Wall clock time and date at job start Mon Mar 30 2020 06:27:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86808 * 119.99377 * 2 1 4 4 H 1.48498 * 109.47039 * 269.99745 * 3 2 1 5 5 H 1.48500 * 109.47459 * 30.00312 * 3 2 1 6 6 H 1.48501 * 109.46880 * 150.00130 * 3 2 1 7 7 C 1.37876 * 120.00597 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00281 * 173.39983 * 7 2 1 9 9 C 1.50699 * 119.99697 * 353.40059 * 7 2 1 10 10 C 1.53004 * 115.54812 * 85.27848 * 9 7 2 11 11 N 1.46897 * 109.46943 * 39.57487 * 10 9 7 12 12 C 1.46902 * 110.99750 * 174.72015 * 11 10 9 13 13 C 1.55856 * 110.16903 * 204.99819 * 12 11 10 14 14 C 1.50523 * 104.26279 * 247.97207 * 13 12 11 15 15 H 1.08995 * 109.41738 * 81.01835 * 14 13 12 16 16 C 1.51191 * 124.69129 * 214.20270 * 14 13 12 17 17 C 1.56314 * 101.70232 * 157.15333 * 16 14 13 18 18 C 1.55851 * 105.89197 * 335.17246 * 17 16 14 19 19 C 1.50537 * 104.26528 * 352.85552 * 18 17 16 20 20 H 1.08998 * 109.98168 * 278.74150 * 19 18 17 21 21 C 1.51194 * 124.65957 * 145.75743 * 19 18 17 22 22 C 1.52993 * 117.51955 * 230.97914 * 9 7 2 23 23 C 1.52998 * 60.00135 * 107.48524 * 22 9 7 24 24 H 0.96998 * 120.00545 * 5.06574 * 1 2 3 25 25 H 1.09002 * 109.47396 * 279.57424 * 10 9 7 26 26 H 1.08997 * 109.46926 * 159.57454 * 10 9 7 27 27 H 1.00900 * 111.00225 * 298.67094 * 11 10 9 28 28 H 1.08998 * 110.14415 * 326.73012 * 12 11 10 29 29 H 1.08999 * 110.47574 * 129.26951 * 13 12 11 30 30 H 1.09000 * 110.47209 * 6.66806 * 13 12 11 31 31 H 1.08999 * 110.97636 * 39.05539 * 16 14 13 32 32 H 1.08990 * 110.98176 * 275.26244 * 16 14 13 33 33 H 1.09002 * 110.16036 * 94.27542 * 17 16 14 34 34 H 1.08997 * 110.16875 * 216.06620 * 17 16 14 35 35 H 1.08997 * 110.47503 * 111.54696 * 18 17 16 36 36 H 1.08998 * 110.47656 * 234.16042 * 18 17 16 37 37 H 1.08995 * 110.98098 * 320.97743 * 21 19 18 38 38 H 1.08999 * 110.97790 * 84.77214 * 21 19 18 39 39 H 1.09005 * 117.49869 * 214.97145 * 22 9 7 40 40 H 1.09000 * 117.49987 * 359.97438 * 22 9 7 41 41 H 1.09002 * 117.49846 * 252.51189 * 23 22 9 42 42 H 1.08995 * 117.50353 * 107.49133 * 23 22 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6179 0.0000 4 1 2.4965 2.0466 -1.4001 5 1 1.4464 2.6528 0.7001 6 1 3.5466 1.4404 0.7000 7 6 2.0047 -1.1940 -0.0005 8 1 3.0792 -1.1970 -0.1080 9 6 1.2587 -2.4948 0.1489 10 6 0.6971 -3.0859 -1.1458 11 7 1.6676 -2.8960 -2.2321 12 6 1.2176 -3.5611 -3.4622 13 6 2.4405 -3.9067 -4.3645 14 6 2.2852 -3.0062 -5.5606 15 1 2.6611 -2.0125 -5.3172 16 6 2.6790 -3.3757 -6.9728 17 6 1.7860 -2.4075 -7.8145 18 6 0.5629 -2.0623 -6.9124 19 6 0.7181 -2.9632 -5.7164 20 1 0.3409 -3.9591 -5.9488 21 6 0.3245 -2.5931 -4.3043 22 6 1.7511 -3.4734 1.2169 23 6 0.4476 -2.7011 1.4297 24 1 -0.4851 0.8367 -0.0742 25 1 -0.2359 -2.5830 -1.4001 26 1 0.5100 -4.1508 -1.0078 27 1 1.8417 -1.9155 -2.3942 28 1 0.6630 -4.4670 -3.2178 29 1 2.4068 -4.9531 -4.6679 30 1 3.3726 -3.6901 -3.8426 31 1 2.4351 -4.4163 -7.1863 32 1 3.7372 -3.1809 -7.1464 33 1 2.3407 -1.5014 -8.0584 34 1 1.4524 -2.9017 -8.7269 35 1 0.5966 -1.0161 -6.6084 36 1 -0.3691 -2.2788 -7.4344 37 1 0.5685 -1.5524 -4.0912 38 1 -0.7337 -2.7879 -4.1304 39 1 1.6749 -4.5384 0.9972 40 1 2.6151 -3.1767 1.8115 41 1 0.4539 -1.8960 2.1645 42 1 -0.4860 -3.2578 1.3500 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000902979916.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:27:53 Heat of formation + Delta-G solvation = 10.541946 kcal Electronic energy + Delta-G solvation = -18865.166013 eV Core-core repulsion = 16230.746232 eV Total energy + Delta-G solvation = -2634.419782 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 249.179 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -39.90886 -36.85714 -34.89137 -31.88527 -31.37509 -30.05017 -26.27156 -25.70131 -25.20370 -23.40639 -20.96735 -20.52092 -19.58818 -19.29894 -18.85151 -15.99069 -15.51608 -14.85664 -14.59998 -14.55356 -14.42508 -13.87895 -13.60868 -13.17666 -12.44989 -12.19908 -12.06053 -11.76159 -11.46641 -11.18105 -11.12371 -10.98570 -10.94792 -10.79649 -10.72340 -10.42543 -10.32768 -10.26940 -10.07805 -9.97783 -9.70278 -9.32445 -8.74940 -8.39548 -8.01112 -7.25736 -5.98607 -4.02782 3.29756 3.37854 3.42124 4.28279 4.42865 4.77838 4.83407 5.03817 5.26569 5.30307 5.31908 5.41412 5.46305 5.55838 5.63711 5.81598 5.82133 5.86933 5.91933 5.98050 6.03403 6.10563 6.22697 6.27005 6.30616 6.39365 6.48008 6.50038 6.60297 6.66154 6.68140 6.71534 6.84319 6.89055 7.05827 7.19437 7.51198 7.57799 7.92761 8.19981 8.49872 8.59735 9.00135 9.61067 11.09337 Molecular weight = 249.18amu Principal moments of inertia in cm(-1) A = 0.022019 B = 0.006291 C = 0.005471 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1271.342616 B = 4449.915650 C = 5116.907969 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.882 5.882 2 C 0.068 3.932 3 Si 0.885 3.115 4 H -0.281 1.281 5 H -0.288 1.288 6 H -0.274 1.274 7 C -0.481 4.481 8 H 0.061 0.939 9 C 0.051 3.949 10 C 0.108 3.892 11 N -0.667 5.667 12 C 0.086 3.914 13 C -0.098 4.098 14 C -0.111 4.111 15 H 0.072 0.928 16 C -0.108 4.108 17 C -0.122 4.122 18 C -0.110 4.110 19 C -0.109 4.109 20 H 0.067 0.933 21 C -0.137 4.137 22 C -0.208 4.208 23 C -0.164 4.164 24 H 0.258 0.742 25 H 0.027 0.973 26 H 0.035 0.965 27 H 0.354 0.646 28 H 0.068 0.932 29 H 0.057 0.943 30 H 0.076 0.924 31 H 0.064 0.936 32 H 0.062 0.938 33 H 0.062 0.938 34 H 0.059 0.941 35 H 0.064 0.936 36 H 0.059 0.941 37 H 0.070 0.930 38 H 0.058 0.942 39 H 0.062 0.938 40 H 0.073 0.927 41 H 0.078 0.922 42 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.308 -5.662 -12.273 13.579 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.519 5.519 2 C -0.134 4.134 3 Si 0.713 3.287 4 H -0.208 1.208 5 H -0.214 1.214 6 H -0.199 1.199 7 C -0.519 4.519 8 H 0.079 0.921 9 C 0.050 3.950 10 C -0.021 4.021 11 N -0.299 5.299 12 C -0.026 4.026 13 C -0.136 4.136 14 C -0.130 4.130 15 H 0.090 0.910 16 C -0.145 4.145 17 C -0.160 4.160 18 C -0.148 4.148 19 C -0.128 4.128 20 H 0.085 0.915 21 C -0.176 4.176 22 C -0.245 4.245 23 C -0.202 4.202 24 H 0.068 0.932 25 H 0.046 0.954 26 H 0.053 0.947 27 H 0.175 0.825 28 H 0.086 0.914 29 H 0.076 0.924 30 H 0.095 0.905 31 H 0.082 0.918 32 H 0.080 0.920 33 H 0.080 0.920 34 H 0.078 0.922 35 H 0.083 0.917 36 H 0.077 0.923 37 H 0.089 0.911 38 H 0.077 0.923 39 H 0.081 0.919 40 H 0.092 0.908 41 H 0.097 0.903 42 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 1.548 -6.045 -11.979 13.507 hybrid contribution -0.482 1.582 -0.250 1.672 sum 1.066 -4.463 -12.229 13.061 Atomic orbital electron populations 1.69998 1.05800 1.26454 1.49665 1.24995 0.94749 0.98687 0.95004 0.86703 0.80059 0.83855 0.78087 1.20761 1.21406 1.19852 1.20396 0.93123 0.88519 1.49908 0.92093 1.18804 0.96987 0.93577 0.85636 1.21372 0.92755 0.96153 0.91844 1.60501 1.45326 1.20179 1.03851 1.23025 0.92872 0.96391 0.90306 1.21622 0.99546 0.98027 0.94436 1.22035 0.96247 1.00722 0.93975 0.90976 1.21823 0.98900 0.99005 0.94806 1.22905 0.96053 0.99047 0.97960 1.21567 0.97543 0.99844 0.95851 1.21943 0.97089 0.99515 0.94209 0.91476 1.22643 0.99913 1.00635 0.94437 1.22983 0.98003 0.95615 1.07895 1.22514 0.92183 1.01300 1.04176 0.93230 0.95432 0.94683 0.82461 0.91373 0.92437 0.90543 0.91773 0.91974 0.91959 0.92209 0.91744 0.92265 0.91126 0.92327 0.91942 0.90815 0.90325 0.92268 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -24.57 12.92 55.43 0.72 -23.86 16 2 C 0.07 1.83 5.39 -17.82 -0.10 1.73 16 3 Si 0.89 20.91 29.55 -169.99 -5.02 15.89 16 4 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 5 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 6 H -0.27 -6.46 7.11 56.52 0.40 -6.06 16 7 C -0.48 -12.81 7.47 -34.44 -0.26 -13.07 16 8 H 0.06 1.66 7.82 -52.49 -0.41 1.25 16 9 C 0.05 1.25 1.76 -155.66 -0.27 0.97 16 10 C 0.11 2.42 5.70 -3.82 -0.02 2.40 16 11 N -0.67 -13.57 6.00 -103.25 -0.62 -14.19 16 12 C 0.09 1.43 3.30 -64.40 -0.21 1.21 16 13 C -0.10 -1.43 6.46 -26.44 -0.17 -1.60 16 14 C -0.11 -1.47 2.67 -90.29 -0.24 -1.72 16 15 H 0.07 1.06 8.14 -51.93 -0.42 0.63 16 16 C -0.11 -1.19 6.72 -25.86 -0.17 -1.37 16 17 C -0.12 -1.28 6.94 -23.43 -0.16 -1.44 16 18 C -0.11 -1.30 6.68 -26.44 -0.18 -1.48 16 19 C -0.11 -1.44 2.68 -90.28 -0.24 -1.68 16 20 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 21 C -0.14 -2.17 6.34 -25.86 -0.16 -2.33 16 22 C -0.21 -4.69 9.88 -26.74 -0.26 -4.96 16 23 C -0.16 -3.92 9.46 -26.73 -0.25 -4.18 16 24 H 0.26 6.94 8.32 -40.82 -0.34 6.60 16 25 H 0.03 0.67 8.14 -51.93 -0.42 0.25 16 26 H 0.03 0.74 7.74 -51.93 -0.40 0.34 16 27 H 0.35 7.83 7.14 -39.29 -0.28 7.54 16 28 H 0.07 1.13 7.73 -51.93 -0.40 0.73 16 29 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 30 H 0.08 1.20 7.98 -51.93 -0.41 0.79 16 31 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 32 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 33 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 34 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 35 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 36 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 37 H 0.07 1.24 7.65 -51.93 -0.40 0.85 16 38 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 39 H 0.06 1.29 8.08 -51.93 -0.42 0.87 16 40 H 0.07 1.66 8.14 -51.93 -0.42 1.24 16 41 H 0.08 2.01 8.14 -51.93 -0.42 1.58 16 42 H 0.06 1.34 8.14 -51.93 -0.42 0.92 16 LS Contribution 327.68 15.07 4.94 4.94 Total: -1.00 -26.66 327.68 -10.48 -37.13 By element: Atomic # 1 Polarization: 15.38 SS G_CDS: -7.78 Total: 7.60 kcal Atomic # 6 Polarization: -24.80 SS G_CDS: -2.71 Total: -27.51 kcal Atomic # 7 Polarization: -38.15 SS G_CDS: 0.10 Total: -38.05 kcal Atomic # 14 Polarization: 20.91 SS G_CDS: -5.02 Total: 15.89 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -26.66 -10.48 -37.13 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000902979916.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.674 kcal (2) G-P(sol) polarization free energy of solvation -26.655 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.019 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.477 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.132 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.542 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds