Wall clock time and date at job start Mon Mar 30 2020 06:31:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30754 * 1 3 3 Si 1.86801 * 120.00196 * 2 1 4 4 H 1.48506 * 109.46927 * 180.02562 * 3 2 1 5 5 H 1.48499 * 109.47021 * 299.99792 * 3 2 1 6 6 H 1.48501 * 109.47039 * 60.00209 * 3 2 1 7 7 C 1.39944 * 119.99967 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00393 * 180.02562 * 7 2 1 9 9 C 1.41786 * 119.99690 * 359.72083 * 7 2 1 10 10 N 1.31914 * 126.44517 * 359.97102 * 9 7 2 11 11 O 1.21276 * 110.11298 * 179.79774 * 10 9 7 12 12 C 1.34320 * 110.10579 * 0.46806 * 11 10 9 13 13 C 1.47806 * 126.42938 * 179.68916 * 12 11 10 14 14 C 1.39596 * 120.15258 * 0.02562 * 13 12 11 15 15 C 1.37915 * 119.86439 * 180.02562 * 14 13 12 16 16 C 1.38406 * 120.18093 * 0.02562 * 15 14 13 17 17 C 1.38278 * 120.30650 * 0.02562 * 16 15 14 18 18 C 1.38135 * 120.13231 * 359.67855 * 17 16 15 19 19 Cl 1.73605 * 120.09413 * 180.30117 * 18 17 16 20 20 N 1.31749 * 107.14173 * 359.70383 * 12 11 10 21 21 H 0.96995 * 119.99783 * 359.97438 * 1 2 3 22 22 H 1.07997 * 120.06087 * 0.02562 * 14 13 12 23 23 H 1.07999 * 119.90607 * 179.97438 * 15 14 13 24 24 H 1.08001 * 119.84550 * 179.97438 * 16 15 14 25 25 H 1.08004 * 119.93334 * 179.97438 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3075 0.0000 0.0000 3 14 2.2416 1.6177 0.0000 4 1 3.7016 1.3462 -0.0006 5 1 1.8829 2.3964 -1.2125 6 1 1.8829 2.3964 1.2125 7 6 2.0073 -1.2120 -0.0005 8 1 3.0873 -1.2120 -0.0001 9 6 1.2983 -2.4398 0.0049 10 7 -0.0125 -2.5878 0.0113 11 8 -0.2992 -3.7662 0.0106 12 6 0.8173 -4.5130 0.0140 13 6 0.8857 -5.9894 0.0208 14 6 -0.2877 -6.7457 0.0240 15 6 -0.2170 -8.1230 0.0309 16 6 1.0136 -8.7566 0.0353 17 6 2.1804 -8.0146 0.0333 18 6 2.1245 -6.6344 0.0202 19 17 3.5901 -5.7039 0.0098 20 7 1.8400 -3.6824 0.0103 21 1 -0.4849 0.8400 0.0004 22 1 -1.2488 -6.2532 0.0210 23 1 -1.1243 -8.7088 0.0338 24 1 1.0626 -9.8354 0.0412 25 1 3.1374 -8.5152 0.0372 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000071522123.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:31:11 Heat of formation + Delta-G solvation = 80.246969 kcal Electronic energy + Delta-G solvation = -15149.710250 eV Core-core repulsion = 12350.263981 eV Total energy + Delta-G solvation = -2799.446269 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 250.025 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -43.24186 -39.02046 -35.94337 -34.45830 -33.26776 -31.89815 -30.64129 -29.01504 -26.52149 -23.56756 -22.78903 -21.37996 -20.69197 -17.99246 -16.63254 -16.15934 -15.77355 -15.45832 -14.94400 -14.51020 -13.79866 -13.55147 -13.33325 -13.01403 -11.79746 -11.44570 -11.33435 -11.26687 -11.15504 -11.01381 -10.62412 -10.36158 -10.32507 -9.88050 -9.77876 -8.93564 -8.88131 -8.64167 -7.78361 -6.63530 -4.64258 0.96745 1.28878 2.54585 2.91660 3.03874 3.12044 3.18756 3.82202 3.98075 4.03104 4.13372 4.79813 4.92783 5.12292 5.33331 5.33933 5.55505 5.63188 5.94306 6.17232 6.38813 6.44019 6.55431 6.74824 6.93312 7.25807 7.70483 8.30880 8.49548 8.84710 10.27386 10.40228 Molecular weight = 250.02amu Principal moments of inertia in cm(-1) A = 0.040559 B = 0.006317 C = 0.005476 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 690.192313 B = 4431.411126 C = 5111.746060 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.774 5.774 2 C 0.070 3.930 3 Si 0.924 3.076 4 H -0.260 1.260 5 H -0.274 1.274 6 H -0.274 1.274 7 C -0.432 4.432 8 H 0.093 0.907 9 C 0.288 3.712 10 N -0.415 5.415 11 O 0.030 5.970 12 C 0.136 3.864 13 C 0.019 3.981 14 C -0.085 4.085 15 C -0.120 4.120 16 C -0.107 4.107 17 C -0.118 4.118 18 C -0.009 4.009 19 Cl -0.027 7.027 20 N -0.477 5.477 21 H 0.277 0.723 22 H 0.140 0.860 23 H 0.131 0.869 24 H 0.130 0.870 25 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.444 -13.789 0.054 13.865 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.403 5.403 2 C -0.151 4.151 3 Si 0.748 3.252 4 H -0.184 1.184 5 H -0.199 1.199 6 H -0.199 1.199 7 C -0.473 4.473 8 H 0.111 0.889 9 C 0.036 3.964 10 N -0.140 5.140 11 O -0.015 6.015 12 C -0.082 4.082 13 C 0.016 3.984 14 C -0.106 4.106 15 C -0.139 4.139 16 C -0.126 4.126 17 C -0.136 4.136 18 C -0.038 4.038 19 Cl 0.002 6.998 20 N -0.218 5.218 21 H 0.088 0.912 22 H 0.158 0.842 23 H 0.149 0.851 24 H 0.148 0.852 25 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 1.211 -12.849 0.057 12.906 hybrid contribution 0.393 0.788 0.000 0.880 sum 1.604 -12.061 0.057 12.167 Atomic orbital electron populations 1.69875 1.07164 1.28649 1.34605 1.25843 0.94982 1.01155 0.93152 0.86008 0.80511 0.80329 0.78372 1.18364 1.19913 1.19913 1.18463 0.94270 0.86085 1.48443 0.88915 1.22357 0.85888 0.91936 0.96198 1.75567 1.16303 0.90083 1.32061 1.85328 1.34038 1.13810 1.68327 1.25736 0.84398 0.93867 1.04227 1.17288 0.92564 0.86346 1.02240 1.21290 0.97591 0.93791 0.97890 1.21091 0.98108 0.94001 1.00658 1.21163 0.91858 0.99966 0.99589 1.20964 0.99645 0.91124 1.01902 1.21029 0.88264 0.92045 1.02431 1.98427 1.32629 1.72659 1.96076 1.72568 1.27862 1.00315 1.21044 0.91199 0.84231 0.85106 0.85183 0.84732 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -22.02 11.97 55.55 0.67 -21.35 15 2 C 0.07 1.89 5.49 -17.37 -0.10 1.79 15 3 Si 0.92 19.88 29.56 -169.99 -5.02 14.85 15 4 H -0.26 -5.47 7.11 56.52 0.40 -5.07 15 5 H -0.27 -5.75 7.11 56.52 0.40 -5.35 15 6 H -0.27 -5.75 7.11 56.52 0.40 -5.35 15 7 C -0.43 -12.45 9.52 -37.59 -0.36 -12.81 15 8 H 0.09 2.56 7.85 -52.49 -0.41 2.15 15 9 C 0.29 8.46 7.67 -157.67 -1.21 7.25 15 10 N -0.42 -12.24 10.46 30.29 0.32 -11.93 15 11 O 0.03 0.77 11.09 16.33 0.18 0.95 15 12 C 0.14 3.23 7.92 -13.82 -0.11 3.12 15 13 C 0.02 0.34 5.88 -104.94 -0.62 -0.27 15 14 C -0.09 -1.25 9.73 -39.19 -0.38 -1.63 15 15 C -0.12 -1.34 10.03 -39.64 -0.40 -1.74 15 16 C -0.11 -1.12 10.04 -39.50 -0.40 -1.51 15 17 C -0.12 -1.47 9.82 -39.60 -0.39 -1.86 15 18 C -0.01 -0.14 6.35 -39.08 -0.25 -0.39 15 19 Cl -0.03 -0.50 26.20 -51.86 -1.36 -1.86 15 20 N -0.48 -12.59 8.95 -11.40 -0.10 -12.70 15 21 H 0.28 7.12 8.29 -40.82 -0.34 6.78 15 22 H 0.14 1.91 7.94 -52.49 -0.42 1.50 15 23 H 0.13 1.04 8.06 -52.49 -0.42 0.62 15 24 H 0.13 0.93 8.06 -52.49 -0.42 0.50 15 25 H 0.13 1.36 8.06 -52.48 -0.42 0.94 15 LS Contribution 250.25 15.07 3.77 3.77 Total: -1.00 -32.61 250.25 -6.98 -39.60 By element: Atomic # 1 Polarization: -2.05 SS G_CDS: -1.23 Total: -3.28 kcal Atomic # 6 Polarization: -3.85 SS G_CDS: -4.20 Total: -8.05 kcal Atomic # 7 Polarization: -46.85 SS G_CDS: 0.88 Total: -45.97 kcal Atomic # 8 Polarization: 0.77 SS G_CDS: 0.18 Total: 0.95 kcal Atomic # 14 Polarization: 19.88 SS G_CDS: -5.02 Total: 14.85 kcal Atomic # 17 Polarization: -0.50 SS G_CDS: -1.36 Total: -1.86 kcal Total LS contribution 3.77 Total: 3.77 kcal Total: -32.61 -6.98 -39.60 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000071522123.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 119.843 kcal (2) G-P(sol) polarization free energy of solvation -32.613 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 87.230 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.983 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.596 kcal (6) G-S(sol) free energy of system = (1) + (5) 80.247 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds