Wall clock time and date at job start Mon Mar 30 2020 06:43:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86808 * 119.99645 * 2 1 4 4 H 1.48501 * 109.46816 * 359.97438 * 3 2 1 5 5 H 1.48503 * 109.46876 * 239.99609 * 3 2 1 6 6 H 1.48496 * 109.47079 * 119.99883 * 3 2 1 7 7 C 1.37877 * 120.00370 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99611 * 181.37735 * 7 2 1 9 9 C 1.50699 * 120.00057 * 1.37100 * 7 2 1 10 10 H 1.08998 * 109.25774 * 24.37076 * 9 7 2 11 11 C 1.50869 * 109.27260 * 264.86097 * 9 7 2 12 12 C 1.39594 * 126.82587 * 79.97185 * 11 9 7 13 13 C 1.37696 * 121.06271 * 180.21410 * 12 11 9 14 14 C 1.38323 * 120.54160 * 359.97438 * 13 12 11 15 15 C 1.38028 * 119.29130 * 359.90148 * 14 13 12 16 16 C 1.38823 * 120.15779 * 0.02562 * 15 14 13 17 17 S 1.77439 * 130.56822 * 180.28334 * 16 15 14 18 18 C 1.54135 * 109.26883 * 143.79242 * 9 7 2 19 19 H 1.08999 * 111.10104 * 210.08139 * 18 9 7 20 20 C 1.50703 * 111.09973 * 334.17098 * 18 9 7 21 21 O 1.20820 * 120.00219 * 274.40800 * 20 18 9 22 22 O 1.34231 * 119.99682 * 94.40370 * 20 18 9 23 23 H 0.97006 * 119.99828 * 177.41822 * 1 2 3 24 24 H 1.07999 * 119.47108 * 0.20733 * 12 11 9 25 25 H 1.07997 * 119.73627 * 180.02562 * 13 12 11 26 26 H 1.08005 * 120.36028 * 179.88471 * 14 13 12 27 27 H 1.07994 * 119.92374 * 180.02562 * 15 14 13 28 28 H 0.96701 * 117.00099 * 180.02562 * 22 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6179 0.0000 4 1 1.2839 2.7465 -0.0006 5 1 3.1028 1.6965 -1.2125 6 1 3.1027 1.6966 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0843 -1.1940 0.0230 9 6 1.2515 -2.4990 -0.0301 10 1 0.2690 -2.3367 -0.4733 11 6 1.0837 -3.0103 1.3793 12 6 0.1351 -2.5916 2.3139 13 6 0.0914 -3.1398 3.5763 14 6 0.9911 -4.1227 3.9474 15 6 1.9353 -4.5524 3.0369 16 6 1.9782 -4.0007 1.7637 17 16 3.0519 -4.3433 0.3932 18 6 2.0317 -3.5166 -0.8854 19 1 1.3566 -4.2245 -1.3662 20 6 2.8971 -2.8193 -1.9032 21 8 2.4326 -2.4944 -2.9702 22 8 4.1841 -2.5590 -1.6243 23 1 -0.4850 -0.8393 -0.0378 24 1 -0.5760 -1.8254 2.0426 25 1 -0.6519 -2.8001 4.2824 26 1 0.9554 -4.5493 4.9389 27 1 2.6425 -5.3196 3.3156 28 1 4.6994 -2.1096 -2.3082 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000039040158.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:43:48 Heat of formation + Delta-G solvation = -66.659973 kcal Electronic energy + Delta-G solvation = -16093.236680 eV Core-core repulsion = 13393.004097 eV Total energy + Delta-G solvation = -2700.232583 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 250.045 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.64504 -38.63496 -35.45742 -34.99377 -31.98940 -30.19988 -29.39764 -25.62303 -23.52839 -22.40274 -21.19350 -20.19823 -17.76846 -17.25617 -16.80178 -15.65507 -15.48905 -14.90691 -14.44744 -14.00875 -13.85402 -13.49917 -12.83037 -12.61640 -12.38284 -12.08186 -11.82230 -11.31855 -11.00120 -10.89926 -10.71819 -10.30988 -10.09566 -10.02854 -9.53393 -9.19638 -9.06457 -8.70831 -8.04521 -6.76886 -6.66512 -4.41680 1.78293 1.96110 2.02120 2.72324 2.97241 3.33150 3.33917 3.52243 3.64387 4.24179 4.36605 5.06978 5.22073 5.40652 5.41212 5.50483 5.73948 5.91165 6.02731 6.16519 6.39192 6.60259 6.65647 6.86726 7.00078 7.09252 7.16858 7.47310 7.65696 8.15103 8.52975 8.53959 9.28987 10.70219 Molecular weight = 250.05amu Principal moments of inertia in cm(-1) A = 0.017862 B = 0.012441 C = 0.008476 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1567.225477 B = 2250.148127 C = 3302.625984 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.034 3.966 3 Si 1.069 2.931 4 H -0.279 1.279 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.595 4.595 8 H 0.073 0.927 9 C 0.062 3.938 10 H 0.071 0.929 11 C -0.045 4.045 12 C -0.097 4.097 13 C -0.121 4.121 14 C -0.133 4.133 15 C -0.090 4.090 16 C -0.104 4.104 17 S -0.126 6.126 18 C -0.046 4.046 19 H 0.121 0.879 20 C 0.540 3.460 21 O -0.521 6.521 22 O -0.499 6.499 23 H 0.271 0.729 24 H 0.122 0.878 25 H 0.116 0.884 26 H 0.120 0.880 27 H 0.115 0.885 28 H 0.400 0.600 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.281 -6.553 3.074 7.947 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.523 5.523 2 C -0.173 4.173 3 Si 0.896 3.104 4 H -0.204 1.204 5 H -0.210 1.210 6 H -0.210 1.210 7 C -0.631 4.631 8 H 0.091 0.909 9 C 0.042 3.958 10 H 0.089 0.911 11 C -0.050 4.050 12 C -0.117 4.117 13 C -0.141 4.141 14 C -0.153 4.153 15 C -0.114 4.114 16 C -0.217 4.217 17 S 0.116 5.884 18 C -0.176 4.176 19 H 0.139 0.861 20 C 0.382 3.618 21 O -0.410 6.410 22 O -0.308 6.308 23 H 0.083 0.917 24 H 0.140 0.860 25 H 0.134 0.866 26 H 0.138 0.862 27 H 0.134 0.866 28 H 0.257 0.743 Dipole moment (debyes) X Y Z Total from point charges 3.878 -5.647 2.905 7.441 hybrid contribution -0.650 -0.661 -0.147 0.939 sum 3.228 -6.308 2.758 7.603 Atomic orbital electron populations 1.70864 1.06900 1.30931 1.43625 1.25958 0.96351 1.02895 0.92136 0.83529 0.75091 0.74867 0.76948 1.20442 1.21043 1.20996 1.21911 0.95094 0.89348 1.56790 0.90879 1.18361 0.97757 0.93533 0.86107 0.91128 1.21579 0.93517 0.91286 0.98622 1.20847 0.98604 0.99519 0.92734 1.20860 0.99512 0.97654 0.96087 1.20813 0.96658 0.99099 0.98741 1.20198 0.99390 1.00267 0.91541 1.21995 1.00482 1.01454 0.97741 1.85578 1.31706 1.70363 1.00791 1.24055 0.97310 1.00641 0.95601 0.86131 1.21677 0.80348 0.74793 0.85007 1.90654 1.73735 1.50941 1.25682 1.84644 1.23639 1.72888 1.49644 0.91674 0.85999 0.86594 0.86233 0.86649 0.74338 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.69 13.63 55.43 0.76 -23.94 15 2 C 0.03 0.91 5.46 -17.82 -0.10 0.81 15 3 Si 1.07 24.24 29.90 -169.99 -5.08 19.16 15 4 H -0.28 -6.35 7.11 56.52 0.40 -5.94 15 5 H -0.28 -6.22 7.11 56.52 0.40 -5.82 15 6 H -0.28 -6.24 7.11 56.52 0.40 -5.83 15 7 C -0.59 -15.43 6.87 -34.44 -0.24 -15.67 15 8 H 0.07 1.94 6.63 -52.48 -0.35 1.59 15 9 C 0.06 1.46 2.39 -92.25 -0.22 1.24 15 10 H 0.07 1.77 6.24 -51.93 -0.32 1.45 15 11 C -0.04 -0.99 5.21 -103.79 -0.54 -1.53 15 12 C -0.10 -2.01 9.97 -39.27 -0.39 -2.40 15 13 C -0.12 -2.10 10.00 -39.75 -0.40 -2.50 15 14 C -0.13 -2.14 10.08 -39.63 -0.40 -2.54 15 15 C -0.09 -1.58 10.05 -39.44 -0.40 -1.97 15 16 C -0.10 -2.13 6.48 -39.13 -0.25 -2.38 15 17 S -0.13 -2.48 21.83 -107.50 -2.35 -4.83 15 18 C -0.05 -0.97 3.79 -27.29 -0.10 -1.07 15 19 H 0.12 2.28 8.14 -51.93 -0.42 1.85 15 20 C 0.54 11.44 5.95 36.01 0.21 11.65 15 21 O -0.52 -12.15 17.86 -18.75 -0.33 -12.48 15 22 O -0.50 -9.15 11.61 -39.26 -0.46 -9.60 15 23 H 0.27 7.40 6.10 -40.82 -0.25 7.15 15 24 H 0.12 2.64 7.70 -52.49 -0.40 2.24 15 25 H 0.12 1.68 8.06 -52.49 -0.42 1.26 15 26 H 0.12 1.51 8.06 -52.48 -0.42 1.08 15 27 H 0.12 1.74 8.06 -52.49 -0.42 1.31 15 28 H 0.40 5.31 9.10 45.56 0.41 5.72 15 LS Contribution 260.48 15.07 3.93 3.93 Total: -1.00 -30.31 260.48 -7.76 -38.06 By element: Atomic # 1 Polarization: 7.47 SS G_CDS: -1.40 Total: 6.08 kcal Atomic # 6 Polarization: -13.54 SS G_CDS: -2.82 Total: -16.37 kcal Atomic # 7 Polarization: -24.69 SS G_CDS: 0.76 Total: -23.94 kcal Atomic # 8 Polarization: -21.30 SS G_CDS: -0.79 Total: -22.09 kcal Atomic # 14 Polarization: 24.24 SS G_CDS: -5.08 Total: 19.16 kcal Atomic # 16 Polarization: -2.48 SS G_CDS: -2.35 Total: -4.83 kcal Total LS contribution 3.93 Total: 3.93 kcal Total: -30.31 -7.76 -38.06 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000039040158.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.596 kcal (2) G-P(sol) polarization free energy of solvation -30.305 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.901 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.759 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.064 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.660 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds