Wall clock time and date at job start Mon Mar 30 2020 06:27:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86808 * 119.99377 * 2 1 4 4 H 1.48498 * 109.47039 * 269.99745 * 3 2 1 5 5 H 1.48500 * 109.47459 * 30.00312 * 3 2 1 6 6 H 1.48501 * 109.46880 * 150.00130 * 3 2 1 7 7 C 1.37876 * 120.00597 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00281 * 173.39983 * 7 2 1 9 9 C 1.50699 * 119.99697 * 353.40059 * 7 2 1 10 10 C 1.53004 * 115.54812 * 85.27848 * 9 7 2 11 11 N 1.46897 * 109.46943 * 39.57487 * 10 9 7 12 12 C 1.46902 * 110.99750 * 174.72015 * 11 10 9 13 13 C 1.55856 * 110.16903 * 204.99819 * 12 11 10 14 14 C 1.50523 * 104.26279 * 247.97207 * 13 12 11 15 15 H 1.08995 * 109.41738 * 81.01835 * 14 13 12 16 16 C 1.51191 * 124.69129 * 214.20270 * 14 13 12 17 17 C 1.56314 * 101.70232 * 157.15333 * 16 14 13 18 18 C 1.55851 * 105.89197 * 335.17246 * 17 16 14 19 19 C 1.50537 * 104.26528 * 352.85552 * 18 17 16 20 20 H 1.08998 * 109.98168 * 278.74150 * 19 18 17 21 21 C 1.51194 * 124.65957 * 145.75743 * 19 18 17 22 22 C 1.52993 * 117.51955 * 230.97914 * 9 7 2 23 23 C 1.52998 * 60.00135 * 107.48524 * 22 9 7 24 24 H 0.96998 * 120.00545 * 5.06574 * 1 2 3 25 25 H 1.09002 * 109.47396 * 279.57424 * 10 9 7 26 26 H 1.08997 * 109.46926 * 159.57454 * 10 9 7 27 27 H 1.00900 * 111.00225 * 298.67094 * 11 10 9 28 28 H 1.08998 * 110.14415 * 326.73012 * 12 11 10 29 29 H 1.08999 * 110.47574 * 129.26951 * 13 12 11 30 30 H 1.09000 * 110.47209 * 6.66806 * 13 12 11 31 31 H 1.08999 * 110.97636 * 39.05539 * 16 14 13 32 32 H 1.08990 * 110.98176 * 275.26244 * 16 14 13 33 33 H 1.09002 * 110.16036 * 94.27542 * 17 16 14 34 34 H 1.08997 * 110.16875 * 216.06620 * 17 16 14 35 35 H 1.08997 * 110.47503 * 111.54696 * 18 17 16 36 36 H 1.08998 * 110.47656 * 234.16042 * 18 17 16 37 37 H 1.08995 * 110.98098 * 320.97743 * 21 19 18 38 38 H 1.08999 * 110.97790 * 84.77214 * 21 19 18 39 39 H 1.09005 * 117.49869 * 214.97145 * 22 9 7 40 40 H 1.09000 * 117.49987 * 359.97438 * 22 9 7 41 41 H 1.09002 * 117.49846 * 252.51189 * 23 22 9 42 42 H 1.08995 * 117.50353 * 107.49133 * 23 22 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6179 0.0000 4 1 2.4965 2.0466 -1.4001 5 1 1.4464 2.6528 0.7001 6 1 3.5466 1.4404 0.7000 7 6 2.0047 -1.1940 -0.0005 8 1 3.0792 -1.1970 -0.1080 9 6 1.2587 -2.4948 0.1489 10 6 0.6971 -3.0859 -1.1458 11 7 1.6676 -2.8960 -2.2321 12 6 1.2176 -3.5611 -3.4622 13 6 2.4405 -3.9067 -4.3645 14 6 2.2852 -3.0062 -5.5606 15 1 2.6611 -2.0125 -5.3172 16 6 2.6790 -3.3757 -6.9728 17 6 1.7860 -2.4075 -7.8145 18 6 0.5629 -2.0623 -6.9124 19 6 0.7181 -2.9632 -5.7164 20 1 0.3409 -3.9591 -5.9488 21 6 0.3245 -2.5931 -4.3043 22 6 1.7511 -3.4734 1.2169 23 6 0.4476 -2.7011 1.4297 24 1 -0.4851 0.8367 -0.0742 25 1 -0.2359 -2.5830 -1.4001 26 1 0.5100 -4.1508 -1.0078 27 1 1.8417 -1.9155 -2.3942 28 1 0.6630 -4.4670 -3.2178 29 1 2.4068 -4.9531 -4.6679 30 1 3.3726 -3.6901 -3.8426 31 1 2.4351 -4.4163 -7.1863 32 1 3.7372 -3.1809 -7.1464 33 1 2.3407 -1.5014 -8.0584 34 1 1.4524 -2.9017 -8.7269 35 1 0.5966 -1.0161 -6.6084 36 1 -0.3691 -2.2788 -7.4344 37 1 0.5685 -1.5524 -4.0912 38 1 -0.7337 -2.7879 -4.1304 39 1 1.6749 -4.5384 0.9972 40 1 2.6151 -3.1767 1.8115 41 1 0.4539 -1.8960 2.1645 42 1 -0.4860 -3.2578 1.3500 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000902979916.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:27:53 Heat of formation + Delta-G solvation = -2.127015 kcal Electronic energy + Delta-G solvation = -18865.715381 eV Core-core repulsion = 16230.746232 eV Total energy + Delta-G solvation = -2634.969149 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 249.179 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.03709 -38.65568 -36.27812 -33.95419 -32.74799 -31.12335 -27.87908 -27.06312 -26.73715 -24.92024 -22.85447 -21.69958 -20.93680 -20.60840 -20.31048 -17.92552 -16.70021 -16.53543 -16.34121 -15.79308 -15.53985 -15.51685 -15.08411 -14.64978 -14.10034 -13.63087 -13.20781 -13.19261 -13.16236 -12.91129 -12.85096 -12.41208 -12.30879 -12.17925 -12.12501 -11.95943 -11.88570 -11.45702 -11.32671 -11.16052 -11.10995 -10.78384 -10.74705 -10.38340 -9.90304 -8.92785 -8.05889 -6.14703 1.40022 1.43396 1.51999 2.44131 3.19926 3.22866 3.42800 3.68591 3.76901 3.88152 4.16523 4.26461 4.35673 4.38367 4.40330 4.57238 4.60868 4.71573 4.74146 4.77501 4.82206 4.83009 4.92113 4.96749 5.00953 5.03500 5.09734 5.14038 5.21918 5.27391 5.28488 5.29642 5.37700 5.51625 5.58335 5.63109 5.66153 5.67817 5.81587 6.44085 6.63121 6.76934 6.92941 7.51454 9.01442 Molecular weight = 249.18amu Principal moments of inertia in cm(-1) A = 0.022019 B = 0.006291 C = 0.005471 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1271.342616 B = 4449.915650 C = 5116.907969 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.909 5.909 2 C 0.027 3.973 3 Si 0.942 3.058 4 H -0.276 1.276 5 H -0.289 1.289 6 H -0.272 1.272 7 C -0.487 4.487 8 H 0.050 0.950 9 C 0.022 3.978 10 C 0.122 3.878 11 N -0.669 5.669 12 C 0.081 3.919 13 C -0.090 4.090 14 C -0.108 4.108 15 H 0.051 0.949 16 C -0.103 4.103 17 C -0.117 4.117 18 C -0.113 4.113 19 C -0.104 4.104 20 H 0.079 0.921 21 C -0.134 4.134 22 C -0.186 4.186 23 C -0.168 4.168 24 H 0.257 0.743 25 H -0.001 1.001 26 H 0.049 0.951 27 H 0.340 0.660 28 H 0.072 0.928 29 H 0.078 0.922 30 H 0.062 0.938 31 H 0.077 0.923 32 H 0.070 0.930 33 H 0.065 0.935 34 H 0.079 0.921 35 H 0.051 0.949 36 H 0.071 0.929 37 H 0.044 0.956 38 H 0.052 0.948 39 H 0.087 0.913 40 H 0.072 0.928 41 H 0.055 0.945 42 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.003 -6.730 -13.907 15.579 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.547 5.547 2 C -0.172 4.172 3 Si 0.768 3.232 4 H -0.201 1.201 5 H -0.215 1.215 6 H -0.197 1.197 7 C -0.525 4.525 8 H 0.068 0.932 9 C 0.022 3.978 10 C -0.007 4.007 11 N -0.299 5.299 12 C -0.030 4.030 13 C -0.128 4.128 14 C -0.126 4.126 15 H 0.070 0.930 16 C -0.141 4.141 17 C -0.155 4.155 18 C -0.150 4.150 19 C -0.123 4.123 20 H 0.097 0.903 21 C -0.173 4.173 22 C -0.223 4.223 23 C -0.206 4.206 24 H 0.066 0.934 25 H 0.017 0.983 26 H 0.067 0.933 27 H 0.160 0.840 28 H 0.090 0.910 29 H 0.096 0.904 30 H 0.081 0.919 31 H 0.096 0.904 32 H 0.088 0.912 33 H 0.083 0.917 34 H 0.097 0.903 35 H 0.070 0.930 36 H 0.090 0.910 37 H 0.063 0.937 38 H 0.071 0.929 39 H 0.105 0.895 40 H 0.091 0.909 41 H 0.074 0.926 42 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 2.254 -7.129 -13.621 15.538 hybrid contribution -0.706 1.888 0.294 2.037 sum 1.549 -5.241 -13.327 14.404 Atomic orbital electron populations 1.70100 1.06933 1.26929 1.50744 1.25579 0.95387 1.01399 0.94879 0.85807 0.78826 0.80373 0.78173 1.20132 1.21506 1.19655 1.20533 0.92696 0.89811 1.49504 0.93193 1.19015 0.97941 0.93959 0.86918 1.21155 0.91745 0.96239 0.91611 1.60522 1.44985 1.19310 1.05123 1.23186 0.94270 0.96162 0.89363 1.21528 0.97558 0.99477 0.94265 1.21996 0.96254 0.99410 0.94987 0.93021 1.21833 0.99580 0.99903 0.92739 1.22886 0.95117 0.99289 0.98164 1.21606 0.99094 0.98760 0.95557 1.21909 0.96935 1.00355 0.93091 0.90273 1.22518 0.99347 0.98890 0.96578 1.22978 0.96900 0.96487 1.05957 1.22418 0.93470 1.01301 1.03421 0.93430 0.98260 0.93258 0.84002 0.90976 0.90353 0.91911 0.90438 0.91161 0.91655 0.90262 0.93018 0.91006 0.93679 0.92911 0.89479 0.90928 0.92594 0.91167 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -51.67 12.92 21.45 0.28 -51.39 16 2 C 0.03 1.48 5.39 84.65 0.46 1.94 16 3 Si 0.94 43.47 29.55 68.60 2.03 45.50 16 4 H -0.28 -12.38 7.11 99.48 0.71 -11.67 16 5 H -0.29 -13.32 7.11 99.48 0.71 -12.61 16 6 H -0.27 -12.37 7.11 99.48 0.71 -11.66 16 7 C -0.49 -26.28 7.47 25.60 0.19 -26.09 16 8 H 0.05 2.75 7.82 -2.91 -0.02 2.72 16 9 C 0.02 1.10 1.76 -52.93 -0.09 1.01 16 10 C 0.12 5.51 5.70 86.30 0.49 6.00 16 11 N -0.67 -27.49 6.00 -480.59 -2.88 -30.37 16 12 C 0.08 2.67 3.30 47.06 0.16 2.82 16 13 C -0.09 -2.49 6.46 30.78 0.20 -2.29 16 14 C -0.11 -2.70 2.67 -10.58 -0.03 -2.73 16 15 H 0.05 1.50 8.14 -2.39 -0.02 1.48 16 16 C -0.10 -1.97 6.72 31.16 0.21 -1.77 16 17 C -0.12 -2.11 6.94 32.73 0.23 -1.88 16 18 C -0.11 -2.46 6.68 30.78 0.21 -2.25 16 19 C -0.10 -2.61 2.68 -10.58 -0.03 -2.64 16 20 H 0.08 1.84 8.14 -2.39 -0.02 1.82 16 21 C -0.13 -4.28 6.34 31.16 0.20 -4.08 16 22 C -0.19 -8.20 9.88 30.59 0.30 -7.90 16 23 C -0.17 -8.07 9.46 30.59 0.29 -7.78 16 24 H 0.26 14.09 8.32 -92.71 -0.77 13.32 16 25 H 0.00 -0.04 8.14 -2.39 -0.02 -0.06 16 26 H 0.05 2.05 7.74 -2.39 -0.02 2.03 16 27 H 0.34 15.52 7.14 -89.69 -0.64 14.88 16 28 H 0.07 2.31 7.73 -2.39 -0.02 2.30 16 29 H 0.08 1.85 8.14 -2.39 -0.02 1.83 16 30 H 0.06 1.92 7.98 -2.39 -0.02 1.90 16 31 H 0.08 1.31 8.14 -2.39 -0.02 1.29 16 32 H 0.07 1.25 8.14 -2.39 -0.02 1.23 16 33 H 0.06 1.15 8.14 -2.39 -0.02 1.13 16 34 H 0.08 1.16 8.14 -2.39 -0.02 1.14 16 35 H 0.05 1.25 8.14 -2.39 -0.02 1.23 16 36 H 0.07 1.39 8.14 -2.39 -0.02 1.37 16 37 H 0.04 1.66 7.65 -2.39 -0.02 1.64 16 38 H 0.05 1.71 8.14 -2.39 -0.02 1.69 16 39 H 0.09 3.40 8.08 -2.38 -0.02 3.38 16 40 H 0.07 3.19 8.14 -2.39 -0.02 3.17 16 41 H 0.06 2.90 8.14 -2.39 -0.02 2.89 16 42 H 0.07 3.16 8.14 -2.39 -0.02 3.14 16 Total: -1.00 -56.86 327.68 2.52 -54.35 By element: Atomic # 1 Polarization: 29.25 SS G_CDS: 0.32 Total: 29.57 kcal Atomic # 6 Polarization: -50.43 SS G_CDS: 2.77 Total: -47.65 kcal Atomic # 7 Polarization: -79.16 SS G_CDS: -2.61 Total: -81.76 kcal Atomic # 14 Polarization: 43.47 SS G_CDS: 2.03 Total: 45.50 kcal Total: -56.86 2.52 -54.35 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000902979916.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.218 kcal (2) G-P(sol) polarization free energy of solvation -56.862 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.644 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.517 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.345 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.127 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds