Wall clock time and date at job start Mon Mar 30 2020 06:22:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30860 * 1 3 3 Si 1.86800 * 119.99926 * 2 1 4 4 H 1.48503 * 109.46854 * 180.02562 * 3 2 1 5 5 H 1.48504 * 109.46798 * 300.00070 * 3 2 1 6 6 H 1.48498 * 109.46921 * 60.00191 * 3 2 1 7 7 C 1.39926 * 119.99841 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99764 * 159.48572 * 7 2 1 9 9 C 1.41236 * 120.00382 * 339.75755 * 7 2 1 10 10 C 1.40890 * 120.25077 * 314.70248 * 9 7 2 11 11 Cl 1.73603 * 120.12706 * 0.02562 * 10 9 7 12 12 C 1.37699 * 119.74215 * 179.71711 * 10 9 7 13 13 C 1.38755 * 120.25038 * 0.58517 * 12 10 9 14 14 Cl 1.73605 * 119.74267 * 179.71427 * 13 12 10 15 15 C 1.38764 * 120.51337 * 359.68912 * 13 12 10 16 16 C 1.37691 * 120.25661 * 0.02562 * 15 13 12 17 17 Cl 1.73599 * 120.13542 * 180.02562 * 16 15 13 18 18 H 0.96994 * 120.00114 * 5.65926 * 1 2 3 19 19 H 1.07998 * 119.87152 * 180.27314 * 12 10 9 20 20 H 1.08001 * 119.86740 * 180.02562 * 15 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3086 0.0000 0.0000 3 14 2.2426 1.6177 0.0000 4 1 3.7026 1.3463 -0.0006 5 1 1.8837 2.3964 -1.2125 6 1 1.8838 2.3964 1.2125 7 6 2.0082 -1.2118 -0.0005 8 1 3.0369 -1.2413 -0.3283 9 6 1.3675 -2.3974 0.4221 10 6 0.5862 -2.4028 1.5945 11 17 0.4053 -0.9501 2.5278 12 6 -0.0386 -3.5631 1.9938 13 6 0.1089 -4.7270 1.2529 14 17 -0.6787 -6.1843 1.7724 15 6 0.8806 -4.7350 0.0996 16 6 1.5099 -3.5853 -0.3221 17 17 2.4740 -3.5987 -1.7657 18 1 -0.4850 0.8359 -0.0828 19 1 -0.6416 -3.5684 2.8897 20 1 0.9879 -5.6467 -0.4693 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000006091201.mol2 20 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:22:09 Heat of formation + Delta-G solvation = -14.398502 kcal Electronic energy + Delta-G solvation = -11830.738799 eV Core-core repulsion = 9297.338863 eV Total energy + Delta-G solvation = -2533.399935 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 249.941 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -38.03619 -35.77371 -35.42378 -34.72935 -33.70860 -29.98048 -29.51144 -25.36517 -21.60329 -21.20541 -17.69271 -16.16579 -15.37115 -14.66511 -14.30789 -13.18752 -13.16354 -12.96474 -12.14713 -11.70255 -11.50768 -11.18748 -11.14909 -11.01441 -10.64835 -10.39084 -10.16413 -9.85435 -9.67698 -9.56834 -8.84210 -7.68822 -7.36626 -6.94684 -4.66826 2.23675 2.29255 2.81484 2.98855 3.04659 3.08798 3.51536 3.71299 3.85741 4.31059 4.98275 5.80613 6.07172 6.41517 6.60253 6.79941 7.00711 7.09315 7.40760 7.46439 8.10026 8.35240 8.58826 10.02008 Molecular weight = 249.94amu Principal moments of inertia in cm(-1) A = 0.025304 B = 0.010260 C = 0.007635 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1106.297967 B = 2728.314557 C = 3666.286574 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.763 5.763 2 C 0.090 3.910 3 Si 0.903 3.097 4 H -0.257 1.257 5 H -0.273 1.273 6 H -0.269 1.269 7 C -0.451 4.451 8 H 0.094 0.906 9 C 0.129 3.871 10 C -0.066 4.066 11 Cl -0.078 7.078 12 C -0.072 4.072 13 C -0.131 4.131 14 Cl -0.108 7.108 15 C -0.069 4.069 16 C -0.102 4.102 17 Cl -0.092 7.092 18 H 0.286 0.714 19 H 0.115 0.885 20 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.711 -2.448 1.312 2.868 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.385 5.385 2 C -0.133 4.133 3 Si 0.727 3.273 4 H -0.181 1.181 5 H -0.199 1.199 6 H -0.194 1.194 7 C -0.478 4.478 8 H 0.112 0.888 9 C 0.125 3.875 10 C -0.095 4.095 11 Cl -0.049 7.049 12 C -0.092 4.092 13 C -0.159 4.159 14 Cl -0.080 7.080 15 C -0.089 4.089 16 C -0.130 4.130 17 Cl -0.063 7.063 18 H 0.097 0.903 19 H 0.133 0.867 20 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 0.496 -2.276 1.368 2.701 hybrid contribution 0.150 0.753 -0.061 0.771 sum 0.646 -1.522 1.307 2.108 Atomic orbital electron populations 1.69783 1.07754 1.30265 1.30742 1.25712 0.94583 1.00899 0.92110 0.86299 0.81341 0.80957 0.78729 1.18063 1.19853 1.19446 1.19435 0.99723 0.90436 1.38236 0.88774 1.17154 0.89752 0.91916 0.88688 1.20544 1.07598 0.86005 0.95324 1.98233 1.96475 1.38653 1.71557 1.20393 0.99015 0.90549 0.99246 1.19689 1.08683 0.86876 1.00657 1.98252 1.80659 1.38173 1.90952 1.20335 0.96677 0.96855 0.95063 1.20548 1.05228 0.95672 0.91538 1.98239 1.71114 1.98761 1.38221 0.90310 0.86653 0.86599 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.76 -18.47 11.21 55.55 0.62 -17.85 14 2 C 0.09 2.10 3.78 -17.33 -0.07 2.03 14 3 Si 0.90 18.10 29.61 -169.99 -5.03 13.07 14 4 H -0.26 -5.11 7.11 56.52 0.40 -4.71 14 5 H -0.27 -5.37 7.11 56.52 0.40 -4.97 14 6 H -0.27 -5.39 7.11 56.52 0.40 -4.99 14 7 C -0.45 -10.97 7.80 -37.81 -0.30 -11.26 14 8 H 0.09 2.26 7.75 -52.48 -0.41 1.86 14 9 C 0.13 3.14 5.25 -106.75 -0.56 2.58 14 10 C -0.07 -1.55 5.94 -38.78 -0.23 -1.78 14 11 Cl -0.08 -1.73 25.00 -51.86 -1.30 -3.03 14 12 C -0.07 -1.55 9.58 -39.59 -0.38 -1.92 14 13 C -0.13 -2.70 6.34 -39.20 -0.25 -2.95 14 14 Cl -0.11 -1.92 28.94 -51.86 -1.50 -3.42 14 15 C -0.07 -1.45 9.58 -39.59 -0.38 -1.83 14 16 C -0.10 -2.30 6.37 -38.78 -0.25 -2.54 14 17 Cl -0.09 -1.88 27.94 -51.86 -1.45 -3.33 14 18 H 0.29 6.38 8.31 -40.82 -0.34 6.04 14 19 H 0.12 2.26 8.06 -52.49 -0.42 1.84 14 20 H 0.12 2.18 8.06 -52.49 -0.42 1.75 14 LS Contribution 230.85 15.07 3.48 3.48 Total: -1.00 -23.96 230.85 -7.97 -31.93 By element: Atomic # 1 Polarization: -2.79 SS G_CDS: -0.39 Total: -3.18 kcal Atomic # 6 Polarization: -15.27 SS G_CDS: -2.41 Total: -17.67 kcal Atomic # 7 Polarization: -18.47 SS G_CDS: 0.62 Total: -17.85 kcal Atomic # 14 Polarization: 18.10 SS G_CDS: -5.03 Total: 13.07 kcal Atomic # 17 Polarization: -5.53 SS G_CDS: -4.25 Total: -9.77 kcal Total LS contribution 3.48 Total: 3.48 kcal Total: -23.96 -7.97 -31.93 kcal The number of atoms in the molecule is 20 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000006091201.mol2 20 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.532 kcal (2) G-P(sol) polarization free energy of solvation -23.959 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.428 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.971 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.930 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.399 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds