Wall clock time and date at job start Mon Mar 30 2020 06:56:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31008 * 1 3 3 C 1.51262 * 120.85270 * 2 1 4 4 C 1.53225 * 108.53898 * 231.32780 * 3 2 1 5 5 C 1.52961 * 109.40426 * 305.37284 * 4 3 2 6 6 C 1.52995 * 109.41644 * 183.70186 * 5 4 3 7 7 N 1.46904 * 109.47391 * 174.85621 * 6 5 4 8 8 C 1.48535 * 111.00151 * 287.40290 * 7 6 5 9 9 C 1.55103 * 103.28338 * 200.33129 * 8 7 6 10 10 C 1.54597 * 102.84580 * 37.30378 * 9 8 7 11 11 H 1.09000 * 110.31032 * 97.11750 * 10 9 8 12 12 C 1.50698 * 110.30463 * 219.18773 * 10 9 8 13 13 H 1.08005 * 119.99819 * 117.21101 * 12 10 9 14 14 C 1.37875 * 120.00046 * 297.20442 * 12 10 9 15 15 N 1.31511 * 120.00192 * 0.02562 * 14 12 10 16 16 Si 1.86798 * 119.99979 * 180.02562 * 14 12 10 17 17 H 1.48506 * 109.47297 * 180.02562 * 16 14 12 18 18 H 1.48503 * 109.47261 * 60.00310 * 16 14 12 19 19 H 1.48500 * 109.47454 * 300.00304 * 16 14 12 20 20 C 1.47897 * 110.99941 * 170.00152 * 7 6 5 21 21 C 1.52959 * 109.76005 * 63.62956 * 5 4 3 22 22 C 1.51272 * 120.84499 * 179.97438 * 2 1 3 23 23 H 1.08003 * 119.99320 * 359.97438 * 1 2 3 24 24 H 1.07998 * 120.00199 * 179.97438 * 1 2 3 25 25 H 1.09002 * 109.62786 * 111.60966 * 3 2 1 26 26 H 1.09000 * 109.62665 * 351.04106 * 3 2 1 27 27 H 1.08998 * 109.48311 * 185.39190 * 4 3 2 28 28 H 1.08997 * 109.48512 * 65.34931 * 4 3 2 29 29 H 1.09002 * 109.41410 * 303.56621 * 5 4 3 30 30 H 1.09006 * 109.46928 * 54.85959 * 6 5 4 31 31 H 1.08997 * 109.47578 * 294.86013 * 6 5 4 32 32 H 1.09008 * 110.66351 * 318.71241 * 8 7 6 33 33 H 1.08996 * 110.66885 * 81.66763 * 8 7 6 34 34 H 1.08991 * 110.70521 * 278.99366 * 9 8 7 35 35 H 1.08999 * 110.80745 * 155.65823 * 9 8 7 36 36 H 0.97001 * 119.99934 * 359.97438 * 15 14 12 37 37 H 1.08995 * 109.92062 * 26.49274 * 20 7 6 38 38 H 1.09001 * 109.91783 * 265.19899 * 20 7 6 39 39 H 1.09003 * 109.48145 * 56.34746 * 21 5 4 40 40 H 1.09002 * 109.48474 * 176.39034 * 21 5 4 41 41 H 1.08999 * 109.62286 * 248.38999 * 22 2 1 42 42 H 1.08997 * 109.62684 * 8.76673 * 22 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0858 1.2986 0.0000 4 6 3.1150 1.2513 -1.1342 5 6 3.9811 -0.0003 -0.9826 6 6 5.0674 -0.0006 -2.0600 7 7 5.9740 -1.1356 -1.8410 8 6 6.8443 -0.9017 -0.6603 9 6 8.0287 -1.8760 -0.8919 10 6 8.2321 -1.8119 -2.4231 11 1 9.0310 -1.1126 -2.6697 12 6 8.5504 -3.1812 -2.9661 13 1 7.8796 -3.6526 -3.6691 14 6 9.6980 -3.8320 -2.5655 15 7 10.5146 -3.2581 -1.7092 16 14 10.0929 -5.5289 -3.2392 17 1 11.3720 -6.0077 -2.6560 18 1 10.2181 -5.4580 -4.7172 19 1 9.0024 -6.4705 -2.8795 20 6 6.8901 -1.3113 -2.9888 21 6 3.1138 -1.2510 -1.1348 22 6 2.0857 -1.2988 0.0006 23 1 -0.5399 0.9354 0.0004 24 1 -0.5400 -0.9353 -0.0004 25 1 2.5982 1.4190 0.9545 26 1 1.4029 2.1330 -0.1599 27 1 3.7468 2.1383 -1.0890 28 1 2.5979 1.2215 -2.0933 29 1 4.4478 -0.0008 0.0025 30 1 5.6317 0.9305 -2.0072 31 1 4.6046 -0.0897 -3.0427 32 1 7.1951 0.1302 -0.6394 33 1 6.3161 -1.1457 0.2614 34 1 7.7634 -2.8861 -0.5800 35 1 8.9212 -1.5317 -0.3695 36 1 10.3097 -2.3767 -1.3596 37 1 7.0341 -0.3585 -3.4981 38 1 6.4812 -2.0473 -3.6810 39 1 2.5967 -1.2203 -2.0939 40 1 3.7448 -2.1387 -1.0901 41 1 2.5980 -1.4187 0.9552 42 1 1.4023 -2.1334 -0.1555 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000724582710.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:56:39 Heat of formation + Delta-G solvation = -25.084743 kcal Electronic energy + Delta-G solvation = -18617.332405 eV Core-core repulsion = 15981.367735 eV Total energy + Delta-G solvation = -2635.964671 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 249.179 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.40979 -39.05155 -35.78592 -34.12281 -31.94284 -31.49357 -30.06276 -28.06054 -26.02020 -24.37526 -23.85680 -22.18444 -21.54829 -20.91491 -19.21340 -18.97672 -16.98183 -16.42724 -15.83458 -15.69010 -15.64518 -15.38196 -14.86255 -14.58260 -14.42289 -14.13068 -13.80701 -13.51642 -13.20848 -13.11109 -12.71099 -12.68426 -12.49109 -12.30595 -12.07150 -11.93906 -11.83144 -11.78773 -11.59450 -11.40042 -11.13402 -10.95373 -10.54367 -10.45527 -9.86281 -9.28659 -8.56612 -6.28760 1.40760 1.53958 1.61785 1.80866 2.59204 3.06784 3.22964 3.75339 3.79727 3.87006 3.99773 4.16267 4.20338 4.28188 4.36717 4.38722 4.47006 4.52962 4.57746 4.60262 4.70970 4.72955 4.83942 4.84469 4.97367 5.01310 5.04420 5.07194 5.10241 5.17768 5.21996 5.32511 5.36654 5.44890 5.45449 5.53779 5.82347 6.03661 6.04303 6.12363 6.22118 6.27845 6.69181 7.50070 8.82137 Molecular weight = 249.18amu Principal moments of inertia in cm(-1) A = 0.041415 B = 0.004388 C = 0.004221 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 675.928942 B = 6379.732141 C = 6631.794332 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.128 4.128 3 C -0.082 4.082 4 C -0.106 4.106 5 C -0.073 4.073 6 C 0.051 3.949 7 N -0.517 5.517 8 C 0.048 3.952 9 C -0.102 4.102 10 C 0.013 3.987 11 H -0.007 1.007 12 C -0.601 4.601 13 H 0.044 0.956 14 C -0.031 4.031 15 N -0.939 5.939 16 Si 1.113 2.887 17 H -0.285 1.285 18 H -0.272 1.272 19 H -0.274 1.274 20 C 0.063 3.937 21 C -0.098 4.098 22 C -0.086 4.086 23 H 0.107 0.893 24 H 0.099 0.901 25 H 0.073 0.927 26 H 0.081 0.919 27 H 0.070 0.930 28 H 0.064 0.936 29 H 0.064 0.936 30 H 0.034 0.966 31 H 0.070 0.930 32 H 0.042 0.958 33 H 0.084 0.916 34 H 0.040 0.960 35 H 0.040 0.960 36 H 0.261 0.739 37 H 0.031 0.969 38 H 0.060 0.940 39 H 0.055 0.945 40 H 0.057 0.943 41 H 0.068 0.932 42 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.845 8.815 3.280 20.172 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C -0.128 4.128 3 C -0.119 4.119 4 C -0.144 4.144 5 C -0.091 4.091 6 C -0.077 4.077 7 N -0.241 5.241 8 C -0.079 4.079 9 C -0.141 4.141 10 C -0.006 4.006 11 H 0.011 0.989 12 C -0.639 4.639 13 H 0.062 0.938 14 C -0.229 4.229 15 N -0.577 5.577 16 Si 0.935 3.065 17 H -0.210 1.210 18 H -0.197 1.197 19 H -0.199 1.199 20 C -0.065 4.065 21 C -0.136 4.136 22 C -0.123 4.123 23 H 0.125 0.875 24 H 0.118 0.882 25 H 0.091 0.909 26 H 0.099 0.901 27 H 0.089 0.911 28 H 0.082 0.918 29 H 0.082 0.918 30 H 0.052 0.948 31 H 0.089 0.911 32 H 0.060 0.940 33 H 0.103 0.897 34 H 0.059 0.941 35 H 0.059 0.941 36 H 0.072 0.928 37 H 0.049 0.951 38 H 0.078 0.922 39 H 0.073 0.927 40 H 0.075 0.925 41 H 0.086 0.914 42 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -17.077 7.152 3.390 18.822 hybrid contribution -0.184 1.891 -0.235 1.914 sum -17.262 9.042 3.155 19.740 Atomic orbital electron populations 1.23758 0.94788 1.02423 1.02805 1.22103 0.95412 0.95986 0.99317 1.20799 0.97442 0.94762 0.98924 1.21535 0.96945 0.96892 0.98996 1.21023 0.94499 0.95596 0.98027 1.22395 0.94393 0.91062 0.99831 1.64661 1.16962 1.39572 1.02915 1.23183 0.93102 0.96973 0.94659 1.22469 0.95911 0.97877 0.97803 1.19663 0.92399 0.95533 0.92976 0.98878 1.22357 1.09522 1.03142 1.28919 0.93765 1.27168 0.93013 1.07765 0.94981 1.70903 1.39159 1.17263 1.30346 0.82982 0.76259 0.71190 0.76084 1.21011 1.19712 1.19905 1.22681 0.92558 0.97965 0.93261 1.21402 0.96306 0.97942 0.97958 1.20820 0.97467 0.95104 0.98893 0.87455 0.88243 0.90862 0.90073 0.91123 0.91756 0.91772 0.94803 0.91111 0.94009 0.89747 0.94113 0.94128 0.92807 0.95079 0.92170 0.92650 0.92466 0.91379 0.91201 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -3.35 13.99 67.77 0.95 -2.40 16 2 C -0.13 -2.43 5.35 -16.14 -0.09 -2.51 16 3 C -0.08 -1.40 6.03 30.10 0.18 -1.22 16 4 C -0.11 -2.01 5.21 30.66 0.16 -1.85 16 5 C -0.07 -1.75 2.12 -10.82 -0.02 -1.77 16 6 C 0.05 1.48 4.09 86.30 0.35 1.83 16 7 N -0.52 -19.13 4.63 -882.66 -4.08 -23.22 16 8 C 0.05 1.81 5.91 86.71 0.51 2.32 16 9 C -0.10 -4.84 5.50 31.86 0.18 -4.66 16 10 C 0.01 0.69 2.55 -10.66 -0.03 0.66 16 11 H -0.01 -0.38 8.00 -2.39 -0.02 -0.40 16 12 C -0.60 -34.52 8.39 25.60 0.21 -34.31 16 13 H 0.04 2.53 7.34 -2.91 -0.02 2.51 16 14 C -0.03 -1.80 5.33 84.65 0.45 -1.35 16 15 N -0.94 -57.60 13.43 21.45 0.29 -57.31 16 16 Si 1.11 51.09 29.90 68.60 2.05 53.14 16 17 H -0.28 -13.04 7.11 99.48 0.71 -12.34 16 18 H -0.27 -11.63 7.11 99.48 0.71 -10.93 16 19 H -0.27 -11.83 7.11 99.48 0.71 -11.12 16 20 C 0.06 2.72 6.32 86.45 0.55 3.27 16 21 C -0.10 -2.46 5.14 30.66 0.16 -2.30 16 22 C -0.09 -1.82 6.04 30.11 0.18 -1.64 16 23 H 0.11 1.48 7.92 -2.91 -0.02 1.46 16 24 H 0.10 1.55 7.92 -2.91 -0.02 1.53 16 25 H 0.07 1.23 8.14 -2.39 -0.02 1.21 16 26 H 0.08 1.15 7.89 -2.39 -0.02 1.13 16 27 H 0.07 1.23 8.14 -2.39 -0.02 1.22 16 28 H 0.06 1.22 8.14 -2.39 -0.02 1.20 16 29 H 0.06 1.63 7.17 -2.39 -0.02 1.61 16 30 H 0.03 0.95 7.83 -2.38 -0.02 0.93 16 31 H 0.07 2.00 8.08 -2.39 -0.02 1.98 16 32 H 0.04 1.46 7.81 -2.38 -0.02 1.44 16 33 H 0.08 2.84 7.67 -2.39 -0.02 2.83 16 34 H 0.04 2.12 7.86 -2.39 -0.02 2.10 16 35 H 0.04 1.97 7.03 -2.39 -0.02 1.95 16 36 H 0.26 16.01 5.57 -92.71 -0.52 15.49 16 37 H 0.03 1.24 7.77 -2.39 -0.02 1.22 16 38 H 0.06 2.72 7.39 -2.39 -0.02 2.70 16 39 H 0.05 1.37 8.14 -2.39 -0.02 1.36 16 40 H 0.06 1.72 7.64 -2.39 -0.02 1.70 16 41 H 0.07 1.47 8.14 -2.39 -0.02 1.45 16 42 H 0.07 1.40 7.89 -2.39 -0.02 1.38 16 Total: -1.00 -62.93 320.75 3.20 -59.73 By element: Atomic # 1 Polarization: 12.39 SS G_CDS: 1.20 Total: 13.59 kcal Atomic # 6 Polarization: -49.68 SS G_CDS: 3.75 Total: -45.93 kcal Atomic # 7 Polarization: -76.73 SS G_CDS: -3.80 Total: -80.53 kcal Atomic # 14 Polarization: 51.09 SS G_CDS: 2.05 Total: 53.14 kcal Total: -62.93 3.20 -59.73 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000724582710.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.647 kcal (2) G-P(sol) polarization free energy of solvation -62.933 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.286 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.201 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.732 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.085 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds