Wall clock time and date at job start Mon Mar 30 2020 06:58:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17407 * 1 3 3 C 1.47192 * 179.97438 * 2 1 4 4 N 1.46496 * 109.47392 * 36.15877 * 3 2 1 5 5 C 1.36940 * 120.00336 * 95.35757 * 4 3 2 6 6 H 1.08000 * 120.00412 * 162.06981 * 5 4 3 7 7 C 1.38817 * 119.99712 * 342.07735 * 5 4 3 8 8 N 1.31622 * 119.99759 * 343.03536 * 7 5 4 9 9 Si 1.86796 * 120.00051 * 163.03502 * 7 5 4 10 10 H 1.48499 * 109.47319 * 359.97438 * 9 7 5 11 11 H 1.48500 * 109.46947 * 120.00167 * 9 7 5 12 12 H 1.48506 * 109.47283 * 240.00099 * 9 7 5 13 13 C 1.46502 * 120.00266 * 275.35761 * 4 3 2 14 14 C 1.52998 * 109.47063 * 89.99839 * 13 4 3 15 15 H 1.09000 * 109.47071 * 305.00155 * 14 13 4 16 16 C 1.53002 * 109.47075 * 65.00081 * 14 13 4 17 17 C 1.53003 * 109.46841 * 179.97438 * 16 14 13 18 18 C 1.52994 * 109.47406 * 300.00069 * 17 16 14 19 19 C 1.53002 * 109.47177 * 60.00137 * 18 17 16 20 20 C 1.52998 * 109.47075 * 299.99998 * 19 18 17 21 21 C 1.53003 * 109.47179 * 299.99724 * 20 19 18 22 22 C 1.53005 * 109.47338 * 179.97438 * 20 19 18 23 23 H 4.40630 * 5.51400 * 180.02562 * 4 1 2 24 24 H 1.09001 * 109.47157 * 156.15818 * 3 2 1 25 25 H 1.09003 * 109.47050 * 276.15842 * 3 2 1 26 26 H 0.96995 * 119.99690 * 180.02562 * 8 7 5 27 27 H 1.08999 * 109.47345 * 210.00078 * 13 4 3 28 28 H 1.09004 * 109.46524 * 330.00168 * 13 4 3 29 29 H 1.08992 * 109.47108 * 299.99890 * 16 14 13 30 30 H 1.09006 * 109.46508 * 60.00443 * 16 14 13 31 31 H 1.08993 * 109.47283 * 60.00430 * 17 16 14 32 32 H 1.09005 * 109.46333 * 180.02562 * 17 16 14 33 33 H 1.08997 * 109.47590 * 180.02562 * 18 17 16 34 34 H 1.09007 * 109.47243 * 300.00521 * 18 17 16 35 35 H 1.09000 * 109.47111 * 59.99900 * 19 18 17 36 36 H 1.09001 * 109.47159 * 179.97438 * 19 18 17 37 37 H 1.09007 * 109.46715 * 179.97438 * 21 20 19 38 38 H 1.08998 * 109.46817 * 299.99867 * 21 20 19 39 39 H 1.09002 * 109.46862 * 60.00349 * 21 20 19 40 40 H 1.08993 * 109.47078 * 300.00371 * 22 20 19 41 41 H 1.09001 * 109.46648 * 60.00049 * 22 20 19 42 42 H 1.08999 * 109.47491 * 179.97438 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1741 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1349 -1.1142 -0.8149 5 6 3.4675 -0.9089 -2.1273 6 1 4.0870 -1.6255 -2.6460 7 6 3.0084 0.2206 -2.7911 8 7 2.0049 0.9130 -2.2951 9 14 3.8148 0.7577 -4.3881 10 1 4.9124 -0.1825 -4.7292 11 1 2.8052 0.7567 -5.4772 12 1 4.3682 2.1264 -4.2274 13 6 3.2680 -2.4490 -0.2259 14 6 1.9605 -3.2213 -0.4120 15 1 1.1348 -2.6434 0.0032 16 6 1.7168 -3.4596 -1.9036 17 6 0.4095 -4.2325 -2.0897 18 6 0.5051 -5.5778 -1.3672 19 6 0.7487 -5.3395 0.1244 20 6 2.0560 -4.5666 0.3105 21 6 3.2152 -5.3774 -0.2724 22 6 2.2994 -4.3277 1.8021 23 1 -1.0497 -0.0002 -0.0004 24 1 3.0089 0.9408 -0.4154 25 1 3.0094 -0.1094 1.0218 26 1 1.6839 1.7020 -2.7591 27 1 4.0795 -2.9844 -0.7187 28 1 3.4870 -2.3564 0.8379 29 1 1.6491 -2.5013 -2.4183 30 1 2.5425 -4.0377 -2.3187 31 1 -0.4163 -3.6550 -1.6744 32 1 0.2363 -4.4027 -3.1523 33 1 -0.4260 -6.1286 -1.5001 34 1 1.3310 -6.1554 -1.7825 35 1 -0.0771 -4.7619 0.5397 36 1 0.8164 -6.2979 0.6392 37 1 4.1465 -4.8265 -0.1402 38 1 3.2833 -6.3358 0.2424 39 1 3.0417 -5.5472 -1.3351 40 1 1.4735 -3.7500 2.2170 41 1 2.3673 -5.2860 2.3171 42 1 3.2309 -3.7775 1.9347 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000852009737.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:58:08 Heat of formation + Delta-G solvation = 53.915634 kcal Electronic energy + Delta-G solvation = -19825.985286 eV Core-core repulsion = 17193.446329 eV Total energy + Delta-G solvation = -2632.538957 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 249.179 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -39.41370 -35.83117 -32.91555 -31.68640 -31.45044 -29.71660 -27.03990 -26.47130 -25.88741 -24.88585 -22.15421 -20.61596 -20.06376 -17.60599 -17.32781 -16.35353 -15.03938 -14.89866 -14.31640 -14.00915 -13.75077 -13.55160 -13.10203 -12.81775 -12.67424 -12.42575 -11.98259 -11.51705 -11.39949 -11.28986 -11.14929 -11.00452 -10.99685 -10.78106 -10.60264 -10.50318 -10.18921 -10.09982 -9.92501 -9.56874 -9.35899 -9.20625 -8.78387 -8.64500 -8.27975 -6.86527 -5.70375 -3.12480 3.38880 3.47562 3.48561 4.27803 4.48394 4.60226 5.09348 5.13018 5.17403 5.44512 5.52266 5.64833 5.73157 5.77658 5.85536 5.92765 5.97624 6.00960 6.07313 6.11498 6.17167 6.23556 6.32371 6.35717 6.43346 6.46032 6.54515 6.62097 6.68352 6.72402 6.77249 6.87774 6.99512 7.05001 7.34661 7.36953 7.50857 7.55129 7.80369 8.37836 9.20061 9.29696 9.86168 10.32885 11.32529 Molecular weight = 249.18amu Principal moments of inertia in cm(-1) A = 0.022765 B = 0.008190 C = 0.007588 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1229.653961 B = 3417.926941 C = 3689.187199 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.313 4.313 2 C -0.082 4.082 3 C 0.267 3.733 4 N -0.587 5.587 5 C -0.247 4.247 6 H 0.073 0.927 7 C -0.001 4.001 8 N -0.894 5.894 9 Si 0.898 3.102 10 H -0.279 1.279 11 H -0.293 1.293 12 H -0.291 1.291 13 C 0.150 3.850 14 C -0.091 4.091 15 H 0.065 0.935 16 C -0.106 4.106 17 C -0.118 4.118 18 C -0.118 4.118 19 C -0.104 4.104 20 C -0.061 4.061 21 C -0.142 4.142 22 C -0.140 4.140 23 H 0.186 0.814 24 H 0.099 0.901 25 H 0.031 0.969 26 H 0.252 0.748 27 H 0.047 0.953 28 H 0.039 0.961 29 H 0.091 0.909 30 H 0.047 0.953 31 H 0.054 0.946 32 H 0.049 0.951 33 H 0.048 0.952 34 H 0.059 0.941 35 H 0.056 0.944 36 H 0.050 0.950 37 H 0.056 0.944 38 H 0.041 0.959 39 H 0.059 0.941 40 H 0.050 0.950 41 H 0.044 0.956 42 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.418 -9.945 5.293 11.274 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.332 4.332 2 C -0.085 4.085 3 C 0.142 3.858 4 N -0.307 5.307 5 C -0.376 4.376 6 H 0.091 0.909 7 C -0.199 4.199 8 N -0.538 5.538 9 Si 0.728 3.272 10 H -0.205 1.205 11 H -0.220 1.220 12 H -0.217 1.217 13 C 0.024 3.976 14 C -0.111 4.111 15 H 0.083 0.917 16 C -0.143 4.143 17 C -0.155 4.155 18 C -0.155 4.155 19 C -0.141 4.141 20 C -0.062 4.062 21 C -0.199 4.199 22 C -0.197 4.197 23 H 0.203 0.797 24 H 0.117 0.883 25 H 0.049 0.951 26 H 0.062 0.938 27 H 0.065 0.935 28 H 0.057 0.943 29 H 0.109 0.891 30 H 0.066 0.934 31 H 0.073 0.927 32 H 0.068 0.932 33 H 0.067 0.933 34 H 0.078 0.922 35 H 0.074 0.926 36 H 0.069 0.931 37 H 0.075 0.925 38 H 0.060 0.940 39 H 0.078 0.922 40 H 0.069 0.931 41 H 0.063 0.937 42 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -0.412 -9.794 5.203 11.098 hybrid contribution -0.261 0.321 -1.099 1.174 sum -0.674 -9.473 4.105 10.346 Atomic orbital electron populations 1.24088 0.95259 1.05710 1.08188 1.24306 0.95224 0.95444 0.93551 1.17841 0.82830 0.93706 0.91455 1.44151 1.74835 1.02620 1.09084 1.19198 1.24529 1.06443 0.87462 0.90920 1.24903 0.97006 1.00050 0.97991 1.70066 1.24489 1.19501 1.39789 0.86287 0.78843 0.78410 0.83639 1.20465 1.22050 1.21748 1.21095 0.94633 0.86059 0.95831 1.21757 1.00907 0.93266 0.95220 0.91651 1.21523 0.94838 1.01224 0.96715 1.21542 0.99518 0.95637 0.98826 1.21564 1.00349 0.97764 0.95837 1.21543 0.97502 0.99000 0.96076 1.20568 0.94435 0.96342 0.94862 1.21974 0.98229 0.98667 1.01001 1.21900 1.01760 1.00489 0.95597 0.79686 0.88340 0.95149 0.93751 0.93491 0.94254 0.89075 0.93427 0.92736 0.93236 0.93343 0.92228 0.92552 0.93130 0.92527 0.93973 0.92204 0.93081 0.93731 0.92304 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.31 -7.21 19.23 29.55 0.57 -6.64 16 2 C -0.08 -1.99 10.38 -37.13 -0.39 -2.37 16 3 C 0.27 6.29 5.45 -6.83 -0.04 6.25 16 4 N -0.59 -13.82 2.38 -176.58 -0.42 -14.24 16 5 C -0.25 -6.35 7.63 -15.06 -0.11 -6.47 16 6 H 0.07 1.87 7.87 -52.49 -0.41 1.46 16 7 C 0.00 -0.04 4.98 -17.43 -0.09 -0.12 16 8 N -0.89 -24.90 9.20 55.49 0.51 -24.39 16 9 Si 0.90 21.40 29.59 -169.99 -5.03 16.37 16 10 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 11 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 12 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 13 C 0.15 2.96 4.48 -4.04 -0.02 2.95 16 14 C -0.09 -1.66 1.61 -90.62 -0.15 -1.81 16 15 H 0.07 1.38 7.01 -51.93 -0.36 1.02 16 16 C -0.11 -2.04 4.49 -26.73 -0.12 -2.16 16 17 C -0.12 -1.98 5.92 -26.73 -0.16 -2.14 16 18 C -0.12 -1.67 5.65 -26.73 -0.15 -1.82 16 19 C -0.10 -1.46 4.73 -26.73 -0.13 -1.59 16 20 C -0.06 -0.92 0.54 -154.50 -0.08 -1.00 16 21 C -0.14 -1.97 7.43 37.16 0.28 -1.70 16 22 C -0.14 -1.94 8.13 37.16 0.30 -1.64 16 23 H 0.19 3.66 7.80 -54.10 -0.42 3.24 16 24 H 0.10 2.54 6.36 -51.93 -0.33 2.21 16 25 H 0.03 0.64 7.97 -51.93 -0.41 0.23 16 26 H 0.25 6.99 8.31 -40.82 -0.34 6.65 16 27 H 0.05 0.92 6.59 -51.93 -0.34 0.58 16 28 H 0.04 0.73 5.98 -51.93 -0.31 0.42 16 29 H 0.09 2.18 6.35 -51.93 -0.33 1.85 16 30 H 0.05 0.89 6.43 -51.93 -0.33 0.56 16 31 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 32 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 33 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 34 H 0.06 0.82 6.43 -51.93 -0.33 0.48 16 35 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 36 H 0.05 0.64 8.14 -51.93 -0.42 0.21 16 37 H 0.06 0.80 6.54 -51.93 -0.34 0.46 16 38 H 0.04 0.52 8.14 -51.93 -0.42 0.09 16 39 H 0.06 0.86 4.81 -51.93 -0.25 0.61 16 40 H 0.05 0.73 8.14 -51.93 -0.42 0.30 16 41 H 0.04 0.54 8.14 -51.93 -0.42 0.12 16 42 H 0.06 0.82 6.32 -51.93 -0.33 0.49 16 LS Contribution 313.02 15.07 4.72 4.72 Total: -1.00 -27.28 313.02 -7.53 -34.81 By element: Atomic # 1 Polarization: 10.02 SS G_CDS: -7.03 Total: 2.99 kcal Atomic # 6 Polarization: -19.97 SS G_CDS: -0.28 Total: -20.25 kcal Atomic # 7 Polarization: -38.73 SS G_CDS: 0.09 Total: -38.64 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -5.03 Total: 16.37 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -27.28 -7.53 -34.81 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000852009737.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.723 kcal (2) G-P(sol) polarization free energy of solvation -27.278 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.445 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.529 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.808 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.916 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds