Wall clock time and date at job start Mon Mar 30 2020 06:58:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17396 * 1 3 3 C 1.47203 * 179.97438 * 2 1 4 4 N 1.46501 * 109.47056 * 353.11016 * 3 2 1 5 5 C 1.36934 * 120.00052 * 264.25020 * 4 3 2 6 6 H 1.08004 * 119.99907 * 196.84122 * 5 4 3 7 7 C 1.38812 * 120.00348 * 16.83158 * 5 4 3 8 8 N 1.31626 * 119.99325 * 22.19056 * 7 5 4 9 9 Si 1.86797 * 120.00426 * 202.18798 * 7 5 4 10 10 H 1.48498 * 109.46971 * 359.97438 * 9 7 5 11 11 H 1.48493 * 109.47327 * 120.00173 * 9 7 5 12 12 H 1.48503 * 109.47039 * 240.00252 * 9 7 5 13 13 C 1.46497 * 119.99977 * 84.25152 * 4 3 2 14 14 C 1.53002 * 109.47224 * 269.99836 * 13 4 3 15 15 H 1.09003 * 109.46531 * 54.99831 * 14 13 4 16 16 C 1.52998 * 109.47027 * 294.99988 * 14 13 4 17 17 C 1.52999 * 109.47413 * 179.97438 * 16 14 13 18 18 C 1.53001 * 109.46790 * 59.99704 * 17 16 14 19 19 C 1.52998 * 109.47384 * 300.00314 * 18 17 16 20 20 C 1.52995 * 109.47094 * 59.99948 * 19 18 17 21 21 C 1.52998 * 109.47094 * 180.02562 * 20 19 18 22 22 C 1.53002 * 109.47483 * 60.00035 * 20 19 18 23 23 H 4.40637 * 5.51301 * 179.97438 * 4 1 2 24 24 H 1.09003 * 109.47055 * 233.11000 * 3 2 1 25 25 H 1.08999 * 109.47301 * 113.11267 * 3 2 1 26 26 H 0.97007 * 119.99310 * 179.97438 * 8 7 5 27 27 H 1.08997 * 109.47388 * 149.99756 * 13 4 3 28 28 H 1.09000 * 109.47113 * 29.99793 * 13 4 3 29 29 H 1.09002 * 109.47313 * 299.99901 * 16 14 13 30 30 H 1.09003 * 109.47199 * 59.99787 * 16 14 13 31 31 H 1.09002 * 109.47092 * 300.00394 * 17 16 14 32 32 H 1.08993 * 109.47296 * 179.97438 * 17 16 14 33 33 H 1.09005 * 109.46895 * 180.02562 * 18 17 16 34 34 H 1.09002 * 109.46740 * 60.00474 * 18 17 16 35 35 H 1.09002 * 109.47313 * 299.99809 * 19 18 17 36 36 H 1.09003 * 109.47199 * 179.97438 * 19 18 17 37 37 H 1.09005 * 109.47315 * 180.02562 * 21 20 19 38 38 H 1.09003 * 109.47199 * 299.99974 * 21 20 19 39 39 H 1.09002 * 109.47313 * 59.99861 * 21 20 19 40 40 H 1.09003 * 109.46985 * 300.00546 * 22 20 19 41 41 H 1.08998 * 109.47054 * 59.99470 * 22 20 19 42 42 H 1.08993 * 109.47729 * 180.02562 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1349 -1.3704 0.1657 5 6 3.4754 -1.8302 1.4098 6 1 4.0803 -2.7194 1.5100 7 6 3.0432 -1.1536 2.5422 8 7 1.9892 -0.3679 2.4770 9 14 3.9573 -1.3581 4.1583 10 1 5.0981 -2.2894 3.9673 11 1 4.4656 -0.0380 4.6100 12 1 3.0345 -1.9102 5.1825 13 6 3.2597 -2.2494 -0.9996 14 6 1.9501 -3.0137 -1.2044 15 1 1.1245 -2.3060 -1.2802 16 6 1.7137 -3.9480 -0.0161 17 6 0.4039 -4.7118 -0.2206 18 6 0.4891 -5.5349 -1.5075 19 6 0.7256 -4.6007 -2.6958 20 6 2.0353 -3.8368 -2.4913 21 6 2.2715 -2.9021 -3.6793 22 6 3.1940 -4.8304 -2.3853 23 1 -1.0498 -0.0003 0.0002 24 1 3.0090 0.6177 0.8219 25 1 3.0092 0.4042 -0.9452 26 1 1.6869 0.1047 3.2685 27 1 4.0717 -2.9576 -0.8353 28 1 3.4733 -1.6508 -1.8851 29 1 2.5393 -4.6556 0.0597 30 1 1.6526 -3.3615 0.9006 31 1 -0.4216 -4.0039 -0.2961 32 1 0.2357 -5.3777 0.6257 33 1 -0.4442 -6.0788 -1.6534 34 1 1.3146 -6.2428 -1.4319 35 1 -0.0999 -3.8928 -2.7713 36 1 0.7867 -5.1871 -3.6126 37 1 3.2049 -2.3582 -3.5338 38 1 2.3320 -3.4882 -4.5963 39 1 1.4460 -2.1942 -3.7544 40 1 3.0256 -5.4961 -1.5387 41 1 3.2547 -5.4169 -3.3020 42 1 4.1271 -4.2863 -2.2391 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000852009738.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:58:10 Heat of formation + Delta-G solvation = 41.318171 kcal Electronic energy + Delta-G solvation = -19819.532423 eV Core-core repulsion = 17186.447199 eV Total energy + Delta-G solvation = -2633.085224 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 249.179 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.76018 -37.61287 -34.22699 -33.45120 -33.29735 -31.36290 -28.18939 -28.00040 -27.68675 -26.34625 -23.86018 -22.04395 -21.49605 -19.25757 -18.91717 -18.17586 -16.88278 -16.23430 -15.81407 -15.56204 -15.31656 -14.97077 -14.76311 -14.44036 -14.11225 -13.73119 -13.41285 -13.20294 -12.92098 -12.83145 -12.67194 -12.61497 -12.35959 -12.21347 -12.18911 -12.03578 -11.83995 -11.68481 -11.46754 -11.00791 -10.82234 -10.67062 -10.54469 -10.44919 -10.20014 -8.80588 -7.75754 -5.13060 1.45955 1.50575 1.58086 2.39637 2.57616 2.65638 3.35517 3.79484 3.87479 3.95435 4.08242 4.16528 4.32623 4.34181 4.55232 4.56525 4.69183 4.73864 4.83237 4.90157 4.91892 4.94496 4.96612 5.08291 5.12755 5.17769 5.20166 5.31251 5.31569 5.35988 5.39261 5.46002 5.49415 5.58635 5.69173 5.72651 5.74349 5.87464 5.90909 6.37543 7.18623 7.41471 7.93133 8.35799 9.26131 Molecular weight = 249.18amu Principal moments of inertia in cm(-1) A = 0.022956 B = 0.008117 C = 0.007562 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1219.455144 B = 3448.563171 C = 3701.929008 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.306 4.306 2 C -0.115 4.115 3 C 0.268 3.732 4 N -0.597 5.597 5 C -0.240 4.240 6 H 0.071 0.929 7 C -0.049 4.049 8 N -0.914 5.914 9 Si 0.948 3.052 10 H -0.270 1.270 11 H -0.294 1.294 12 H -0.304 1.304 13 C 0.149 3.851 14 C -0.079 4.079 15 H 0.035 0.965 16 C -0.098 4.098 17 C -0.115 4.115 18 C -0.111 4.111 19 C -0.102 4.102 20 C -0.058 4.058 21 C -0.138 4.138 22 C -0.139 4.139 23 H 0.213 0.787 24 H 0.068 0.932 25 H 0.059 0.941 26 H 0.242 0.758 27 H 0.050 0.950 28 H 0.055 0.945 29 H 0.051 0.949 30 H 0.037 0.963 31 H 0.037 0.963 32 H 0.051 0.949 33 H 0.067 0.933 34 H 0.070 0.930 35 H 0.046 0.954 36 H 0.077 0.923 37 H 0.055 0.945 38 H 0.069 0.931 39 H 0.041 0.959 40 H 0.053 0.947 41 H 0.066 0.934 42 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.206 -7.637 -11.513 13.817 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.325 4.325 2 C -0.118 4.118 3 C 0.143 3.857 4 N -0.317 5.317 5 C -0.370 4.370 6 H 0.088 0.912 7 C -0.244 4.244 8 N -0.560 5.560 9 Si 0.778 3.222 10 H -0.194 1.194 11 H -0.222 1.222 12 H -0.232 1.232 13 C 0.024 3.976 14 C -0.100 4.100 15 H 0.053 0.947 16 C -0.136 4.136 17 C -0.153 4.153 18 C -0.148 4.148 19 C -0.139 4.139 20 C -0.059 4.059 21 C -0.195 4.195 22 C -0.196 4.196 23 H 0.230 0.770 24 H 0.086 0.914 25 H 0.077 0.923 26 H 0.051 0.949 27 H 0.068 0.932 28 H 0.073 0.927 29 H 0.070 0.930 30 H 0.056 0.944 31 H 0.056 0.944 32 H 0.070 0.930 33 H 0.086 0.914 34 H 0.089 0.911 35 H 0.065 0.935 36 H 0.096 0.904 37 H 0.074 0.926 38 H 0.087 0.913 39 H 0.060 0.940 40 H 0.072 0.928 41 H 0.085 0.915 42 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -0.185 -7.565 -11.391 13.675 hybrid contribution -0.292 0.308 1.667 1.720 sum -0.477 -7.257 -9.724 12.143 Atomic orbital electron populations 1.24814 0.96225 1.03883 1.07614 1.24620 0.95945 0.96960 0.94272 1.17739 0.82872 0.86998 0.98130 1.44346 1.74562 1.08774 1.03981 1.19312 1.24189 1.10142 0.83366 0.91161 1.25400 0.97554 1.01617 0.99858 1.70294 1.23016 1.34547 1.28119 0.85494 0.78557 0.76900 0.81220 1.19439 1.22151 1.23212 1.21238 0.95479 0.92357 0.88573 1.21536 0.98653 0.95958 0.93808 0.94690 1.21358 0.96437 0.97269 0.98520 1.21493 0.97342 0.98239 0.98184 1.21527 1.01844 0.97653 0.93815 1.21544 0.96366 0.97869 0.98159 1.20528 0.95781 0.95330 0.94246 1.21871 1.01231 0.98965 0.97409 1.21940 0.97242 0.98591 1.01798 0.77003 0.91428 0.92332 0.94856 0.93186 0.92682 0.92990 0.94372 0.94439 0.92985 0.91432 0.91145 0.93537 0.90427 0.92570 0.91252 0.93954 0.92806 0.91475 0.93004 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.31 -14.09 19.22 74.32 1.43 -12.67 16 2 C -0.12 -5.62 10.41 31.13 0.32 -5.30 16 3 C 0.27 12.78 5.45 84.57 0.46 13.24 16 4 N -0.60 -28.35 2.38 -712.55 -1.70 -30.05 16 5 C -0.24 -12.54 7.60 84.03 0.64 -11.91 16 6 H 0.07 3.65 7.90 -2.91 -0.02 3.63 16 7 C -0.05 -2.65 4.85 84.86 0.41 -2.24 16 8 N -0.91 -52.53 9.50 21.65 0.21 -52.32 16 9 Si 0.95 44.88 29.61 68.60 2.03 46.91 16 10 H -0.27 -12.20 7.11 99.48 0.71 -11.49 16 11 H -0.29 -14.01 7.11 99.48 0.71 -13.30 16 12 H -0.30 -14.80 7.11 99.48 0.71 -14.09 16 13 C 0.15 5.77 4.48 86.38 0.39 6.16 16 14 C -0.08 -2.85 1.60 -10.79 -0.02 -2.87 16 15 H 0.03 1.48 6.97 -2.39 -0.02 1.47 16 16 C -0.10 -3.82 4.48 30.59 0.14 -3.68 16 17 C -0.11 -3.81 5.92 30.59 0.18 -3.63 16 18 C -0.11 -2.84 5.65 30.59 0.17 -2.67 16 19 C -0.10 -2.55 4.73 30.59 0.14 -2.40 16 20 C -0.06 -1.59 0.54 -52.18 -0.03 -1.62 16 21 C -0.14 -3.39 8.13 71.98 0.59 -2.81 16 22 C -0.14 -3.41 7.43 71.98 0.53 -2.87 16 23 H 0.21 8.19 7.80 -4.43 -0.03 8.15 16 24 H 0.07 3.58 6.42 -2.39 -0.02 3.57 16 25 H 0.06 2.43 7.98 -2.39 -0.02 2.41 16 26 H 0.24 13.89 8.31 -92.70 -0.77 13.12 16 27 H 0.05 1.91 6.59 -2.39 -0.02 1.89 16 28 H 0.05 1.96 5.98 -2.39 -0.01 1.94 16 29 H 0.05 1.93 6.43 -2.39 -0.02 1.91 16 30 H 0.04 1.88 6.35 -2.39 -0.02 1.87 16 31 H 0.04 1.34 8.14 -2.39 -0.02 1.33 16 32 H 0.05 1.66 8.14 -2.39 -0.02 1.64 16 33 H 0.07 1.51 8.14 -2.38 -0.02 1.49 16 34 H 0.07 1.68 6.43 -2.39 -0.02 1.67 16 35 H 0.05 1.26 8.14 -2.39 -0.02 1.24 16 36 H 0.08 1.58 8.14 -2.39 -0.02 1.56 16 37 H 0.06 1.40 6.32 -2.38 -0.02 1.39 16 38 H 0.07 1.38 8.14 -2.39 -0.02 1.37 16 39 H 0.04 1.11 8.14 -2.39 -0.02 1.09 16 40 H 0.05 1.39 4.81 -2.39 -0.01 1.37 16 41 H 0.07 1.34 8.14 -2.39 -0.02 1.32 16 42 H 0.05 1.32 6.54 -2.39 -0.02 1.30 16 Total: -1.00 -59.75 313.28 6.87 -52.88 By element: Atomic # 1 Polarization: 16.88 SS G_CDS: 0.97 Total: 17.84 kcal Atomic # 6 Polarization: -40.62 SS G_CDS: 5.36 Total: -35.26 kcal Atomic # 7 Polarization: -80.88 SS G_CDS: -1.49 Total: -82.37 kcal Atomic # 14 Polarization: 44.88 SS G_CDS: 2.03 Total: 46.91 kcal Total: -59.75 6.87 -52.88 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000852009738.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.202 kcal (2) G-P(sol) polarization free energy of solvation -59.754 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.448 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.870 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.884 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.318 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds