 H 1.08008 * 120.00031 * 0.02562 * 1 2 3 24 24 H 1.07995 * 120.00113 * 180.02562 * 1 2 3 25 25 H 1.09001 * 109.62351 * 111.65293 * 3 2 1 26 26 H 1.08994 * 109.62285 * 351.07798 * 3 2 1 27 27 H 1.09001 * 109.48496 * 185.39063 * 4 3 2 28 28 H 1.09005 * 109.49365 * 65.35409 * 4 3 2 29 29 H 1.09010 * 109.40752 * 303.56398 * 5 4 3 30 30 H 1.08994 * 109.47223 * 55.53574 * 6 5 4 31 31 H 1.08995 * 109.46694 * 295.53610 * 6 5 4 32 32 H 1.09002 * 109.91590 * 94.80527 * 8 7 6 33 33 H 1.08999 * 109.91189 * 333.51311 * 8 7 6 34 34 H 1.09004 * 110.30870 * 120.14465 * 9 8 7 35 35 H 1.09000 * 110.30919 * 242.30551 * 9 8 7 36 36 H 0.97004 * 120.00784 * 179.97438 * 15 14 12 37 37 H 1.08996 * 110.67164 * 41.27978 * 20 7 6 38 38 H 1.09006 * 110.66398 * 278.14922 * 20 7 6 39 39 H 1.08995 * 109.48274 * 56.38479 * 21 5 4 40 40 H 1.08998 * 109.48139 * 176.43054 * 21 5 4 41 41 H 1.08998 * 109.63074 * 248.34705 * 22 2 1 42 42 H 1.09001 * 109.62533 * 8.91830 * 22 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0857 1.2987 0.0000 4 6 3.1142 1.2517 -1.1348 5 6 3.9804 0.0001 -0.9842 6 6 5.0662 0.0002 -2.0621 7 7 5.9632 -1.1442 -1.8537 8 6 6.7140 -1.0054 -0.5869 9 6 8.1053 -1.6242 -0.8164 10 6 8.1027 -2.0885 -2.2909 11 1 7.8562 -3.1480 -2.3613 12 6 9.4332 -1.8083 -2.9407 13 1 9.4903 -1.1424 -3.7891 14 6 10.5777 -2.4019 -2.4520 15 7 10.5081 -3.2131 -1.4192 16 14 12.2269 -2.0551 -3.2579 17 1 12.8578 -0.8785 -2.6076 18 1 13.1110 -3.2384 -3.1051 19 1 12.0227 -1.7727 -4.7014 20 6 6.9885 -1.2190 -2.9259 21 6 3.1141 -1.2515 -1.1352 22 6 2.0856 -1.2987 -0.0006 23 1 -0.5400 0.9354 -0.0004 24 1 -0.5400 -0.9353 0.0004 25 1 2.5986 1.4187 0.9543 26 1 1.4026 2.1330 -0.1592 27 1 3.7461 2.1388 -1.0898 28 1 2.5967 1.2223 -2.0938 29 1 4.4477 -0.0007 0.0007 30 1 5.6382 0.9260 -2.0016 31 1 4.6020 -0.0764 -3.0453 32 1 6.1974 -1.5386 0.2112 33 1 6.8144 0.0487 -0.3285 34 1 8.8827 -0.8771 -0.6564 35 1 8.2551 -2.4753 -0.1520 36 1 11.3132 -3.6311 -1.0756 37 1 7.3662 -0.2255 -3.1670 38 1 6.5819 -1.7031 -3.8139 39 1 2.5965 -1.2217 -2.0940 40 1 3.7460 -2.1385 -1.0903 41 1 2.5986 -1.4192 0.9535 42 1 1.4026 -2.1330 -0.1601 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000724582705.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:56:36 Heat of formation + Delta-G solvation = -22.162464 kcal Electronic energy + Delta-G solvation = -18542.614755 eV Core-core repulsion = 15906.776804 eV Total energy + Delta-G solvation = -2635.837951 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 249.179 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.32960 -38.89079 -35.48926 -34.09843 -31.93730 -31.60692 -29.95715 -28.18405 -26.20876 -24.25020 -23.79944 -22.01878 -21.51672 -20.63365 -19.17129 -18.34961 -16.77366 -16.66016 -16.06062 -15.83823 -15.66526 -15.24979 -14.66169 -14.50646 -14.36918 -14.00938 -13.68161 -13.49554 -13.11257 -13.02454 -12.84000 -12.70627 -12.60636 -12.33060 -12.19569 -11.94753 -11.80989 -11.58861 -11.51495 -11.23108 -11.00427 -10.88974 -10.80887 -10.50212 -9.83851 -9.21768 -8.13685 -6.24511 1.40887 1.41552 1.43139 1.52102 2.42193 3.16343 3.22459 3.80063 3.85666 3.90457 4.13360 4.22295 4.31892 4.35569 4.46379 4.53328 4.57671 4.60591 4.64651 4.68567 4.77115 4.87149 4.89787 4.99889 5.03162 5.09768 5.10157 5.12821 5.25000 5.27567 5.30429 5.36938 5.48073 5.55206 5.61176 5.81437 5.84777 5.88034 6.04382 6.06735 6.33129 6.41203 6.85683 7.43419 8.95627 Molecular weight = 249.18amu Principal moments of inertia in cm(-1) A = 0.057760 B = 0.004086 C = 0.004002 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 484.646496 B = 6851.483423 C = 6994.657067 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.128 4.128 3 C -0.083 4.083 4 C -0.106 4.106 5 C -0.076 4.076 6 C 0.052 3.948 7 N -0.520 5.520 8 C 0.049 3.951 9 C -0.093 4.093 10 C 0.043 3.957 11 H 0.001 0.999 12 C -0.536 4.536 13 H 0.054 0.946 14 C 0.013 3.987 15 N -0.918 5.918 16 Si 0.956 3.044 17 H -0.275 1.275 18 H -0.284 1.284 19 H -0.267 1.267 20 C 0.053 3.947 21 C -0.098 4.098 22 C -0.086 4.086 23 H 0.106 0.894 24 H 0.100 0.900 25 H 0.071 0.929 26 H 0.080 0.920 27 H 0.068 0.932 28 H 0.065 0.935 29 H 0.062 0.938 30 H 0.029 0.971 31 H 0.074 0.926 32 H 0.073 0.927 33 H 0.040 0.960 34 H 0.031 0.969 35 H 0.036 0.964 36 H 0.261 0.739 37 H 0.031 0.969 38 H 0.067 0.933 39 H 0.057 0.943 40 H 0.059 0.941 41 H 0.067 0.933 42 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.171 8.499 2.765 19.357 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C -0.128 4.128 3 C -0.120 4.120 4 C -0.144 4.144 5 C -0.094 4.094 6 C -0.076 4.076 7 N -0.243 5.243 8 C -0.079 4.079 9 C -0.132 4.132 10 C 0.024 3.976 11 H 0.019 0.981 12 C -0.574 4.574 13 H 0.073 0.927 14 C -0.186 4.186 15 N -0.557 5.557 16 Si 0.782 3.218 17 H -0.201 1.201 18 H -0.209 1.209 19 H -0.191 1.191 20 C -0.074 4.074 21 C -0.135 4.135 22 C -0.123 4.123 23 H 0.125 0.875 24 H 0.118 0.882 25 H 0.090 0.910 26 H 0.099 0.901 27 H 0.087 0.913 28 H 0.084 0.916 29 H 0.080 0.920 30 H 0.047 0.953 31 H 0.092 0.908 32 H 0.091 0.909 33 H 0.058 0.942 34 H 0.050 0.950 35 H 0.055 0.945 36 H 0.070 0.930 37 H 0.050 0.950 38 H 0.086 0.914 39 H 0.075 0.925 40 H 0.078 0.922 41 H 0.086 0.914 42 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -17.403 7.928 2.876 19.339 hybrid contribution 1.745 0.489 -0.268 1.832 sum -15.658 8.417 2.608 17.968 Atomic orbital electron populations 1.23748 0.94775 1.02411 1.02850 1.22096 0.95406 0.95982 0.99275 1.20803 0.97453 0.94837 0.98889 1.21534 0.96925 0.96909 0.99012 1.21065 0.94656 0.95721 0.97997 1.22365 0.94377 0.90960 0.99907 1.64723 1.17012 1.40446 1.02167 1.22795 0.93706 0.98464 0.92961 1.22092 0.93960 0.98108 0.99038 1.19479 0.92424 0.93621 0.92105 0.98067 1.21456 0.92977 1.27852 1.15110 0.92729 1.25774 1.02605 0.94716 0.95531 1.70106 1.29430 1.30891 1.25237 0.85587 0.79482 0.77632 0.79148 1.20110 1.20914 1.19127 1.23114 0.91706 0.98178 0.94407 1.21395 0.96269 0.97842 0.98010 1.20827 0.97502 0.95071 0.98948 0.87541 0.88170 0.91004 0.90131 0.91343 0.91624 0.91972 0.95326 0.90774 0.90892 0.94196 0.94993 0.94537 0.93037 0.95043 0.91439 0.92460 0.92222 0.91432 0.91058 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -3.33 13.99 67.79 0.95 -2.39 16 2 C -0.13 -2.42 5.35 -16.12 -0.09 -2.51 16 3 C -0.08 -1.45 6.03 30.11 0.18 -1.27 16 4 C -0.11 -2.07 5.21 30.66 0.16 -1.91 16 5 C -0.08 -1.85 2.03 -10.82 -0.02 -1.87 16 6 C 0.05 1.53 4.13 86.30 0.36 1.88 16 7 N -0.52 -19.19 4.65 -883.01 -4.10 -23.29 16 8 C 0.05 1.87 5.52 86.44 0.48 2.35 16 9 C -0.09 -4.53 5.51 31.47 0.17 -4.36 16 10 C 0.04 2.22 2.99 -10.33 -0.03 2.19 16 11 H 0.00 0.07 8.14 -2.38 -0.02 0.05 16 12 C -0.54 -30.02 8.42 25.60 0.22 -29.81 16 13 H 0.05 2.99 7.78 -2.91 -0.02 2.96 16 14 C 0.01 0.72 5.33 84.65 0.45 1.17 16 15 N -0.92 -54.12 12.44 21.45 0.27 -53.86 16 16 Si 0.96 43.95 29.54 68.60 2.03 45.98 16 17 H -0.28 -12.32 7.11 99.48 0.71 -11.61 16 18 H -0.28 -12.81 7.11 99.48 0.71 -12.11 16 19 H -0.27 -11.85 7.11 99.48 0.71 -11.14 16 20 C 0.05 2.28 5.97 86.65 0.52 2.80 16 21 C -0.10 -2.38 5.14 30.65 0.16 -2.23 16 22 C -0.09 -1.81 6.03 30.10 0.18 -1.63 16 23 H 0.11 1.48 7.92 -2.91 -0.02 1.46 16 24 H 0.10 1.54 7.92 -2.91 -0.02 1.51 16 25 H 0.07 1.26 8.14 -2.39 -0.02 1.24 16 26 H 0.08 1.18 7.89 -2.39 -0.02 1.16 16 27 H 0.07 1.26 8.14 -2.39 -0.02 1.24 16 28 H 0.07 1.26 8.14 -2.38 -0.02 1.24 16 29 H 0.06 1.63 7.21 -2.38 -0.02 1.61 16 30 H 0.03 0.85 7.94 -2.39 -0.02 0.83 16 31 H 0.07 2.07 8.14 -2.39 -0.02 2.05 16 32 H 0.07 2.62 8.11 -2.39 -0.02 2.60 16 33 H 0.04 1.43 7.64 -2.39 -0.02 1.41 16 34 H 0.03 1.64 7.84 -2.39 -0.02 1.62 16 35 H 0.04 1.89 8.05 -2.39 -0.02 1.87 16 36 H 0.26 14.60 8.31 -92.71 -0.77 13.83 16 37 H 0.03 1.34 7.92 -2.39 -0.02 1.32 16 38 H 0.07 2.77 8.14 -2.38 -0.02 2.75 16 39 H 0.06 1.38 8.14 -2.39 -0.02 1.36 16 40 H 0.06 1.72 7.62 -2.39 -0.02 1.71 16 41 H 0.07 1.45 8.14 -2.39 -0.02 1.43 16 42 H 0.07 1.39 7.89 -2.39 -0.02 1.37 16 Total: -1.00 -59.78 324.79 2.81 -56.97 By element: Atomic # 1 Polarization: 10.81 SS G_CDS: 0.94 Total: 11.75 kcal Atomic # 6 Polarization: -41.24 SS G_CDS: 3.68 Total: -37.56 kcal Atomic # 7 Polarization: -73.31 SS G_CDS: -3.83 Total: -77.14 kcal Atomic # 14 Polarization: 43.95 SS G_CDS: 2.03 Total: 45.98 kcal Total: -59.78 2.81 -56.97 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000724582705.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.810 kcal (2) G-P(sol) polarization free energy of solvation -59.785 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.975 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.812 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.972 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.162 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds