Wall clock time and date at job start Mon Mar 30 2020 06:56:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31008 * 1 3 3 C 1.51262 * 120.85270 * 2 1 4 4 C 1.53225 * 108.53898 * 231.32780 * 3 2 1 5 5 C 1.52961 * 109.40426 * 305.37284 * 4 3 2 6 6 C 1.52995 * 109.41644 * 183.70186 * 5 4 3 7 7 N 1.46904 * 109.47391 * 174.85621 * 6 5 4 8 8 C 1.48535 * 111.00151 * 287.40290 * 7 6 5 9 9 C 1.55103 * 103.28338 * 200.33129 * 8 7 6 10 10 C 1.54597 * 102.84580 * 37.30378 * 9 8 7 11 11 H 1.09000 * 110.31032 * 97.11750 * 10 9 8 12 12 C 1.50698 * 110.30463 * 219.18773 * 10 9 8 13 13 H 1.08005 * 119.99819 * 117.21101 * 12 10 9 14 14 C 1.37875 * 120.00046 * 297.20442 * 12 10 9 15 15 N 1.31511 * 120.00192 * 0.02562 * 14 12 10 16 16 Si 1.86798 * 119.99979 * 180.02562 * 14 12 10 17 17 H 1.48506 * 109.47297 * 180.02562 * 16 14 12 18 18 H 1.48503 * 109.47261 * 60.00310 * 16 14 12 19 19 H 1.48500 * 109.47454 * 300.00304 * 16 14 12 20 20 C 1.47897 * 110.99941 * 170.00152 * 7 6 5 21 21 C 1.52959 * 109.76005 * 63.62956 * 5 4 3 22 22 C 1.51272 * 120.84499 * 179.97438 * 2 1 3 23 23 H 1.08003 * 119.99320 * 359.97438 * 1 2 3 24 24 H 1.07998 * 120.00199 * 179.97438 * 1 2 3 25 25 H 1.09002 * 109.62786 * 111.60966 * 3 2 1 26 26 H 1.09000 * 109.62665 * 351.04106 * 3 2 1 27 27 H 1.08998 * 109.48311 * 185.39190 * 4 3 2 28 28 H 1.08997 * 109.48512 * 65.34931 * 4 3 2 29 29 H 1.09002 * 109.41410 * 303.56621 * 5 4 3 30 30 H 1.09006 * 109.46928 * 54.85959 * 6 5 4 31 31 H 1.08997 * 109.47578 * 294.86013 * 6 5 4 32 32 H 1.09008 * 110.66351 * 318.71241 * 8 7 6 33 33 H 1.08996 * 110.66885 * 81.66763 * 8 7 6 34 34 H 1.08991 * 110.70521 * 278.99366 * 9 8 7 35 35 H 1.08999 * 110.80745 * 155.65823 * 9 8 7 36 36 H 0.97001 * 119.99934 * 359.97438 * 15 14 12 37 37 H 1.08995 * 109.92062 * 26.49274 * 20 7 6 38 38 H 1.09001 * 109.91783 * 265.19899 * 20 7 6 39 39 H 1.09003 * 109.48145 * 56.34746 * 21 5 4 40 40 H 1.09002 * 109.48474 * 176.39034 * 21 5 4 41 41 H 1.08999 * 109.62286 * 248.38999 * 22 2 1 42 42 H 1.08997 * 109.62684 * 8.76673 * 22 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0858 1.2986 0.0000 4 6 3.1150 1.2513 -1.1342 5 6 3.9811 -0.0003 -0.9826 6 6 5.0674 -0.0006 -2.0600 7 7 5.9740 -1.1356 -1.8410 8 6 6.8443 -0.9017 -0.6603 9 6 8.0287 -1.8760 -0.8919 10 6 8.2321 -1.8119 -2.4231 11 1 9.0310 -1.1126 -2.6697 12 6 8.5504 -3.1812 -2.9661 13 1 7.8796 -3.6526 -3.6691 14 6 9.6980 -3.8320 -2.5655 15 7 10.5146 -3.2581 -1.7092 16 14 10.0929 -5.5289 -3.2392 17 1 11.3720 -6.0077 -2.6560 18 1 10.2181 -5.4580 -4.7172 19 1 9.0024 -6.4705 -2.8795 20 6 6.8901 -1.3113 -2.9888 21 6 3.1138 -1.2510 -1.1348 22 6 2.0857 -1.2988 0.0006 23 1 -0.5399 0.9354 0.0004 24 1 -0.5400 -0.9353 -0.0004 25 1 2.5982 1.4190 0.9545 26 1 1.4029 2.1330 -0.1599 27 1 3.7468 2.1383 -1.0890 28 1 2.5979 1.2215 -2.0933 29 1 4.4478 -0.0008 0.0025 30 1 5.6317 0.9305 -2.0072 31 1 4.6046 -0.0897 -3.0427 32 1 7.1951 0.1302 -0.6394 33 1 6.3161 -1.1457 0.2614 34 1 7.7634 -2.8861 -0.5800 35 1 8.9212 -1.5317 -0.3695 36 1 10.3097 -2.3767 -1.3596 37 1 7.0341 -0.3585 -3.4981 38 1 6.4812 -2.0473 -3.6810 39 1 2.5967 -1.2203 -2.0939 40 1 3.7448 -2.1387 -1.0901 41 1 2.5980 -1.4187 0.9552 42 1 1.4023 -2.1334 -0.1555 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000724582710.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:56:40 Heat of formation + Delta-G solvation = -9.895257 kcal Electronic energy + Delta-G solvation = -18616.673740 eV Core-core repulsion = 15981.367735 eV Total energy + Delta-G solvation = -2635.306005 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 249.179 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -39.16181 -37.69763 -34.20304 -32.61816 -31.04687 -29.93004 -28.25957 -26.84903 -24.03249 -23.12564 -22.91989 -20.81926 -19.81011 -19.51492 -18.34783 -16.86319 -15.40227 -15.05226 -14.89445 -14.70687 -14.01732 -13.81201 -13.70529 -13.31444 -13.13556 -12.63359 -12.28845 -12.20686 -12.05113 -11.65532 -11.34301 -11.23613 -11.00860 -10.91230 -10.70040 -10.42690 -10.37142 -10.16018 -10.05810 -10.04210 -9.75006 -9.54137 -9.07095 -8.42162 -8.31241 -7.75599 -6.28660 -3.99915 2.17574 3.47066 3.48940 3.67288 4.46320 4.57602 4.65692 4.74076 4.91120 5.10068 5.21368 5.35442 5.41799 5.45345 5.48752 5.55337 5.67637 5.71977 5.74989 5.83035 5.88713 5.90484 5.98977 6.05757 6.11375 6.15178 6.17462 6.28104 6.39480 6.45628 6.53151 6.68174 6.73933 6.82703 6.89746 7.03906 7.29974 7.35306 7.74374 7.82725 8.28780 8.48488 8.93823 9.70993 11.09315 Molecular weight = 249.18amu Principal moments of inertia in cm(-1) A = 0.041415 B = 0.004388 C = 0.004221 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 675.928942 B = 6379.732141 C = 6631.794332 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.110 4.110 3 C -0.085 4.085 4 C -0.111 4.111 5 C -0.079 4.079 6 C 0.051 3.949 7 N -0.512 5.512 8 C 0.034 3.966 9 C -0.109 4.109 10 C 0.025 3.975 11 H 0.018 0.982 12 C -0.586 4.586 13 H 0.050 0.950 14 C 0.018 3.982 15 N -0.915 5.915 16 Si 1.067 2.933 17 H -0.284 1.284 18 H -0.289 1.289 19 H -0.288 1.288 20 C 0.053 3.947 21 C -0.102 4.102 22 C -0.089 4.089 23 H 0.093 0.907 24 H 0.095 0.905 25 H 0.071 0.929 26 H 0.065 0.935 27 H 0.061 0.939 28 H 0.062 0.938 29 H 0.069 0.931 30 H 0.027 0.973 31 H 0.066 0.934 32 H 0.028 0.972 33 H 0.065 0.935 34 H 0.067 0.933 35 H 0.051 0.949 36 H 0.271 0.729 37 H 0.018 0.982 38 H 0.072 0.928 39 H 0.056 0.944 40 H 0.083 0.917 41 H 0.071 0.929 42 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.929 8.053 3.201 18.133 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.247 4.247 2 C -0.110 4.110 3 C -0.122 4.122 4 C -0.149 4.149 5 C -0.098 4.098 6 C -0.078 4.078 7 N -0.236 5.236 8 C -0.094 4.094 9 C -0.148 4.148 10 C 0.006 3.994 11 H 0.036 0.964 12 C -0.625 4.625 13 H 0.068 0.932 14 C -0.186 4.186 15 N -0.552 5.552 16 Si 0.896 3.104 17 H -0.209 1.209 18 H -0.216 1.216 19 H -0.215 1.215 20 C -0.075 4.075 21 C -0.140 4.140 22 C -0.126 4.126 23 H 0.112 0.888 24 H 0.113 0.887 25 H 0.090 0.910 26 H 0.083 0.917 27 H 0.080 0.920 28 H 0.081 0.919 29 H 0.087 0.913 30 H 0.045 0.955 31 H 0.084 0.916 32 H 0.046 0.954 33 H 0.083 0.917 34 H 0.086 0.914 35 H 0.070 0.930 36 H 0.082 0.918 37 H 0.036 0.964 38 H 0.090 0.910 39 H 0.075 0.925 40 H 0.102 0.898 41 H 0.089 0.911 42 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -15.134 6.366 3.313 16.750 hybrid contribution -0.736 2.103 -0.199 2.237 sum -15.871 8.469 3.114 18.257 Atomic orbital electron populations 1.23565 0.95030 1.01479 1.04626 1.22082 0.95000 0.96219 0.97729 1.20802 0.97530 0.94590 0.99313 1.21587 0.96953 0.97983 0.98393 1.21077 0.94983 0.94394 0.99365 1.22288 0.94561 0.92371 0.98569 1.64683 1.17497 1.37224 1.04163 1.23303 0.94694 0.97586 0.93769 1.22707 0.94455 0.98234 0.99392 1.19638 0.91136 0.97211 0.91438 0.96414 1.21997 1.09525 1.01811 1.29131 0.93188 1.25772 0.92991 1.04519 0.95334 1.70797 1.38264 1.17234 1.28876 0.83569 0.76175 0.74985 0.75707 1.20911 1.21570 1.21465 1.22933 0.94062 0.97872 0.92592 1.21484 0.96242 0.99024 0.97206 1.20879 0.97758 0.94111 0.99841 0.88850 0.88664 0.91042 0.91652 0.92024 0.91937 0.91265 0.95459 0.91550 0.95390 0.91692 0.91386 0.93042 0.91786 0.96370 0.90966 0.92524 0.89850 0.91085 0.91605 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -2.05 13.99 29.01 0.41 -1.65 16 2 C -0.11 -1.18 5.35 -100.51 -0.54 -1.72 16 3 C -0.09 -0.85 6.03 -27.49 -0.17 -1.02 16 4 C -0.11 -1.21 5.21 -26.63 -0.14 -1.35 16 5 C -0.08 -1.03 2.12 -90.66 -0.19 -1.22 16 6 C 0.05 0.78 4.09 -3.82 -0.02 0.77 16 7 N -0.51 -9.68 4.63 -230.34 -1.07 -10.74 16 8 C 0.03 0.65 5.91 -1.81 -0.01 0.64 16 9 C -0.11 -2.54 5.50 -24.78 -0.14 -2.67 16 10 C 0.02 0.62 2.55 -90.41 -0.23 0.39 16 11 H 0.02 0.48 8.00 -51.93 -0.42 0.06 16 12 C -0.59 -16.48 8.39 -34.44 -0.29 -16.77 16 13 H 0.05 1.41 7.34 -52.48 -0.39 1.02 16 14 C 0.02 0.51 5.33 -17.82 -0.10 0.41 16 15 N -0.92 -27.44 13.43 55.43 0.74 -26.70 16 16 Si 1.07 25.31 29.90 -169.99 -5.08 20.22 16 17 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 18 H -0.29 -6.57 7.11 56.52 0.40 -6.16 16 19 H -0.29 -6.58 7.11 56.52 0.40 -6.18 16 20 C 0.05 1.14 6.32 -2.75 -0.02 1.12 16 21 C -0.10 -1.33 5.14 -26.63 -0.14 -1.47 16 22 C -0.09 -1.01 6.04 -27.48 -0.17 -1.18 16 23 H 0.09 0.81 7.92 -52.48 -0.42 0.39 16 24 H 0.10 0.87 7.92 -52.49 -0.42 0.45 16 25 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 26 H 0.06 0.58 7.89 -51.93 -0.41 0.17 16 27 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 28 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 29 H 0.07 0.95 7.17 -51.93 -0.37 0.58 16 30 H 0.03 0.42 7.83 -51.93 -0.41 0.01 16 31 H 0.07 1.00 8.08 -51.93 -0.42 0.58 16 32 H 0.03 0.51 7.81 -51.92 -0.41 0.11 16 33 H 0.06 1.14 7.67 -51.93 -0.40 0.74 16 34 H 0.07 1.72 7.86 -51.93 -0.41 1.32 16 35 H 0.05 1.21 7.03 -51.93 -0.36 0.84 16 36 H 0.27 8.00 5.57 -40.82 -0.23 7.77 16 37 H 0.02 0.37 7.77 -51.93 -0.40 -0.04 16 38 H 0.07 1.62 7.39 -51.93 -0.38 1.24 16 39 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 40 H 0.08 1.27 7.64 -51.93 -0.40 0.87 16 41 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 42 H 0.07 0.71 7.89 -51.93 -0.41 0.30 16 LS Contribution 320.75 15.07 4.83 4.83 Total: -1.00 -29.08 320.75 -9.85 -38.92 By element: Atomic # 1 Polarization: 6.74 SS G_CDS: -7.55 Total: -0.81 kcal Atomic # 6 Polarization: -24.00 SS G_CDS: -1.73 Total: -25.73 kcal Atomic # 7 Polarization: -37.12 SS G_CDS: -0.32 Total: -37.44 kcal Atomic # 14 Polarization: 25.31 SS G_CDS: -5.08 Total: 20.22 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -29.08 -9.85 -38.92 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000724582710.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.030 kcal (2) G-P(sol) polarization free energy of solvation -29.080 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.050 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.845 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.925 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.895 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds