Wall clock time and date at job start Mon Mar 30 2020 06:58:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17396 * 1 3 3 C 1.47203 * 179.97438 * 2 1 4 4 N 1.46501 * 109.47056 * 353.11016 * 3 2 1 5 5 C 1.36934 * 120.00052 * 264.25020 * 4 3 2 6 6 H 1.08004 * 119.99907 * 196.84122 * 5 4 3 7 7 C 1.38812 * 120.00348 * 16.83158 * 5 4 3 8 8 N 1.31626 * 119.99325 * 22.19056 * 7 5 4 9 9 Si 1.86797 * 120.00426 * 202.18798 * 7 5 4 10 10 H 1.48498 * 109.46971 * 359.97438 * 9 7 5 11 11 H 1.48493 * 109.47327 * 120.00173 * 9 7 5 12 12 H 1.48503 * 109.47039 * 240.00252 * 9 7 5 13 13 C 1.46497 * 119.99977 * 84.25152 * 4 3 2 14 14 C 1.53002 * 109.47224 * 269.99836 * 13 4 3 15 15 H 1.09003 * 109.46531 * 54.99831 * 14 13 4 16 16 C 1.52998 * 109.47027 * 294.99988 * 14 13 4 17 17 C 1.52999 * 109.47413 * 179.97438 * 16 14 13 18 18 C 1.53001 * 109.46790 * 59.99704 * 17 16 14 19 19 C 1.52998 * 109.47384 * 300.00314 * 18 17 16 20 20 C 1.52995 * 109.47094 * 59.99948 * 19 18 17 21 21 C 1.52998 * 109.47094 * 180.02562 * 20 19 18 22 22 C 1.53002 * 109.47483 * 60.00035 * 20 19 18 23 23 H 4.40637 * 5.51301 * 179.97438 * 4 1 2 24 24 H 1.09003 * 109.47055 * 233.11000 * 3 2 1 25 25 H 1.08999 * 109.47301 * 113.11267 * 3 2 1 26 26 H 0.97007 * 119.99310 * 179.97438 * 8 7 5 27 27 H 1.08997 * 109.47388 * 149.99756 * 13 4 3 28 28 H 1.09000 * 109.47113 * 29.99793 * 13 4 3 29 29 H 1.09002 * 109.47313 * 299.99901 * 16 14 13 30 30 H 1.09003 * 109.47199 * 59.99787 * 16 14 13 31 31 H 1.09002 * 109.47092 * 300.00394 * 17 16 14 32 32 H 1.08993 * 109.47296 * 179.97438 * 17 16 14 33 33 H 1.09005 * 109.46895 * 180.02562 * 18 17 16 34 34 H 1.09002 * 109.46740 * 60.00474 * 18 17 16 35 35 H 1.09002 * 109.47313 * 299.99809 * 19 18 17 36 36 H 1.09003 * 109.47199 * 179.97438 * 19 18 17 37 37 H 1.09005 * 109.47315 * 180.02562 * 21 20 19 38 38 H 1.09003 * 109.47199 * 299.99974 * 21 20 19 39 39 H 1.09002 * 109.47313 * 59.99861 * 21 20 19 40 40 H 1.09003 * 109.46985 * 300.00546 * 22 20 19 41 41 H 1.08998 * 109.47054 * 59.99470 * 22 20 19 42 42 H 1.08993 * 109.47729 * 180.02562 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1349 -1.3704 0.1657 5 6 3.4754 -1.8302 1.4098 6 1 4.0803 -2.7194 1.5100 7 6 3.0432 -1.1536 2.5422 8 7 1.9892 -0.3679 2.4770 9 14 3.9573 -1.3581 4.1583 10 1 5.0981 -2.2894 3.9673 11 1 4.4656 -0.0380 4.6100 12 1 3.0345 -1.9102 5.1825 13 6 3.2597 -2.2494 -0.9996 14 6 1.9501 -3.0137 -1.2044 15 1 1.1245 -2.3060 -1.2802 16 6 1.7137 -3.9480 -0.0161 17 6 0.4039 -4.7118 -0.2206 18 6 0.4891 -5.5349 -1.5075 19 6 0.7256 -4.6007 -2.6958 20 6 2.0353 -3.8368 -2.4913 21 6 2.2715 -2.9021 -3.6793 22 6 3.1940 -4.8304 -2.3853 23 1 -1.0498 -0.0003 0.0002 24 1 3.0090 0.6177 0.8219 25 1 3.0092 0.4042 -0.9452 26 1 1.6869 0.1047 3.2685 27 1 4.0717 -2.9576 -0.8353 28 1 3.4733 -1.6508 -1.8851 29 1 2.5393 -4.6556 0.0597 30 1 1.6526 -3.3615 0.9006 31 1 -0.4216 -4.0039 -0.2961 32 1 0.2357 -5.3777 0.6257 33 1 -0.4442 -6.0788 -1.6534 34 1 1.3146 -6.2428 -1.4319 35 1 -0.0999 -3.8928 -2.7713 36 1 0.7867 -5.1871 -3.6126 37 1 3.2049 -2.3582 -3.5338 38 1 2.3320 -3.4882 -4.5963 39 1 1.4460 -2.1942 -3.7544 40 1 3.0256 -5.4961 -1.5387 41 1 3.2547 -5.4169 -3.3020 42 1 4.1271 -4.2863 -2.2391 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000852009738.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:58:10 Heat of formation + Delta-G solvation = 53.541044 kcal Electronic energy + Delta-G solvation = -19819.002400 eV Core-core repulsion = 17186.447199 eV Total energy + Delta-G solvation = -2632.555201 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 249.179 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -39.41275 -35.83182 -32.91190 -31.68232 -31.48191 -29.72820 -27.04087 -26.48124 -25.88406 -24.89039 -22.16011 -20.61392 -20.06199 -17.60471 -17.33710 -16.35383 -15.02550 -14.89743 -14.31206 -14.01048 -13.76014 -13.56082 -13.11204 -12.82874 -12.68046 -12.42404 -11.98413 -11.52323 -11.40361 -11.33131 -11.14328 -11.01026 -10.98961 -10.77535 -10.60280 -10.50107 -10.20305 -10.09781 -9.92058 -9.57053 -9.35998 -9.19708 -8.77334 -8.62951 -8.31047 -6.88688 -5.72331 -3.10310 3.39320 3.48669 3.49659 4.26056 4.46436 4.59914 5.09531 5.13124 5.17470 5.42117 5.52479 5.64777 5.72726 5.77762 5.85589 5.90475 5.97651 6.00966 6.07450 6.11698 6.17248 6.23564 6.32531 6.35748 6.43428 6.46111 6.54488 6.62194 6.68343 6.72310 6.75391 6.88072 6.99402 7.05205 7.30561 7.35254 7.50973 7.52676 7.81810 8.36223 9.18374 9.27369 9.86205 10.32994 11.31231 Molecular weight = 249.18amu Principal moments of inertia in cm(-1) A = 0.022956 B = 0.008117 C = 0.007562 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1219.455144 B = 3448.563171 C = 3701.929008 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.308 4.308 2 C -0.087 4.087 3 C 0.267 3.733 4 N -0.586 5.586 5 C -0.250 4.250 6 H 0.073 0.927 7 C 0.000 4.000 8 N -0.888 5.888 9 Si 0.893 3.107 10 H -0.279 1.279 11 H -0.290 1.290 12 H -0.294 1.294 13 C 0.150 3.850 14 C -0.091 4.091 15 H 0.065 0.935 16 C -0.106 4.106 17 C -0.117 4.117 18 C -0.118 4.118 19 C -0.104 4.104 20 C -0.061 4.061 21 C -0.140 4.140 22 C -0.142 4.142 23 H 0.186 0.814 24 H 0.095 0.905 25 H 0.033 0.967 26 H 0.252 0.748 27 H 0.047 0.953 28 H 0.039 0.961 29 H 0.047 0.953 30 H 0.091 0.909 31 H 0.054 0.946 32 H 0.049 0.951 33 H 0.048 0.952 34 H 0.059 0.941 35 H 0.056 0.944 36 H 0.050 0.950 37 H 0.058 0.942 38 H 0.044 0.956 39 H 0.050 0.950 40 H 0.059 0.941 41 H 0.041 0.959 42 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.491 -5.966 -9.571 11.289 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.327 4.327 2 C -0.090 4.090 3 C 0.141 3.859 4 N -0.306 5.306 5 C -0.379 4.379 6 H 0.091 0.909 7 C -0.198 4.198 8 N -0.532 5.532 9 Si 0.723 3.277 10 H -0.204 1.204 11 H -0.217 1.217 12 H -0.221 1.221 13 C 0.024 3.976 14 C -0.112 4.112 15 H 0.083 0.917 16 C -0.143 4.143 17 C -0.155 4.155 18 C -0.155 4.155 19 C -0.141 4.141 20 C -0.062 4.062 21 C -0.197 4.197 22 C -0.199 4.199 23 H 0.204 0.796 24 H 0.113 0.887 25 H 0.051 0.949 26 H 0.062 0.938 27 H 0.065 0.935 28 H 0.058 0.942 29 H 0.066 0.934 30 H 0.110 0.890 31 H 0.073 0.927 32 H 0.068 0.932 33 H 0.067 0.933 34 H 0.078 0.922 35 H 0.074 0.926 36 H 0.069 0.931 37 H 0.077 0.923 38 H 0.063 0.937 39 H 0.069 0.931 40 H 0.078 0.922 41 H 0.060 0.940 42 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -0.488 -5.877 -9.423 11.117 hybrid contribution -0.198 -0.192 1.103 1.137 sum -0.686 -6.070 -8.320 10.321 Atomic orbital electron populations 1.24099 0.95266 1.04817 1.08556 1.24312 0.95248 0.96043 0.93390 1.17804 0.82861 0.87203 0.98015 1.44181 1.74643 1.08092 1.03649 1.19166 1.25509 1.10940 0.82310 0.90880 1.24849 0.96694 1.00874 0.97430 1.70143 1.21648 1.33184 1.28242 0.86364 0.79612 0.77304 0.84385 1.20444 1.21724 1.22115 1.21089 0.94660 0.92440 0.89423 1.21758 1.00905 0.96450 0.92048 0.91655 1.21523 0.94800 0.97494 1.00492 1.21540 0.99521 0.98398 0.96044 1.21568 1.00345 0.97918 0.95689 1.21544 0.97489 0.97957 0.97130 1.20566 0.94437 0.95203 0.96006 1.21901 1.01761 0.99097 0.96986 1.21971 0.98232 0.98906 1.00757 0.79629 0.88734 0.94905 0.93787 0.93463 0.94247 0.93445 0.89012 0.92739 0.93235 0.93349 0.92226 0.92550 0.93135 0.92310 0.93732 0.93087 0.92203 0.93980 0.92530 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.31 -7.05 19.22 29.55 0.57 -6.48 16 2 C -0.09 -2.09 10.41 -37.12 -0.39 -2.48 16 3 C 0.27 6.25 5.45 -6.83 -0.04 6.21 16 4 N -0.59 -13.77 2.38 -176.57 -0.42 -14.19 16 5 C -0.25 -6.43 7.60 -15.06 -0.11 -6.55 16 6 H 0.07 1.88 7.90 -52.48 -0.41 1.47 16 7 C 0.00 0.00 4.85 -17.43 -0.08 -0.08 16 8 N -0.89 -24.76 9.50 55.49 0.53 -24.23 16 9 Si 0.89 21.33 29.61 -169.99 -5.03 16.29 16 10 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 11 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 12 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 13 C 0.15 2.96 4.48 -4.04 -0.02 2.94 16 14 C -0.09 -1.67 1.60 -90.62 -0.15 -1.81 16 15 H 0.07 1.38 6.97 -51.93 -0.36 1.02 16 16 C -0.11 -2.04 4.48 -26.73 -0.12 -2.16 16 17 C -0.12 -1.98 5.92 -26.73 -0.16 -2.14 16 18 C -0.12 -1.67 5.65 -26.73 -0.15 -1.82 16 19 C -0.10 -1.46 4.73 -26.73 -0.13 -1.59 16 20 C -0.06 -0.92 0.54 -154.51 -0.08 -1.00 16 21 C -0.14 -1.94 8.13 37.16 0.30 -1.63 16 22 C -0.14 -1.97 7.43 37.16 0.28 -1.70 16 23 H 0.19 3.65 7.80 -54.10 -0.42 3.23 16 24 H 0.09 2.43 6.42 -51.93 -0.33 2.09 16 25 H 0.03 0.68 7.98 -51.93 -0.41 0.27 16 26 H 0.25 6.98 8.31 -40.82 -0.34 6.64 16 27 H 0.05 0.93 6.59 -51.93 -0.34 0.58 16 28 H 0.04 0.73 5.98 -51.93 -0.31 0.42 16 29 H 0.05 0.89 6.43 -51.93 -0.33 0.55 16 30 H 0.09 2.21 6.35 -51.93 -0.33 1.88 16 31 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 32 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 33 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 34 H 0.06 0.82 6.43 -51.93 -0.33 0.49 16 35 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 36 H 0.05 0.64 8.14 -51.93 -0.42 0.21 16 37 H 0.06 0.81 6.32 -51.93 -0.33 0.48 16 38 H 0.04 0.54 8.14 -51.93 -0.42 0.11 16 39 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 40 H 0.06 0.86 4.81 -51.93 -0.25 0.61 16 41 H 0.04 0.52 8.14 -51.93 -0.42 0.09 16 42 H 0.06 0.80 6.54 -51.93 -0.34 0.46 16 LS Contribution 313.28 15.07 4.72 4.72 Total: -1.00 -27.30 313.28 -7.52 -34.82 By element: Atomic # 1 Polarization: 9.91 SS G_CDS: -7.03 Total: 2.87 kcal Atomic # 6 Polarization: -20.01 SS G_CDS: -0.28 Total: -20.29 kcal Atomic # 7 Polarization: -38.53 SS G_CDS: 0.11 Total: -38.42 kcal Atomic # 14 Polarization: 21.33 SS G_CDS: -5.03 Total: 16.29 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -27.30 -7.52 -34.82 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000852009738.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.362 kcal (2) G-P(sol) polarization free energy of solvation -27.305 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.057 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.516 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.821 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.541 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds