Wall clock time and date at job start Mon Mar 30 2020 06:31:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13600 * 1 3 3 C 1.43203 * 179.97438 * 2 1 4 4 C 1.39861 * 120.07831 * 24.80289 * 3 2 1 5 5 C 1.37596 * 119.94373 * 179.67236 * 4 3 2 6 6 C 1.39319 * 120.09712 * 0.61801 * 5 4 3 7 7 N 1.39133 * 119.91989 * 179.69780 * 6 5 4 8 8 C 1.34780 * 119.99854 * 324.80821 * 7 6 5 9 9 O 1.21737 * 119.99982 * 4.56700 * 8 7 6 10 10 C 1.46141 * 119.99868 * 184.56731 * 8 7 6 11 11 H 1.07999 * 120.00221 * 0.02562 * 10 8 7 12 12 C 1.40137 * 120.00172 * 179.97438 * 10 8 7 13 13 N 1.30628 * 119.99718 * 0.02562 * 12 10 8 14 14 Si 1.86802 * 120.00121 * 180.02562 * 12 10 8 15 15 H 1.48489 * 109.46985 * 90.00017 * 14 12 10 16 16 H 1.48499 * 109.47024 * 210.00563 * 14 12 10 17 17 H 1.48506 * 109.46831 * 329.99973 * 14 12 10 18 18 C 1.39175 * 120.15890 * 359.67821 * 6 5 4 19 19 C 1.37818 * 120.05516 * 359.97438 * 18 6 5 20 20 Cl 1.73601 * 120.05329 * 180.02562 * 19 18 6 21 21 H 1.07998 * 120.03064 * 359.96956 * 4 3 2 22 22 H 1.07996 * 119.94920 * 180.29303 * 5 4 3 23 23 H 0.96995 * 120.00081 * 144.80967 * 7 6 5 24 24 H 0.96995 * 120.00324 * 180.02562 * 13 12 10 25 25 H 1.08001 * 119.97836 * 180.02562 * 18 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2695 -1.0977 -0.5077 5 6 4.6454 -1.0913 -0.5125 6 6 5.3408 0.0021 -0.0007 7 7 6.7321 0.0020 -0.0017 8 6 7.4060 -1.1473 0.2023 9 8 6.8002 -2.1983 0.3044 10 6 8.8640 -1.1318 0.3008 11 1 9.4015 -0.1994 0.2107 12 6 9.5647 -2.3266 0.5134 13 7 8.9147 -3.4543 0.6230 14 14 11.4283 -2.3066 0.6401 15 1 11.8260 -2.1115 2.0574 16 1 11.9719 -3.5974 0.1466 17 1 11.9685 -1.1950 -0.1832 18 6 4.6470 1.0946 0.5112 19 6 3.2688 1.0981 0.5127 20 17 2.4035 2.4611 1.1506 21 1 2.7317 -1.9481 -0.9000 22 1 5.1871 -1.9373 -0.9089 23 1 7.2171 0.8289 -0.1491 24 1 9.3995 -4.2813 0.7705 25 1 5.1890 1.9408 0.9069 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000037393494.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:31:29 Heat of formation + Delta-G solvation = -12.275312 kcal Electronic energy + Delta-G solvation = -14728.166864 eV Core-core repulsion = 11924.708528 eV Total energy + Delta-G solvation = -2803.458337 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 250.025 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.10556 -39.25366 -37.57535 -37.42332 -35.31337 -34.53319 -31.90624 -31.15517 -28.41186 -24.78881 -23.96778 -21.94165 -20.06757 -19.54827 -18.19439 -17.59116 -16.67589 -16.00730 -15.76932 -15.30407 -15.22987 -14.91704 -14.66217 -14.34297 -13.89173 -13.79633 -13.35030 -13.15022 -12.86263 -12.70985 -12.64772 -12.40813 -12.07808 -11.99997 -11.07982 -10.85365 -10.03011 -9.77553 -8.98068 -8.35824 -6.92457 -0.33347 0.20671 0.88964 1.43461 1.45425 1.57853 1.60378 1.84209 2.22744 2.40863 2.70609 2.80311 2.92502 3.55906 3.77375 4.17051 4.27392 4.35439 4.71650 4.82904 5.18355 5.28778 5.34872 5.50105 5.78561 6.14729 6.19881 6.40469 6.80759 7.27331 8.32418 8.56613 Molecular weight = 250.02amu Principal moments of inertia in cm(-1) A = 0.046593 B = 0.004911 C = 0.004523 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 600.806320 B = 5699.780166 C = 6189.638520 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.451 5.451 2 C 0.283 3.717 3 C -0.074 4.074 4 C -0.023 4.023 5 C -0.147 4.147 6 C 0.217 3.783 7 N -0.683 5.683 8 C 0.529 3.471 9 O -0.598 6.598 10 C -0.559 4.559 11 H 0.096 0.904 12 C 0.033 3.967 13 N -0.808 5.808 14 Si 0.995 3.005 15 H -0.264 1.264 16 H -0.276 1.276 17 H -0.247 1.247 18 C -0.153 4.153 19 C 0.036 3.964 20 Cl -0.052 7.052 21 H 0.159 0.841 22 H 0.128 0.872 23 H 0.415 0.585 24 H 0.278 0.722 25 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.102 9.176 -1.223 9.763 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.127 5.127 2 C -0.031 4.031 3 C -0.080 4.080 4 C -0.044 4.044 5 C -0.169 4.169 6 C 0.115 3.885 7 N -0.327 5.327 8 C 0.337 3.663 9 O -0.483 6.483 10 C -0.594 4.594 11 H 0.114 0.886 12 C -0.184 4.184 13 N -0.437 5.437 14 Si 0.815 3.185 15 H -0.189 1.189 16 H -0.201 1.201 17 H -0.170 1.170 18 C -0.175 4.175 19 C 0.006 3.994 20 Cl -0.022 7.022 21 H 0.176 0.824 22 H 0.146 0.854 23 H 0.252 0.748 24 H 0.088 0.912 25 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges -5.247 8.348 -1.053 9.916 hybrid contribution 1.273 0.151 0.119 1.287 sum -3.974 8.498 -0.934 9.428 Atomic orbital electron populations 1.81190 1.12504 1.08656 1.10391 1.25428 0.92281 0.92807 0.92626 1.15687 0.84027 0.97097 1.11219 1.21101 0.92851 0.96016 0.94479 1.21391 0.93932 0.99895 1.01651 1.18193 0.84942 0.94069 0.91251 1.43761 1.02887 1.13183 1.72834 1.18696 0.89166 0.81533 0.76905 1.90608 1.70172 1.31626 1.55861 1.21395 0.89771 0.96133 1.52122 0.88568 1.26908 1.06049 0.94083 0.91393 1.70103 1.39662 0.99833 1.34054 0.85027 0.74956 0.78934 0.79569 1.18872 1.20085 1.17035 1.20783 0.91344 1.01089 1.04238 1.20540 0.91844 0.88675 0.98366 1.98384 1.76381 1.42643 1.84835 0.82351 0.85370 0.74799 0.91186 0.81706 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.45 -14.23 18.54 19.00 0.35 -13.88 15 2 C 0.28 8.13 14.38 88.33 1.27 9.40 15 3 C -0.07 -2.06 5.75 -21.23 -0.12 -2.18 15 4 C -0.02 -0.66 9.75 22.51 0.22 -0.44 15 5 C -0.15 -5.22 8.66 22.38 0.19 -5.02 15 6 C 0.22 7.39 6.29 38.47 0.24 7.64 15 7 N -0.68 -25.82 5.30 -307.53 -1.63 -27.45 15 8 C 0.53 26.48 7.57 86.29 0.65 27.13 15 9 O -0.60 -34.50 12.42 -4.47 -0.06 -34.56 15 10 C -0.56 -27.65 9.53 24.78 0.24 -27.41 15 11 H 0.10 4.16 7.85 -2.91 -0.02 4.14 15 12 C 0.03 1.64 5.50 85.33 0.47 2.11 15 13 N -0.81 -44.66 11.82 21.85 0.26 -44.40 15 14 Si 1.00 36.69 29.56 68.60 2.03 38.72 15 15 H -0.26 -9.41 7.11 99.48 0.71 -8.70 15 16 H -0.28 -10.00 7.11 99.48 0.71 -9.29 15 17 H -0.25 -8.40 7.11 99.48 0.71 -7.69 15 18 C -0.15 -4.13 9.73 22.40 0.22 -3.91 15 19 C 0.04 0.95 6.34 22.58 0.14 1.09 15 20 Cl -0.05 -1.23 28.02 -2.72 -0.08 -1.31 15 21 H 0.16 3.74 8.06 -2.91 -0.02 3.72 15 22 H 0.13 5.45 6.20 -2.91 -0.02 5.43 15 23 H 0.42 12.61 8.79 -92.71 -0.82 11.79 15 24 H 0.28 13.99 8.29 -92.71 -0.77 13.22 15 25 H 0.17 3.58 8.06 -2.91 -0.02 3.56 15 Total: -1.00 -63.16 257.74 4.85 -58.31 By element: Atomic # 1 Polarization: 15.72 SS G_CDS: 0.45 Total: 16.17 kcal Atomic # 6 Polarization: 4.89 SS G_CDS: 3.52 Total: 8.41 kcal Atomic # 7 Polarization: -84.71 SS G_CDS: -1.02 Total: -85.73 kcal Atomic # 8 Polarization: -34.50 SS G_CDS: -0.06 Total: -34.56 kcal Atomic # 14 Polarization: 36.69 SS G_CDS: 2.03 Total: 38.72 kcal Atomic # 17 Polarization: -1.23 SS G_CDS: -0.08 Total: -1.31 kcal Total: -63.16 4.85 -58.31 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000037393494.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.030 kcal (2) G-P(sol) polarization free energy of solvation -63.156 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.126 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.851 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.306 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.275 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds