Wall clock time and date at job start Mon Mar 30 2020 06:58:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17407 * 1 3 3 C 1.47192 * 179.97438 * 2 1 4 4 N 1.46496 * 109.47392 * 36.15877 * 3 2 1 5 5 C 1.36940 * 120.00336 * 95.35757 * 4 3 2 6 6 H 1.08000 * 120.00412 * 162.06981 * 5 4 3 7 7 C 1.38817 * 119.99712 * 342.07735 * 5 4 3 8 8 N 1.31622 * 119.99759 * 343.03536 * 7 5 4 9 9 Si 1.86796 * 120.00051 * 163.03502 * 7 5 4 10 10 H 1.48499 * 109.47319 * 359.97438 * 9 7 5 11 11 H 1.48500 * 109.46947 * 120.00167 * 9 7 5 12 12 H 1.48506 * 109.47283 * 240.00099 * 9 7 5 13 13 C 1.46502 * 120.00266 * 275.35761 * 4 3 2 14 14 C 1.52998 * 109.47063 * 89.99839 * 13 4 3 15 15 H 1.09000 * 109.47071 * 305.00155 * 14 13 4 16 16 C 1.53002 * 109.47075 * 65.00081 * 14 13 4 17 17 C 1.53003 * 109.46841 * 179.97438 * 16 14 13 18 18 C 1.52994 * 109.47406 * 300.00069 * 17 16 14 19 19 C 1.53002 * 109.47177 * 60.00137 * 18 17 16 20 20 C 1.52998 * 109.47075 * 299.99998 * 19 18 17 21 21 C 1.53003 * 109.47179 * 299.99724 * 20 19 18 22 22 C 1.53005 * 109.47338 * 179.97438 * 20 19 18 23 23 H 4.40630 * 5.51400 * 180.02562 * 4 1 2 24 24 H 1.09001 * 109.47157 * 156.15818 * 3 2 1 25 25 H 1.09003 * 109.47050 * 276.15842 * 3 2 1 26 26 H 0.96995 * 119.99690 * 180.02562 * 8 7 5 27 27 H 1.08999 * 109.47345 * 210.00078 * 13 4 3 28 28 H 1.09004 * 109.46524 * 330.00168 * 13 4 3 29 29 H 1.08992 * 109.47108 * 299.99890 * 16 14 13 30 30 H 1.09006 * 109.46508 * 60.00443 * 16 14 13 31 31 H 1.08993 * 109.47283 * 60.00430 * 17 16 14 32 32 H 1.09005 * 109.46333 * 180.02562 * 17 16 14 33 33 H 1.08997 * 109.47590 * 180.02562 * 18 17 16 34 34 H 1.09007 * 109.47243 * 300.00521 * 18 17 16 35 35 H 1.09000 * 109.47111 * 59.99900 * 19 18 17 36 36 H 1.09001 * 109.47159 * 179.97438 * 19 18 17 37 37 H 1.09007 * 109.46715 * 179.97438 * 21 20 19 38 38 H 1.08998 * 109.46817 * 299.99867 * 21 20 19 39 39 H 1.09002 * 109.46862 * 60.00349 * 21 20 19 40 40 H 1.08993 * 109.47078 * 300.00371 * 22 20 19 41 41 H 1.09001 * 109.46648 * 60.00049 * 22 20 19 42 42 H 1.08999 * 109.47491 * 179.97438 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1741 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1349 -1.1142 -0.8149 5 6 3.4675 -0.9089 -2.1273 6 1 4.0870 -1.6255 -2.6460 7 6 3.0084 0.2206 -2.7911 8 7 2.0049 0.9130 -2.2951 9 14 3.8148 0.7577 -4.3881 10 1 4.9124 -0.1825 -4.7292 11 1 2.8052 0.7567 -5.4772 12 1 4.3682 2.1264 -4.2274 13 6 3.2680 -2.4490 -0.2259 14 6 1.9605 -3.2213 -0.4120 15 1 1.1348 -2.6434 0.0032 16 6 1.7168 -3.4596 -1.9036 17 6 0.4095 -4.2325 -2.0897 18 6 0.5051 -5.5778 -1.3672 19 6 0.7487 -5.3395 0.1244 20 6 2.0560 -4.5666 0.3105 21 6 3.2152 -5.3774 -0.2724 22 6 2.2994 -4.3277 1.8021 23 1 -1.0497 -0.0002 -0.0004 24 1 3.0089 0.9408 -0.4154 25 1 3.0094 -0.1094 1.0218 26 1 1.6839 1.7020 -2.7591 27 1 4.0795 -2.9844 -0.7187 28 1 3.4870 -2.3564 0.8379 29 1 1.6491 -2.5013 -2.4183 30 1 2.5425 -4.0377 -2.3187 31 1 -0.4163 -3.6550 -1.6744 32 1 0.2363 -4.4027 -3.1523 33 1 -0.4260 -6.1286 -1.5001 34 1 1.3310 -6.1554 -1.7825 35 1 -0.0771 -4.7619 0.5397 36 1 0.8164 -6.2979 0.6392 37 1 4.1465 -4.8265 -0.1402 38 1 3.2833 -6.3358 0.2424 39 1 3.0417 -5.5472 -1.3351 40 1 1.4735 -3.7500 2.2170 41 1 2.3673 -5.2860 2.3171 42 1 3.2309 -3.7775 1.9347 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000852009737.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:58:07 Heat of formation + Delta-G solvation = 41.745076 kcal Electronic energy + Delta-G solvation = -19826.513041 eV Core-core repulsion = 17193.446329 eV Total energy + Delta-G solvation = -2633.066712 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 249.179 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.76048 -37.61613 -34.22931 -33.43610 -33.29071 -31.35232 -28.18666 -27.99735 -27.69044 -26.34229 -23.85519 -22.04480 -21.49769 -19.25592 -18.91657 -18.17875 -16.90445 -16.23106 -15.80481 -15.55082 -15.31225 -14.96538 -14.75638 -14.43528 -14.11155 -13.73327 -13.39301 -13.16313 -12.92245 -12.84898 -12.67089 -12.61497 -12.36055 -12.21394 -12.17726 -12.04153 -11.83527 -11.68660 -11.46448 -11.01213 -10.83210 -10.69039 -10.55062 -10.45348 -10.17379 -8.78433 -7.73849 -5.15267 1.45973 1.49889 1.57449 2.40498 2.57978 2.66755 3.37924 3.80019 3.87381 3.95467 4.08562 4.17739 4.32560 4.34169 4.55151 4.56431 4.69152 4.73768 4.83295 4.90127 4.91798 4.95355 4.96931 5.08240 5.12804 5.17747 5.20211 5.31211 5.31879 5.38439 5.40523 5.46573 5.49330 5.58980 5.69062 5.72112 5.75224 5.87334 5.90676 6.38912 7.19798 7.42917 7.93192 8.35630 9.27278 Molecular weight = 249.18amu Principal moments of inertia in cm(-1) A = 0.022765 B = 0.008190 C = 0.007588 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1229.653961 B = 3417.926941 C = 3689.187199 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.312 4.312 2 C -0.110 4.110 3 C 0.269 3.731 4 N -0.598 5.598 5 C -0.237 4.237 6 H 0.071 0.929 7 C -0.051 4.051 8 N -0.918 5.918 9 Si 0.952 3.048 10 H -0.269 1.269 11 H -0.304 1.304 12 H -0.294 1.294 13 C 0.149 3.851 14 C -0.079 4.079 15 H 0.034 0.966 16 C -0.098 4.098 17 C -0.115 4.115 18 C -0.111 4.111 19 C -0.102 4.102 20 C -0.058 4.058 21 C -0.139 4.139 22 C -0.138 4.138 23 H 0.212 0.788 24 H 0.072 0.928 25 H 0.056 0.944 26 H 0.242 0.758 27 H 0.050 0.950 28 H 0.054 0.946 29 H 0.037 0.963 30 H 0.052 0.948 31 H 0.037 0.963 32 H 0.052 0.948 33 H 0.067 0.933 34 H 0.070 0.930 35 H 0.046 0.954 36 H 0.077 0.923 37 H 0.051 0.949 38 H 0.066 0.934 39 H 0.053 0.947 40 H 0.041 0.959 41 H 0.069 0.931 42 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.137 -12.384 6.111 13.810 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.331 4.331 2 C -0.113 4.113 3 C 0.143 3.857 4 N -0.318 5.318 5 C -0.368 4.368 6 H 0.089 0.911 7 C -0.246 4.246 8 N -0.565 5.565 9 Si 0.783 3.217 10 H -0.194 1.194 11 H -0.232 1.232 12 H -0.222 1.222 13 C 0.024 3.976 14 C -0.099 4.099 15 H 0.053 0.947 16 C -0.136 4.136 17 C -0.153 4.153 18 C -0.148 4.148 19 C -0.139 4.139 20 C -0.059 4.059 21 C -0.196 4.196 22 C -0.195 4.195 23 H 0.229 0.771 24 H 0.089 0.911 25 H 0.074 0.926 26 H 0.051 0.949 27 H 0.068 0.932 28 H 0.073 0.927 29 H 0.056 0.944 30 H 0.071 0.929 31 H 0.056 0.944 32 H 0.070 0.930 33 H 0.086 0.914 34 H 0.089 0.911 35 H 0.064 0.936 36 H 0.096 0.904 37 H 0.070 0.930 38 H 0.085 0.915 39 H 0.072 0.928 40 H 0.060 0.940 41 H 0.088 0.912 42 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -0.114 -12.260 6.036 13.666 hybrid contribution -0.352 1.046 -1.325 1.724 sum -0.466 -11.215 4.711 12.173 Atomic orbital electron populations 1.24801 0.96218 1.04740 1.07315 1.24618 0.95921 0.96363 0.94396 1.17761 0.82839 0.92669 0.92403 1.44315 1.74752 1.04231 1.08506 1.19349 1.23282 1.05814 0.88307 0.91125 1.25463 0.97833 1.00710 1.00581 1.70231 1.25876 1.19633 1.40743 0.85422 0.77912 0.77828 0.80576 1.19394 1.23174 1.22162 1.21241 0.95471 0.84498 0.96429 1.21535 0.98636 0.94990 0.94787 0.94715 1.21362 0.96481 0.98869 0.96892 1.21495 0.97345 0.96943 0.99494 1.21525 1.01846 0.95904 0.95565 1.21543 0.96374 0.99923 0.96099 1.20530 0.95786 0.94293 0.95271 1.21943 0.97228 0.99559 1.00842 1.21871 1.01214 1.01699 0.94698 0.77069 0.91053 0.92640 0.94857 0.93181 0.92736 0.94378 0.92943 0.94438 0.92952 0.91429 0.91136 0.93553 0.90428 0.93006 0.91471 0.92783 0.93965 0.91247 0.92579 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.31 -14.43 19.23 74.32 1.43 -13.00 16 2 C -0.11 -5.41 10.38 31.12 0.32 -5.08 16 3 C 0.27 12.88 5.45 84.57 0.46 13.34 16 4 N -0.60 -28.48 2.38 -712.56 -1.69 -30.17 16 5 C -0.24 -12.40 7.63 84.03 0.64 -11.76 16 6 H 0.07 3.66 7.87 -2.91 -0.02 3.64 16 7 C -0.05 -2.76 4.98 84.86 0.42 -2.34 16 8 N -0.92 -52.74 9.20 21.65 0.20 -52.54 16 9 Si 0.95 44.99 29.59 68.60 2.03 47.02 16 10 H -0.27 -12.12 7.11 99.48 0.71 -11.42 16 11 H -0.30 -14.77 7.11 99.48 0.71 -14.06 16 12 H -0.29 -13.98 7.11 99.48 0.71 -13.27 16 13 C 0.15 5.78 4.48 86.38 0.39 6.17 16 14 C -0.08 -2.85 1.61 -10.79 -0.02 -2.87 16 15 H 0.03 1.47 7.01 -2.39 -0.02 1.46 16 16 C -0.10 -3.81 4.49 30.60 0.14 -3.68 16 17 C -0.12 -3.80 5.92 30.59 0.18 -3.62 16 18 C -0.11 -2.84 5.65 30.59 0.17 -2.66 16 19 C -0.10 -2.55 4.73 30.59 0.14 -2.40 16 20 C -0.06 -1.59 0.54 -52.18 -0.03 -1.62 16 21 C -0.14 -3.40 7.43 71.98 0.53 -2.87 16 22 C -0.14 -3.40 8.13 71.98 0.59 -2.82 16 23 H 0.21 8.23 7.80 -4.43 -0.03 8.19 16 24 H 0.07 3.81 6.36 -2.39 -0.02 3.79 16 25 H 0.06 2.32 7.97 -2.39 -0.02 2.30 16 26 H 0.24 13.89 8.31 -92.71 -0.77 13.12 16 27 H 0.05 1.91 6.59 -2.39 -0.02 1.90 16 28 H 0.05 1.95 5.98 -2.39 -0.01 1.93 16 29 H 0.04 1.87 6.35 -2.39 -0.02 1.86 16 30 H 0.05 1.94 6.43 -2.38 -0.02 1.92 16 31 H 0.04 1.34 8.14 -2.39 -0.02 1.32 16 32 H 0.05 1.66 8.14 -2.38 -0.02 1.64 16 33 H 0.07 1.50 8.14 -2.39 -0.02 1.48 16 34 H 0.07 1.68 6.43 -2.38 -0.02 1.67 16 35 H 0.05 1.26 8.14 -2.39 -0.02 1.24 16 36 H 0.08 1.58 8.14 -2.39 -0.02 1.56 16 37 H 0.05 1.32 6.54 -2.38 -0.02 1.30 16 38 H 0.07 1.34 8.14 -2.39 -0.02 1.32 16 39 H 0.05 1.39 4.81 -2.39 -0.01 1.38 16 40 H 0.04 1.11 8.14 -2.39 -0.02 1.09 16 41 H 0.07 1.39 8.14 -2.39 -0.02 1.37 16 42 H 0.06 1.41 6.32 -2.39 -0.02 1.39 16 Total: -1.00 -59.67 313.02 6.88 -52.79 By element: Atomic # 1 Polarization: 17.15 SS G_CDS: 0.97 Total: 18.12 kcal Atomic # 6 Polarization: -40.58 SS G_CDS: 5.38 Total: -35.21 kcal Atomic # 7 Polarization: -81.22 SS G_CDS: -1.50 Total: -82.72 kcal Atomic # 14 Polarization: 44.99 SS G_CDS: 2.03 Total: 47.02 kcal Total: -59.67 6.88 -52.79 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000852009737.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.536 kcal (2) G-P(sol) polarization free energy of solvation -59.668 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.867 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.878 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.790 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.745 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds