Wall clock time and date at job start Mon Mar 30 2020 06:56:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30994 * 1 3 3 C 1.51270 * 120.85000 * 2 1 4 4 C 1.53226 * 108.53727 * 128.63186 * 3 2 1 5 5 C 1.52969 * 109.40109 * 54.63013 * 4 3 2 6 6 C 1.53000 * 109.41282 * 176.36679 * 5 4 3 7 7 N 1.46901 * 109.47170 * 185.14146 * 6 5 4 8 8 C 1.46899 * 111.00012 * 189.99840 * 7 6 5 9 9 C 1.50696 * 109.46935 * 159.89522 * 8 7 6 10 10 H 1.07996 * 120.00112 * 354.22041 * 9 8 7 11 11 C 1.37878 * 120.00110 * 174.22084 * 9 8 7 12 12 N 1.31520 * 119.99740 * 0.02562 * 11 9 8 13 13 Si 1.86798 * 120.00301 * 180.02562 * 11 9 8 14 14 H 1.48498 * 109.47132 * 90.00101 * 13 11 9 15 15 H 1.48496 * 109.47161 * 209.99958 * 13 11 9 16 16 H 1.48494 * 109.46923 * 330.00038 * 13 11 9 17 17 C 1.46900 * 110.99812 * 66.04364 * 7 6 5 18 18 C 1.52999 * 117.50005 * 261.69299 * 17 7 6 19 19 C 1.52998 * 117.49666 * 193.03746 * 17 7 6 20 20 C 1.52960 * 109.75769 * 296.43684 * 5 4 3 21 21 C 1.51264 * 120.85268 * 179.97438 * 2 1 3 22 22 H 1.08003 * 120.00247 * 359.97438 * 1 2 3 23 23 H 1.07995 * 120.00319 * 179.97438 * 1 2 3 24 24 H 1.09005 * 109.62687 * 8.92023 * 3 2 1 25 25 H 1.09001 * 109.63068 * 248.35019 * 3 2 1 26 26 H 1.08997 * 109.48649 * 294.65404 * 4 3 2 27 27 H 1.09006 * 109.48560 * 174.60594 * 4 3 2 28 28 H 1.08995 * 109.41221 * 56.51173 * 5 4 3 29 29 H 1.09001 * 109.46985 * 305.14356 * 6 5 4 30 30 H 1.08999 * 109.47227 * 65.13858 * 6 5 4 31 31 H 1.08996 * 109.47368 * 279.90093 * 8 7 6 32 32 H 1.09007 * 109.46992 * 39.89724 * 8 7 6 33 33 H 0.96997 * 120.00223 * 180.02562 * 12 11 9 34 34 H 1.09000 * 115.55050 * 47.36879 * 17 7 6 35 35 H 1.09000 * 117.49880 * 0.02562 * 18 17 7 36 36 H 1.08999 * 117.49884 * 145.02199 * 18 17 7 37 37 H 1.09002 * 117.49980 * 214.98448 * 19 17 7 38 38 H 1.09001 * 117.49766 * 359.97205 * 19 17 7 39 39 H 1.09001 * 109.47959 * 183.54520 * 20 5 4 40 40 H 1.09003 * 109.47884 * 303.58098 * 20 5 4 41 41 H 1.09008 * 109.62355 * 351.07863 * 21 2 1 42 42 H 1.08997 * 109.63312 * 111.45629 * 21 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0856 1.2987 0.0000 4 6 3.1141 1.2518 1.1349 5 6 3.9805 0.0001 0.9841 6 6 5.0651 -0.0006 2.0632 7 7 5.9719 -1.1356 1.8453 8 6 6.8800 -1.3106 2.9867 9 6 7.4328 -2.7125 2.9783 10 1 7.0692 -3.4321 2.2598 11 6 8.4028 -3.0765 3.8881 12 7 8.8452 -2.2003 4.7635 13 14 9.0886 -4.8140 3.8774 14 1 10.2650 -4.8762 2.9733 15 1 9.5009 -5.1919 5.2530 16 1 8.0450 -5.7550 3.3973 17 6 6.7242 -0.9755 0.5937 18 6 6.2070 -1.7163 -0.6411 19 6 7.4791 -2.1956 0.0624 20 6 3.1127 -1.2505 1.1345 21 6 2.0857 -1.2986 0.0006 22 1 -0.5401 0.9353 0.0004 23 1 -0.5400 -0.9352 -0.0004 24 1 1.4026 2.1331 0.1592 25 1 2.5986 1.4188 -0.9542 26 1 2.5965 1.2222 2.0936 27 1 3.7460 2.1389 1.0898 28 1 4.4487 0.0001 -0.0001 29 1 5.6294 0.9305 2.0117 30 1 4.6005 -0.0900 3.0452 31 1 7.6998 -0.5962 2.9116 32 1 6.3339 -1.1408 3.9147 33 1 9.5278 -2.4561 5.4033 34 1 7.1781 0.0034 0.4400 35 1 5.3082 -2.3220 -0.5249 36 1 6.3209 -1.2248 -1.6072 37 1 8.4295 -2.0193 -0.4413 38 1 7.4179 -3.1169 0.6417 39 1 3.7436 -2.1382 1.0892 40 1 2.5952 -1.2206 2.0934 41 1 1.4026 -2.1330 0.1602 42 1 2.5959 -1.4208 -0.9548 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000724595120.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:56:56 Heat of formation + Delta-G solvation = 12.485434 kcal Electronic energy + Delta-G solvation = -18881.136917 eV Core-core repulsion = 16246.801412 eV Total energy + Delta-G solvation = -2634.335506 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 249.179 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.19953 -38.57500 -35.42579 -34.84133 -33.16567 -31.87185 -29.58617 -27.47690 -24.41715 -24.05504 -23.76736 -22.98084 -21.57596 -20.65151 -19.17681 -18.53503 -16.72106 -16.48170 -16.17730 -15.75648 -15.63599 -15.23059 -14.99993 -14.49702 -14.36008 -14.08847 -13.73182 -13.33358 -13.10203 -13.02135 -12.88276 -12.63764 -12.55104 -12.29938 -12.24305 -11.85577 -11.73019 -11.62479 -11.25754 -11.09152 -10.93353 -10.88218 -10.62392 -10.50439 -9.81007 -8.96120 -8.14367 -6.21942 1.41726 1.42524 1.45657 1.53621 2.42455 3.08056 3.17581 3.28719 3.83486 3.92538 3.94249 4.22346 4.24851 4.31142 4.34297 4.49914 4.58337 4.61745 4.63303 4.67404 4.78495 4.89615 4.91767 4.93758 5.03466 5.12316 5.12427 5.13077 5.19038 5.22095 5.27646 5.37001 5.41615 5.52129 5.55333 5.62921 5.79078 5.88080 6.09392 6.13649 6.46704 6.70126 6.93638 7.45897 8.96420 Molecular weight = 249.18amu Principal moments of inertia in cm(-1) A = 0.031932 B = 0.005221 C = 0.005147 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 876.649071 B = 5361.438170 C = 5438.882838 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.126 4.126 3 C -0.079 4.079 4 C -0.108 4.108 5 C -0.067 4.067 6 C 0.063 3.937 7 N -0.507 5.507 8 C 0.210 3.790 9 C -0.500 4.500 10 H 0.070 0.930 11 C -0.001 4.001 12 N -0.940 5.940 13 Si 0.962 3.038 14 H -0.273 1.273 15 H -0.286 1.286 16 H -0.264 1.264 17 C 0.004 3.996 18 C -0.141 4.141 19 C -0.174 4.174 20 C -0.096 4.096 21 C -0.082 4.082 22 H 0.106 0.894 23 H 0.100 0.900 24 H 0.079 0.921 25 H 0.077 0.923 26 H 0.056 0.944 27 H 0.066 0.934 28 H 0.076 0.924 29 H 0.016 0.984 30 H 0.052 0.948 31 H -0.038 1.038 32 H -0.006 1.006 33 H 0.261 0.739 34 H 0.065 0.935 35 H 0.095 0.905 36 H 0.111 0.889 37 H 0.091 0.909 38 H 0.090 0.910 39 H 0.059 0.941 40 H 0.044 0.956 41 H 0.068 0.932 42 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.949 4.882 -12.062 18.357 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.240 4.240 2 C -0.126 4.126 3 C -0.116 4.116 4 C -0.147 4.147 5 C -0.086 4.086 6 C -0.065 4.065 7 N -0.231 5.231 8 C 0.084 3.916 9 C -0.539 4.539 10 H 0.088 0.912 11 C -0.198 4.198 12 N -0.582 5.582 13 Si 0.787 3.213 14 H -0.199 1.199 15 H -0.212 1.212 16 H -0.188 1.188 17 C -0.105 4.105 18 C -0.179 4.179 19 C -0.211 4.211 20 C -0.134 4.134 21 C -0.119 4.119 22 H 0.124 0.876 23 H 0.118 0.882 24 H 0.097 0.903 25 H 0.096 0.904 26 H 0.075 0.925 27 H 0.085 0.915 28 H 0.094 0.906 29 H 0.034 0.966 30 H 0.070 0.930 31 H -0.020 1.020 32 H 0.012 0.988 33 H 0.070 0.930 34 H 0.083 0.917 35 H 0.113 0.887 36 H 0.129 0.871 37 H 0.109 0.891 38 H 0.108 0.892 39 H 0.078 0.922 40 H 0.063 0.937 41 H 0.087 0.913 42 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -13.117 4.474 -11.942 18.295 hybrid contribution 1.334 0.075 0.925 1.625 sum -11.783 4.549 -11.017 16.760 Atomic orbital electron populations 1.23737 0.94798 1.02362 1.03105 1.22108 0.95390 0.96056 0.99046 1.20778 0.97240 0.94786 0.98812 1.21557 0.97081 0.97151 0.98864 1.21003 0.94101 0.95211 0.98310 1.22158 0.94272 0.91025 0.99062 1.61834 1.19525 1.39941 1.01795 1.19356 0.88931 0.95682 0.87654 1.21505 1.19775 0.96925 1.15678 0.91209 1.25862 0.97230 1.01459 0.95257 1.70100 1.30950 1.36486 1.20657 0.85487 0.78781 0.79843 0.77180 1.19911 1.21206 1.18827 1.22139 1.02172 0.94864 0.91323 1.23056 0.97535 1.02584 0.94689 1.23080 0.95866 0.99203 1.02995 1.21346 0.96301 0.98095 0.97624 1.20775 0.97284 0.94893 0.98952 0.87588 0.88200 0.90279 0.90439 0.92525 0.91525 0.90598 0.96574 0.92976 1.02045 0.98759 0.93027 0.91708 0.88678 0.87080 0.89084 0.89172 0.92249 0.93729 0.91300 0.90626 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -3.71 13.99 67.79 0.95 -2.77 16 2 C -0.13 -2.61 5.35 -16.12 -0.09 -2.69 16 3 C -0.08 -1.53 6.03 30.10 0.18 -1.34 16 4 C -0.11 -2.52 5.21 30.66 0.16 -2.36 16 5 C -0.07 -1.90 1.93 -10.82 -0.02 -1.92 16 6 C 0.06 2.30 4.32 86.30 0.37 2.68 16 7 N -0.51 -21.77 3.95 -875.53 -3.46 -25.23 16 8 C 0.21 11.34 4.77 85.56 0.41 11.74 16 9 C -0.50 -28.13 7.80 25.60 0.20 -27.93 16 10 H 0.07 3.83 5.78 -2.91 -0.02 3.81 16 11 C 0.00 -0.07 5.46 84.65 0.46 0.40 16 12 N -0.94 -57.47 13.29 21.45 0.28 -57.18 16 13 Si 0.96 44.65 29.54 68.60 2.03 46.67 16 14 H -0.27 -12.27 7.11 99.48 0.71 -11.57 16 15 H -0.29 -13.13 7.11 99.48 0.71 -12.42 16 16 H -0.26 -11.76 7.11 99.48 0.71 -11.05 16 17 C 0.00 0.16 4.18 44.91 0.19 0.34 16 18 C -0.14 -4.27 9.19 30.62 0.28 -3.99 16 19 C -0.17 -6.51 9.48 30.62 0.29 -6.22 16 20 C -0.10 -2.72 5.13 30.60 0.16 -2.56 16 21 C -0.08 -1.85 6.03 30.05 0.18 -1.67 16 22 H 0.11 1.65 7.92 -2.91 -0.02 1.63 16 23 H 0.10 1.70 7.92 -2.91 -0.02 1.67 16 24 H 0.08 1.30 7.89 -2.38 -0.02 1.28 16 25 H 0.08 1.40 8.14 -2.39 -0.02 1.38 16 26 H 0.06 1.37 8.14 -2.39 -0.02 1.35 16 27 H 0.07 1.47 8.14 -2.38 -0.02 1.45 16 28 H 0.08 2.11 6.30 -2.39 -0.02 2.09 16 29 H 0.02 0.59 8.12 -2.39 -0.02 0.57 16 30 H 0.05 2.02 7.83 -2.39 -0.02 2.00 16 31 H -0.04 -2.29 7.99 -2.39 -0.02 -2.31 16 32 H -0.01 -0.33 7.73 -2.38 -0.02 -0.35 16 33 H 0.26 15.08 8.31 -92.71 -0.77 14.31 16 34 H 0.07 2.48 8.14 -2.39 -0.02 2.46 16 35 H 0.09 2.88 7.60 -2.39 -0.02 2.86 16 36 H 0.11 2.67 8.14 -2.39 -0.02 2.65 16 37 H 0.09 3.11 8.14 -2.39 -0.02 3.09 16 38 H 0.09 3.88 5.42 -2.39 -0.01 3.87 16 39 H 0.06 1.95 7.10 -2.39 -0.02 1.94 16 40 H 0.04 1.33 8.14 -2.39 -0.02 1.31 16 41 H 0.07 1.47 7.89 -2.38 -0.02 1.45 16 42 H 0.08 1.62 8.14 -2.39 -0.02 1.60 16 Total: -1.00 -62.49 325.89 3.53 -58.96 By element: Atomic # 1 Polarization: 14.12 SS G_CDS: 0.96 Total: 15.07 kcal Atomic # 6 Polarization: -42.02 SS G_CDS: 3.72 Total: -38.30 kcal Atomic # 7 Polarization: -79.23 SS G_CDS: -3.17 Total: -82.41 kcal Atomic # 14 Polarization: 44.65 SS G_CDS: 2.03 Total: 46.67 kcal Total: -62.49 3.53 -58.96 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000724595120.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.441 kcal (2) G-P(sol) polarization free energy of solvation -62.486 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.955 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.530 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.956 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.485 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds