Wall clock time and date at job start Mon Mar 30 2020 06:43:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86805 * 119.99878 * 2 1 4 4 H 1.48504 * 109.46980 * 264.63167 * 3 2 1 5 5 H 1.48503 * 109.47136 * 24.63350 * 3 2 1 6 6 H 1.48494 * 109.47277 * 144.63254 * 3 2 1 7 7 C 1.37871 * 120.00332 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00182 * 7.01455 * 7 2 1 9 9 C 1.50707 * 120.00172 * 187.01383 * 7 2 1 10 10 H 1.09001 * 109.25749 * 24.94863 * 9 7 2 11 11 C 1.50867 * 109.27029 * 265.44028 * 9 7 2 12 12 C 1.39596 * 126.82821 * 39.53482 * 11 9 7 13 13 C 1.37695 * 121.06164 * 179.76953 * 12 11 9 14 14 C 1.38329 * 120.54258 * 0.02562 * 13 12 11 15 15 C 1.38021 * 119.28813 * 0.08796 * 14 13 12 16 16 C 1.38824 * 120.16188 * 0.02562 * 15 14 13 17 17 S 1.77430 * 130.56620 * 179.72131 * 16 15 14 18 18 C 1.54139 * 109.26808 * 144.45352 * 9 7 2 19 19 H 1.08998 * 111.09849 * 30.42504 * 18 9 7 20 20 C 1.50700 * 111.09651 * 266.33263 * 18 9 7 21 21 O 1.20825 * 120.00234 * 329.99671 * 20 18 9 22 22 O 1.34224 * 119.99966 * 150.00559 * 20 18 9 23 23 H 0.97001 * 120.00436 * 0.02562 * 1 2 3 24 24 H 1.08003 * 119.47410 * 359.78145 * 12 11 9 25 25 H 1.07998 * 119.73108 * 180.02562 * 13 12 11 26 26 H 1.08002 * 120.35183 * 180.11502 * 14 13 12 27 27 H 1.08001 * 119.91630 * 180.02562 * 15 14 13 28 28 H 0.96694 * 117.00429 * 180.02562 * 22 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.6100 1.9810 -1.3940 5 1 1.3944 2.6828 0.5836 6 1 3.4853 1.4757 0.8103 7 6 2.0045 -1.1940 0.0005 8 1 1.4707 -2.1259 -0.1133 9 6 3.5032 -1.1987 0.1599 10 1 3.8117 -0.2949 0.6853 11 6 4.1488 -1.2273 -1.2034 12 6 3.7316 -0.5348 -2.3414 13 6 4.4166 -0.6447 -3.5308 14 6 5.5385 -1.4485 -3.6242 15 6 5.9659 -2.1433 -2.5109 16 6 5.2738 -2.0342 -1.3124 17 16 5.5680 -2.7950 0.2633 18 6 3.9234 -2.4333 0.9815 19 1 3.2355 -3.2636 0.8218 20 6 4.0340 -2.0979 2.4466 21 8 4.3425 -0.9810 2.7890 22 8 3.7900 -3.0400 3.3710 23 1 -0.4851 0.8400 -0.0004 24 1 2.8577 0.0976 -2.2881 25 1 4.0751 -0.0989 -4.3979 26 1 6.0745 -1.5310 -4.5582 27 1 6.8408 -2.7735 -2.5723 28 1 3.8733 -2.7775 4.2979 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000039040156.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:43:43 Heat of formation + Delta-G solvation = -61.319908 kcal Electronic energy + Delta-G solvation = -15970.955825 eV Core-core repulsion = 13270.954805 eV Total energy + Delta-G solvation = -2700.001020 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 250.045 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -39.91037 -38.76235 -35.90153 -34.67002 -32.18502 -30.35664 -29.49727 -26.70655 -23.52621 -22.15416 -21.24448 -19.74535 -18.03019 -17.61987 -17.10513 -15.84809 -15.54924 -15.13211 -14.85454 -14.16115 -13.81368 -13.38071 -13.01790 -12.79304 -12.40370 -12.35448 -11.94820 -11.67354 -11.25306 -10.92766 -10.76373 -10.35389 -10.18311 -9.94669 -9.77027 -9.63408 -9.15416 -8.83981 -8.12904 -7.02262 -6.34082 -4.38439 1.48250 1.75053 1.86615 2.49742 2.96215 3.15074 3.25352 3.31770 3.41996 4.19703 4.21253 4.88120 5.14804 5.31900 5.44480 5.50131 5.64405 5.78247 5.94374 6.09117 6.31237 6.53012 6.66900 6.76799 6.81920 6.88862 7.06413 7.30553 7.46167 8.16386 8.24020 8.67247 9.24369 10.76784 Molecular weight = 250.05amu Principal moments of inertia in cm(-1) A = 0.015569 B = 0.014463 C = 0.008524 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1798.000276 B = 1935.546851 C = 3283.892555 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.881 5.881 2 C 0.086 3.914 3 Si 0.855 3.145 4 H -0.265 1.265 5 H -0.283 1.283 6 H -0.252 1.252 7 C -0.517 4.517 8 H 0.084 0.916 9 C 0.034 3.966 10 H 0.093 0.907 11 C -0.053 4.053 12 C -0.086 4.086 13 C -0.122 4.122 14 C -0.126 4.126 15 C -0.090 4.090 16 C -0.102 4.102 17 S -0.142 6.142 18 C -0.033 4.033 19 H 0.132 0.868 20 C 0.512 3.488 21 O -0.497 6.497 22 O -0.512 6.512 23 H 0.270 0.730 24 H 0.128 0.872 25 H 0.119 0.881 26 H 0.123 0.877 27 H 0.118 0.882 28 H 0.408 0.592 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.910 -3.416 -1.498 9.659 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.516 5.516 2 C -0.119 4.119 3 Si 0.681 3.319 4 H -0.190 1.190 5 H -0.209 1.209 6 H -0.177 1.177 7 C -0.555 4.555 8 H 0.102 0.898 9 C 0.014 3.986 10 H 0.110 0.890 11 C -0.058 4.058 12 C -0.106 4.106 13 C -0.142 4.142 14 C -0.145 4.145 15 C -0.113 4.113 16 C -0.214 4.214 17 S 0.101 5.899 18 C -0.162 4.162 19 H 0.150 0.850 20 C 0.351 3.649 21 O -0.384 6.384 22 O -0.323 6.323 23 H 0.080 0.920 24 H 0.146 0.854 25 H 0.137 0.863 26 H 0.141 0.859 27 H 0.136 0.864 28 H 0.266 0.734 Dipole moment (debyes) X Y Z Total from point charges 9.790 -3.763 -1.213 10.559 hybrid contribution -0.722 1.648 -0.004 1.799 sum 9.068 -2.115 -1.217 9.391 Atomic orbital electron populations 1.69868 1.06178 1.27625 1.47925 1.24976 0.94693 0.98814 0.93439 0.87251 0.81180 0.83832 0.79614 1.19037 1.20911 1.17672 1.20721 0.86930 0.95565 1.52259 0.89819 1.18908 0.98485 0.93563 0.87620 0.89000 1.21628 0.92414 0.94225 0.97576 1.21024 0.99374 0.99116 0.91077 1.20951 0.96043 0.99644 0.97541 1.20877 0.97659 0.98382 0.97620 1.20233 0.99776 1.00723 0.90599 1.22004 1.00041 1.03380 0.95977 1.85526 1.19844 1.73160 1.11368 1.23785 0.96359 1.05720 0.90377 0.85034 1.22291 0.72275 0.82246 0.88075 1.90683 1.43221 1.22606 1.81909 1.84515 1.82942 1.44311 1.20573 0.92024 0.85428 0.86263 0.85916 0.86366 0.73414 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.31 13.96 55.43 0.77 -24.54 15 2 C 0.09 2.34 5.23 -17.82 -0.09 2.25 15 3 Si 0.85 20.70 25.30 -169.99 -4.30 16.40 15 4 H -0.27 -6.05 6.56 56.52 0.37 -5.68 15 5 H -0.28 -6.83 7.11 56.52 0.40 -6.43 15 6 H -0.25 -6.21 6.04 56.52 0.34 -5.87 15 7 C -0.52 -13.62 8.21 -34.44 -0.28 -13.91 15 8 H 0.08 2.37 7.95 -52.48 -0.42 1.95 15 9 C 0.03 0.79 1.72 -92.24 -0.16 0.63 15 10 H 0.09 2.34 3.95 -51.93 -0.21 2.13 15 11 C -0.05 -1.16 5.45 -103.80 -0.57 -1.73 15 12 C -0.09 -1.78 8.77 -39.27 -0.34 -2.13 15 13 C -0.12 -2.06 10.00 -39.75 -0.40 -2.46 15 14 C -0.13 -1.91 10.08 -39.63 -0.40 -2.31 15 15 C -0.09 -1.48 10.05 -39.44 -0.40 -1.88 15 16 C -0.10 -2.00 6.48 -39.13 -0.25 -2.25 15 17 S -0.14 -2.67 22.53 -107.50 -2.42 -5.09 15 18 C -0.03 -0.69 3.35 -27.29 -0.09 -0.78 15 19 H 0.13 2.62 7.85 -51.93 -0.41 2.22 15 20 C 0.51 10.11 7.56 36.01 0.27 10.38 15 21 O -0.50 -11.07 16.53 -18.75 -0.31 -11.38 15 22 O -0.51 -7.91 13.42 -39.24 -0.53 -8.44 15 23 H 0.27 7.29 8.31 -40.82 -0.34 6.95 15 24 H 0.13 2.81 5.33 -52.48 -0.28 2.53 15 25 H 0.12 1.67 8.06 -52.49 -0.42 1.25 15 26 H 0.12 1.43 8.06 -52.49 -0.42 1.00 15 27 H 0.12 1.64 8.06 -52.49 -0.42 1.22 15 28 H 0.41 4.16 9.10 45.56 0.41 4.57 15 LS Contribution 255.01 15.07 3.84 3.84 Total: -1.00 -30.49 255.01 -7.04 -37.54 By element: Atomic # 1 Polarization: 7.23 SS G_CDS: -1.39 Total: 5.84 kcal Atomic # 6 Polarization: -11.46 SS G_CDS: -2.71 Total: -14.17 kcal Atomic # 7 Polarization: -25.31 SS G_CDS: 0.77 Total: -24.54 kcal Atomic # 8 Polarization: -18.98 SS G_CDS: -0.84 Total: -19.82 kcal Atomic # 14 Polarization: 20.70 SS G_CDS: -4.30 Total: 16.40 kcal Atomic # 16 Polarization: -2.67 SS G_CDS: -2.42 Total: -5.09 kcal Total LS contribution 3.84 Total: 3.84 kcal Total: -30.49 -7.04 -37.54 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000039040156.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.782 kcal (2) G-P(sol) polarization free energy of solvation -30.495 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.277 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.043 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.538 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.320 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds