Wall clock time and date at job start Mon Mar 30 2020 06:56:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30994 * 1 3 3 C 1.51270 * 120.85000 * 2 1 4 4 C 1.53226 * 108.53727 * 128.63186 * 3 2 1 5 5 C 1.52969 * 109.40109 * 54.63013 * 4 3 2 6 6 C 1.53000 * 109.41282 * 176.36679 * 5 4 3 7 7 N 1.46901 * 109.47170 * 185.14146 * 6 5 4 8 8 C 1.46899 * 111.00012 * 189.99840 * 7 6 5 9 9 C 1.50696 * 109.46935 * 159.89522 * 8 7 6 10 10 H 1.07996 * 120.00112 * 354.22041 * 9 8 7 11 11 C 1.37878 * 120.00110 * 174.22084 * 9 8 7 12 12 N 1.31520 * 119.99740 * 0.02562 * 11 9 8 13 13 Si 1.86798 * 120.00301 * 180.02562 * 11 9 8 14 14 H 1.48498 * 109.47132 * 90.00101 * 13 11 9 15 15 H 1.48496 * 109.47161 * 209.99958 * 13 11 9 16 16 H 1.48494 * 109.46923 * 330.00038 * 13 11 9 17 17 C 1.46900 * 110.99812 * 66.04364 * 7 6 5 18 18 C 1.52999 * 117.50005 * 261.69299 * 17 7 6 19 19 C 1.52998 * 117.49666 * 193.03746 * 17 7 6 20 20 C 1.52960 * 109.75769 * 296.43684 * 5 4 3 21 21 C 1.51264 * 120.85268 * 179.97438 * 2 1 3 22 22 H 1.08003 * 120.00247 * 359.97438 * 1 2 3 23 23 H 1.07995 * 120.00319 * 179.97438 * 1 2 3 24 24 H 1.09005 * 109.62687 * 8.92023 * 3 2 1 25 25 H 1.09001 * 109.63068 * 248.35019 * 3 2 1 26 26 H 1.08997 * 109.48649 * 294.65404 * 4 3 2 27 27 H 1.09006 * 109.48560 * 174.60594 * 4 3 2 28 28 H 1.08995 * 109.41221 * 56.51173 * 5 4 3 29 29 H 1.09001 * 109.46985 * 305.14356 * 6 5 4 30 30 H 1.08999 * 109.47227 * 65.13858 * 6 5 4 31 31 H 1.08996 * 109.47368 * 279.90093 * 8 7 6 32 32 H 1.09007 * 109.46992 * 39.89724 * 8 7 6 33 33 H 0.96997 * 120.00223 * 180.02562 * 12 11 9 34 34 H 1.09000 * 115.55050 * 47.36879 * 17 7 6 35 35 H 1.09000 * 117.49880 * 0.02562 * 18 17 7 36 36 H 1.08999 * 117.49884 * 145.02199 * 18 17 7 37 37 H 1.09002 * 117.49980 * 214.98448 * 19 17 7 38 38 H 1.09001 * 117.49766 * 359.97205 * 19 17 7 39 39 H 1.09001 * 109.47959 * 183.54520 * 20 5 4 40 40 H 1.09003 * 109.47884 * 303.58098 * 20 5 4 41 41 H 1.09008 * 109.62355 * 351.07863 * 21 2 1 42 42 H 1.08997 * 109.63312 * 111.45629 * 21 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0856 1.2987 0.0000 4 6 3.1141 1.2518 1.1349 5 6 3.9805 0.0001 0.9841 6 6 5.0651 -0.0006 2.0632 7 7 5.9719 -1.1356 1.8453 8 6 6.8800 -1.3106 2.9867 9 6 7.4328 -2.7125 2.9783 10 1 7.0692 -3.4321 2.2598 11 6 8.4028 -3.0765 3.8881 12 7 8.8452 -2.2003 4.7635 13 14 9.0886 -4.8140 3.8774 14 1 10.2650 -4.8762 2.9733 15 1 9.5009 -5.1919 5.2530 16 1 8.0450 -5.7550 3.3973 17 6 6.7242 -0.9755 0.5937 18 6 6.2070 -1.7163 -0.6411 19 6 7.4791 -2.1956 0.0624 20 6 3.1127 -1.2505 1.1345 21 6 2.0857 -1.2986 0.0006 22 1 -0.5401 0.9353 0.0004 23 1 -0.5400 -0.9352 -0.0004 24 1 1.4026 2.1331 0.1592 25 1 2.5986 1.4188 -0.9542 26 1 2.5965 1.2222 2.0936 27 1 3.7460 2.1389 1.0898 28 1 4.4487 0.0001 -0.0001 29 1 5.6294 0.9305 2.0117 30 1 4.6005 -0.0900 3.0452 31 1 7.6998 -0.5962 2.9116 32 1 6.3339 -1.1408 3.9147 33 1 9.5278 -2.4561 5.4033 34 1 7.1781 0.0034 0.4400 35 1 5.3082 -2.3220 -0.5249 36 1 6.3209 -1.2248 -1.6072 37 1 8.4295 -2.0193 -0.4413 38 1 7.4179 -3.1169 0.6417 39 1 3.7436 -2.1382 1.0892 40 1 2.5952 -1.2206 2.0934 41 1 1.4026 -2.1330 0.1602 42 1 2.5959 -1.4208 -0.9548 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000724595120.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:56:57 Heat of formation + Delta-G solvation = 26.780933 kcal Electronic energy + Delta-G solvation = -18880.517018 eV Core-core repulsion = 16246.801412 eV Total energy + Delta-G solvation = -2633.715606 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 249.179 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -38.94800 -37.21673 -33.96618 -33.01274 -31.62755 -30.87055 -27.93936 -25.93304 -22.96820 -22.80787 -22.19015 -21.53872 -20.28126 -19.14413 -18.22416 -16.50376 -15.03379 -14.82499 -14.76455 -14.60905 -14.44451 -13.83752 -13.73406 -13.40003 -12.91513 -12.39068 -12.20192 -11.99647 -11.82433 -11.58900 -11.28595 -11.14825 -10.91949 -10.82180 -10.74761 -10.59355 -10.33413 -10.11868 -9.87351 -9.77244 -9.47134 -9.10148 -9.07664 -8.90005 -8.36422 -7.21262 -5.97664 -3.97349 2.30274 3.33458 3.40004 3.43492 4.43685 4.62772 4.70088 4.86524 4.90308 5.12878 5.28514 5.36873 5.39316 5.52207 5.62446 5.67684 5.71232 5.75732 5.81311 5.87309 5.96781 5.98038 6.09557 6.16081 6.22148 6.24611 6.32379 6.37634 6.43705 6.52863 6.59270 6.73164 6.80217 6.90613 6.97532 7.06277 7.27531 7.43696 7.89938 8.17477 8.27116 8.60461 9.09086 9.65255 11.13000 Molecular weight = 249.18amu Principal moments of inertia in cm(-1) A = 0.031932 B = 0.005221 C = 0.005147 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 876.649071 B = 5361.438170 C = 5438.882838 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.107 4.107 3 C -0.085 4.085 4 C -0.112 4.112 5 C -0.080 4.080 6 C 0.064 3.936 7 N -0.507 5.507 8 C 0.195 3.805 9 C -0.495 4.495 10 H 0.067 0.933 11 C 0.053 3.947 12 N -0.901 5.901 13 Si 0.893 3.107 14 H -0.282 1.282 15 H -0.288 1.288 16 H -0.273 1.273 17 C 0.029 3.971 18 C -0.185 4.185 19 C -0.158 4.158 20 C -0.100 4.100 21 C -0.088 4.088 22 H 0.092 0.908 23 H 0.094 0.906 24 H 0.063 0.937 25 H 0.070 0.930 26 H 0.061 0.939 27 H 0.060 0.940 28 H 0.073 0.927 29 H 0.020 0.980 30 H 0.066 0.934 31 H -0.004 1.004 32 H 0.023 0.977 33 H 0.260 0.740 34 H 0.066 0.934 35 H 0.092 0.908 36 H 0.076 0.924 37 H 0.078 0.922 38 H 0.117 0.883 39 H 0.083 0.917 40 H 0.055 0.945 41 H 0.063 0.937 42 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.611 5.144 -9.902 16.103 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.251 4.251 2 C -0.107 4.107 3 C -0.122 4.122 4 C -0.150 4.150 5 C -0.099 4.099 6 C -0.065 4.065 7 N -0.232 5.232 8 C 0.070 3.930 9 C -0.534 4.534 10 H 0.085 0.915 11 C -0.147 4.147 12 N -0.542 5.542 13 Si 0.721 3.279 14 H -0.208 1.208 15 H -0.214 1.214 16 H -0.198 1.198 17 C -0.081 4.081 18 C -0.223 4.223 19 C -0.195 4.195 20 C -0.138 4.138 21 C -0.125 4.125 22 H 0.110 0.890 23 H 0.112 0.888 24 H 0.081 0.919 25 H 0.088 0.912 26 H 0.080 0.920 27 H 0.079 0.921 28 H 0.091 0.909 29 H 0.038 0.962 30 H 0.085 0.915 31 H 0.014 0.986 32 H 0.041 0.959 33 H 0.069 0.931 34 H 0.083 0.917 35 H 0.111 0.889 36 H 0.095 0.905 37 H 0.096 0.904 38 H 0.135 0.865 39 H 0.101 0.899 40 H 0.074 0.926 41 H 0.081 0.919 42 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -11.759 4.733 -9.759 15.997 hybrid contribution 0.965 -0.049 0.246 0.997 sum -10.794 4.684 -9.513 15.131 Atomic orbital electron populations 1.23535 0.95068 1.01354 1.05127 1.22093 0.94948 0.96325 0.97292 1.20803 0.97544 0.94450 0.99380 1.21601 0.96925 0.98302 0.98171 1.21116 0.95032 0.93838 0.99925 1.22065 0.93937 0.92306 0.98166 1.61887 1.20398 1.38231 1.02634 1.19703 0.89611 0.96970 0.86693 1.21220 1.19894 0.96331 1.15911 0.91503 1.24980 0.96806 0.97256 0.95697 1.69959 1.30183 1.34261 1.19754 0.86577 0.79285 0.84924 0.77131 1.20791 1.21399 1.19815 1.22025 1.00621 0.94595 0.90832 1.23038 0.99232 1.05041 0.94980 1.23126 0.93733 1.00653 1.02000 1.21444 0.96111 0.99307 0.96929 1.20855 0.97796 0.93948 0.99937 0.88953 0.88772 0.91858 0.91152 0.92038 0.92141 0.90899 0.96231 0.91539 0.98576 0.95897 0.93083 0.91688 0.88927 0.90513 0.90388 0.86488 0.89854 0.92646 0.91864 0.91183 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -2.29 13.99 29.02 0.41 -1.88 16 2 C -0.11 -1.25 5.35 -100.51 -0.54 -1.78 16 3 C -0.08 -0.94 6.03 -27.49 -0.17 -1.10 16 4 C -0.11 -1.39 5.21 -26.63 -0.14 -1.53 16 5 C -0.08 -1.16 1.93 -90.66 -0.18 -1.34 16 6 C 0.06 1.14 4.32 -3.82 -0.02 1.12 16 7 N -0.51 -10.59 3.95 -228.09 -0.90 -11.49 16 8 C 0.19 5.01 4.77 -4.98 -0.02 4.99 16 9 C -0.49 -13.53 7.80 -34.44 -0.27 -13.80 16 10 H 0.07 1.80 5.78 -52.49 -0.30 1.50 16 11 C 0.05 1.49 5.46 -17.82 -0.10 1.40 16 12 N -0.90 -26.74 13.29 55.43 0.74 -26.00 16 13 Si 0.89 21.52 29.54 -169.99 -5.02 16.50 16 14 H -0.28 -6.71 7.11 56.52 0.40 -6.30 16 15 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 16 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 17 C 0.03 0.55 4.18 -67.71 -0.28 0.27 16 18 C -0.19 -3.01 9.19 -26.70 -0.25 -3.26 16 19 C -0.16 -3.01 9.48 -26.70 -0.25 -3.26 16 20 C -0.10 -1.45 5.13 -26.72 -0.14 -1.59 16 21 C -0.09 -1.09 6.03 -27.57 -0.17 -1.25 16 22 H 0.09 0.88 7.92 -52.48 -0.42 0.47 16 23 H 0.09 0.94 7.92 -52.49 -0.42 0.52 16 24 H 0.06 0.63 7.89 -51.93 -0.41 0.22 16 25 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 26 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 27 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 28 H 0.07 1.08 6.30 -51.93 -0.33 0.76 16 29 H 0.02 0.35 8.12 -51.93 -0.42 -0.07 16 30 H 0.07 1.22 7.83 -51.93 -0.41 0.82 16 31 H 0.00 -0.10 7.99 -51.93 -0.42 -0.52 16 32 H 0.02 0.63 7.73 -51.93 -0.40 0.23 16 33 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 34 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16 35 H 0.09 1.51 7.60 -51.93 -0.39 1.12 16 36 H 0.08 1.09 8.14 -51.93 -0.42 0.66 16 37 H 0.08 1.37 8.14 -51.93 -0.42 0.95 16 38 H 0.12 2.51 5.42 -51.93 -0.28 2.23 16 39 H 0.08 1.38 7.10 -51.93 -0.37 1.01 16 40 H 0.05 0.83 8.14 -51.93 -0.42 0.40 16 41 H 0.06 0.74 7.89 -51.92 -0.41 0.33 16 42 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 LS Contribution 325.89 15.07 4.91 4.91 Total: -1.00 -28.33 325.89 -9.86 -38.19 By element: Atomic # 1 Polarization: 8.40 SS G_CDS: -7.49 Total: 0.92 kcal Atomic # 6 Polarization: -20.92 SS G_CDS: -2.10 Total: -23.03 kcal Atomic # 7 Polarization: -37.33 SS G_CDS: -0.16 Total: -37.49 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -5.02 Total: 16.50 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -28.33 -9.86 -38.19 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000724595120.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.972 kcal (2) G-P(sol) polarization free energy of solvation -28.326 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.645 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.864 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.191 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.781 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds