Wall clock time and date at job start Mon Mar 30 2020 06:43:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86805 * 119.99878 * 2 1 4 4 H 1.48504 * 109.46980 * 264.63167 * 3 2 1 5 5 H 1.48503 * 109.47136 * 24.63350 * 3 2 1 6 6 H 1.48494 * 109.47277 * 144.63254 * 3 2 1 7 7 C 1.37871 * 120.00332 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00182 * 7.01455 * 7 2 1 9 9 C 1.50707 * 120.00172 * 187.01383 * 7 2 1 10 10 H 1.09001 * 109.25749 * 24.94863 * 9 7 2 11 11 C 1.50867 * 109.27029 * 265.44028 * 9 7 2 12 12 C 1.39596 * 126.82821 * 39.53482 * 11 9 7 13 13 C 1.37695 * 121.06164 * 179.76953 * 12 11 9 14 14 C 1.38329 * 120.54258 * 0.02562 * 13 12 11 15 15 C 1.38021 * 119.28813 * 0.08796 * 14 13 12 16 16 C 1.38824 * 120.16188 * 0.02562 * 15 14 13 17 17 S 1.77430 * 130.56620 * 179.72131 * 16 15 14 18 18 C 1.54139 * 109.26808 * 144.45352 * 9 7 2 19 19 H 1.08998 * 111.09849 * 30.42504 * 18 9 7 20 20 C 1.50700 * 111.09651 * 266.33263 * 18 9 7 21 21 O 1.20825 * 120.00234 * 329.99671 * 20 18 9 22 22 O 1.34224 * 119.99966 * 150.00559 * 20 18 9 23 23 H 0.97001 * 120.00436 * 0.02562 * 1 2 3 24 24 H 1.08003 * 119.47410 * 359.78145 * 12 11 9 25 25 H 1.07998 * 119.73108 * 180.02562 * 13 12 11 26 26 H 1.08002 * 120.35183 * 180.11502 * 14 13 12 27 27 H 1.08001 * 119.91630 * 180.02562 * 15 14 13 28 28 H 0.96694 * 117.00429 * 180.02562 * 22 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.6100 1.9810 -1.3940 5 1 1.3944 2.6828 0.5836 6 1 3.4853 1.4757 0.8103 7 6 2.0045 -1.1940 0.0005 8 1 1.4707 -2.1259 -0.1133 9 6 3.5032 -1.1987 0.1599 10 1 3.8117 -0.2949 0.6853 11 6 4.1488 -1.2273 -1.2034 12 6 3.7316 -0.5348 -2.3414 13 6 4.4166 -0.6447 -3.5308 14 6 5.5385 -1.4485 -3.6242 15 6 5.9659 -2.1433 -2.5109 16 6 5.2738 -2.0342 -1.3124 17 16 5.5680 -2.7950 0.2633 18 6 3.9234 -2.4333 0.9815 19 1 3.2355 -3.2636 0.8218 20 6 4.0340 -2.0979 2.4466 21 8 4.3425 -0.9810 2.7890 22 8 3.7900 -3.0400 3.3710 23 1 -0.4851 0.8400 -0.0004 24 1 2.8577 0.0976 -2.2881 25 1 4.0751 -0.0989 -4.3979 26 1 6.0745 -1.5310 -4.5582 27 1 6.8408 -2.7735 -2.5723 28 1 3.8733 -2.7775 4.2979 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000039040156.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:43:43 Heat of formation + Delta-G solvation = -81.430263 kcal Electronic energy + Delta-G solvation = -15971.827875 eV Core-core repulsion = 13270.954805 eV Total energy + Delta-G solvation = -2700.873070 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 250.045 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.45259 -40.20178 -37.35841 -36.35658 -34.15874 -31.76729 -30.96982 -28.56397 -25.14972 -23.64274 -22.70523 -21.38330 -19.76638 -19.24492 -18.67851 -17.40613 -17.07975 -16.73821 -16.41486 -15.75901 -15.36936 -14.95674 -14.74309 -14.49350 -13.89675 -13.83014 -13.67968 -13.26862 -12.71377 -12.59447 -12.38827 -12.05127 -11.86232 -11.75078 -11.66331 -11.23081 -10.89212 -10.62462 -9.60239 -8.48409 -8.45174 -6.50917 -0.03336 0.32705 0.46411 1.00424 1.21443 1.26898 1.35140 1.39638 1.97094 2.20044 2.79360 2.87731 3.48520 3.93929 4.04103 4.08913 4.21001 4.42581 4.53298 4.66768 4.82453 4.90434 5.13126 5.25733 5.40110 5.44743 5.53846 5.69667 6.03905 6.07242 6.53468 6.87296 7.14379 8.69682 Molecular weight = 250.05amu Principal moments of inertia in cm(-1) A = 0.015569 B = 0.014463 C = 0.008524 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1798.000276 B = 1935.546851 C = 3283.892555 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.926 5.926 2 C 0.043 3.957 3 Si 0.904 3.096 4 H -0.244 1.244 5 H -0.282 1.282 6 H -0.261 1.261 7 C -0.510 4.510 8 H 0.051 0.949 9 C 0.036 3.964 10 H 0.069 0.931 11 C -0.090 4.090 12 C -0.114 4.114 13 C -0.117 4.117 14 C -0.104 4.104 15 C -0.085 4.085 16 C -0.119 4.119 17 S -0.108 6.108 18 C -0.048 4.048 19 H 0.131 0.869 20 C 0.517 3.483 21 O -0.528 6.528 22 O -0.497 6.497 23 H 0.271 0.729 24 H 0.103 0.897 25 H 0.150 0.850 26 H 0.173 0.827 27 H 0.152 0.848 28 H 0.433 0.567 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.516 -3.893 -3.150 12.557 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.564 5.564 2 C -0.158 4.158 3 Si 0.729 3.271 4 H -0.168 1.168 5 H -0.208 1.208 6 H -0.186 1.186 7 C -0.549 4.549 8 H 0.070 0.930 9 C 0.017 3.983 10 H 0.087 0.913 11 C -0.095 4.095 12 C -0.134 4.134 13 C -0.137 4.137 14 C -0.123 4.123 15 C -0.108 4.108 16 C -0.231 4.231 17 S 0.135 5.865 18 C -0.177 4.177 19 H 0.149 0.851 20 C 0.357 3.643 21 O -0.418 6.418 22 O -0.311 6.311 23 H 0.081 0.919 24 H 0.121 0.879 25 H 0.168 0.832 26 H 0.191 0.809 27 H 0.170 0.830 28 H 0.295 0.705 Dipole moment (debyes) X Y Z Total from point charges 12.402 -4.260 -2.850 13.419 hybrid contribution -1.467 1.659 0.460 2.262 sum 10.935 -2.601 -2.390 11.492 Atomic orbital electron populations 1.69973 1.07551 1.28381 1.50461 1.25563 0.95165 1.01610 0.93477 0.86469 0.79558 0.80589 0.80513 1.16813 1.20810 1.18627 1.20812 0.88944 0.94124 1.50980 0.93039 1.18744 0.96403 0.93890 0.89290 0.91316 1.21388 0.94421 0.96925 0.96812 1.21068 0.99764 0.99902 0.92641 1.21334 0.95950 0.99547 0.96849 1.21445 0.96288 0.95658 0.98940 1.20747 1.00076 1.00516 0.89501 1.22297 1.00059 1.03349 0.97398 1.85276 1.17493 1.72797 1.10961 1.23640 0.98331 1.04556 0.91162 0.85121 1.22139 0.71674 0.82157 0.88357 1.90670 1.44945 1.23842 1.82358 1.84451 1.81891 1.42795 1.21977 0.91922 0.87893 0.83189 0.80937 0.82991 0.70498 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.42 13.96 21.44 0.30 -55.12 15 2 C 0.04 2.42 5.23 84.65 0.44 2.86 15 3 Si 0.90 44.02 25.30 68.60 1.74 45.76 15 4 H -0.24 -10.91 6.56 99.48 0.65 -10.25 15 5 H -0.28 -13.51 7.11 99.48 0.71 -12.80 15 6 H -0.26 -13.03 6.04 99.48 0.60 -12.43 15 7 C -0.51 -28.14 8.21 25.60 0.21 -27.93 15 8 H 0.05 3.09 7.95 -2.91 -0.02 3.07 15 9 C 0.04 1.74 1.72 -11.85 -0.02 1.72 15 10 H 0.07 3.60 3.95 -2.39 -0.01 3.59 15 11 C -0.09 -3.93 5.45 -19.33 -0.11 -4.03 15 12 C -0.11 -4.63 8.77 22.47 0.20 -4.43 15 13 C -0.12 -3.55 10.00 22.16 0.22 -3.33 15 14 C -0.10 -2.60 10.08 22.24 0.22 -2.38 15 15 C -0.09 -2.44 10.05 22.36 0.22 -2.21 15 16 C -0.12 -4.42 6.48 22.56 0.15 -4.28 15 17 S -0.11 -3.91 22.53 -56.49 -1.27 -5.18 15 18 C -0.05 -1.99 3.35 30.23 0.10 -1.89 15 19 H 0.13 5.36 7.85 -2.39 -0.02 5.34 15 20 C 0.52 20.43 7.56 71.24 0.54 20.96 15 21 O -0.53 -23.75 16.53 21.97 0.36 -23.38 15 22 O -0.50 -14.84 13.42 -51.36 -0.69 -15.53 15 23 H 0.27 15.24 8.31 -92.71 -0.77 14.47 15 24 H 0.10 4.60 5.33 -2.91 -0.02 4.59 15 25 H 0.15 3.56 8.06 -2.91 -0.02 3.54 15 26 H 0.17 2.69 8.06 -2.91 -0.02 2.67 15 27 H 0.15 3.34 8.06 -2.91 -0.02 3.32 15 28 H 0.43 8.10 9.10 -74.06 -0.67 7.42 15 Total: -1.00 -68.88 255.01 3.00 -65.88 By element: Atomic # 1 Polarization: 12.14 SS G_CDS: 0.38 Total: 12.52 kcal Atomic # 6 Polarization: -27.13 SS G_CDS: 2.18 Total: -24.95 kcal Atomic # 7 Polarization: -55.42 SS G_CDS: 0.30 Total: -55.12 kcal Atomic # 8 Polarization: -38.59 SS G_CDS: -0.33 Total: -38.91 kcal Atomic # 14 Polarization: 44.02 SS G_CDS: 1.74 Total: 45.76 kcal Atomic # 16 Polarization: -3.91 SS G_CDS: -1.27 Total: -5.18 kcal Total: -68.88 3.00 -65.88 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000039040156.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.550 kcal (2) G-P(sol) polarization free energy of solvation -68.876 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.426 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.995 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.880 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.430 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds