Wall clock time and date at job start Mon Mar 30 2020 06:31:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30755 * 1 3 3 Si 1.86797 * 120.00007 * 2 1 4 4 H 1.48497 * 109.47137 * 270.00076 * 3 2 1 5 5 H 1.48504 * 109.47037 * 29.99715 * 3 2 1 6 6 H 1.48504 * 109.47148 * 149.99655 * 3 2 1 7 7 C 1.39950 * 120.00089 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99652 * 179.97438 * 7 2 1 9 9 C 1.41787 * 119.99671 * 0.02562 * 7 2 1 10 10 N 1.31917 * 126.44761 * 359.97362 * 9 7 2 11 11 O 1.21269 * 110.10494 * 179.97438 * 10 9 7 12 12 C 1.34315 * 110.11081 * 0.02562 * 11 10 9 13 13 C 1.47851 * 126.42931 * 179.97438 * 12 11 10 14 14 C 1.39590 * 120.13791 * 180.28145 * 13 12 11 15 15 C 1.37952 * 119.87694 * 180.25649 * 14 13 12 16 16 C 1.38356 * 120.16117 * 359.76232 * 15 14 13 17 17 C 1.38444 * 120.27351 * 359.97438 * 16 15 14 18 18 Cl 1.73609 * 119.93741 * 180.02562 * 17 16 15 19 19 C 1.38105 * 120.12085 * 359.97438 * 17 16 15 20 20 N 1.31728 * 107.14520 * 0.25853 * 12 11 10 21 21 H 0.96997 * 119.99912 * 0.02562 * 1 2 3 22 22 H 1.07988 * 120.05841 * 359.97438 * 14 13 12 23 23 H 1.08004 * 119.91477 * 179.74123 * 15 14 13 24 24 H 1.08000 * 119.85747 * 179.97438 * 16 15 14 25 25 H 1.08002 * 120.07767 * 180.02562 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3075 0.0000 0.0000 3 14 2.2415 1.6177 0.0000 4 1 2.4890 2.0464 -1.4000 5 1 1.4389 2.6527 0.7000 6 1 3.5391 1.4402 0.7001 7 6 2.0073 -1.2120 0.0005 8 1 3.0873 -1.2119 0.0001 9 6 1.2983 -2.4399 0.0005 10 7 -0.0125 -2.5880 0.0006 11 8 -0.2989 -3.7663 0.0000 12 6 0.8176 -4.5130 0.0002 13 6 0.8862 -5.9899 0.0002 14 6 2.1246 -6.6340 0.0063 15 6 2.1824 -8.0123 0.0010 16 6 1.0163 -8.7569 -0.0054 17 6 -0.2154 -8.1248 -0.0060 18 17 -1.6731 -9.0677 -0.0134 19 6 -0.2866 -6.7456 0.0004 20 7 1.8401 -3.6825 0.0065 21 1 -0.4850 0.8400 -0.0004 22 1 3.0358 -6.0544 0.0106 23 1 3.1402 -8.5113 0.0015 24 1 1.0672 -9.8357 -0.0100 25 1 -1.2479 -6.2532 0.0004 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000071522124.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:31:17 Heat of formation + Delta-G solvation = 72.335643 kcal Electronic energy + Delta-G solvation = -14838.246249 eV Core-core repulsion = 12038.456919 eV Total energy + Delta-G solvation = -2799.789330 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 250.025 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -43.34164 -39.11251 -36.47890 -34.55412 -33.32303 -31.94725 -30.71384 -29.12515 -26.59543 -23.69506 -22.83693 -21.45287 -20.76915 -18.10021 -16.66460 -16.23782 -15.78490 -15.55566 -15.06629 -14.65208 -13.85947 -13.62981 -13.50724 -13.05500 -11.83872 -11.63670 -11.58435 -11.36472 -11.34023 -11.05089 -10.87427 -10.48295 -10.44031 -10.21551 -9.79996 -9.21680 -8.95157 -8.76856 -7.88558 -6.69163 -4.71668 0.91282 1.22648 2.08205 2.81990 3.00513 3.08582 3.13693 3.77456 3.93151 3.97664 4.06406 4.75880 4.94262 5.18077 5.25728 5.27180 5.48404 5.60947 5.89077 6.09703 6.29504 6.46993 6.55932 6.68402 6.85905 7.19733 7.59052 8.22850 8.41183 8.77534 10.19573 10.33418 Molecular weight = 250.02amu Principal moments of inertia in cm(-1) A = 0.053326 B = 0.004726 C = 0.004348 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 524.944918 B = 5923.671248 C = 6438.764443 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.772 5.772 2 C 0.069 3.931 3 Si 0.926 3.074 4 H -0.269 1.269 5 H -0.277 1.277 6 H -0.261 1.261 7 C -0.433 4.433 8 H 0.094 0.906 9 C 0.291 3.709 10 N -0.415 5.415 11 O 0.032 5.968 12 C 0.143 3.857 13 C 0.027 3.973 14 C -0.075 4.075 15 C -0.110 4.110 16 C -0.108 4.108 17 C -0.036 4.036 18 Cl -0.073 7.073 19 C -0.088 4.088 20 N -0.501 5.501 21 H 0.279 0.721 22 H 0.143 0.857 23 H 0.137 0.863 24 H 0.133 0.867 25 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.090 -13.890 -0.017 13.933 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.400 5.400 2 C -0.152 4.152 3 Si 0.750 3.250 4 H -0.194 1.194 5 H -0.202 1.202 6 H -0.185 1.185 7 C -0.474 4.474 8 H 0.112 0.888 9 C 0.040 3.960 10 N -0.140 5.140 11 O -0.012 6.012 12 C -0.075 4.075 13 C 0.025 3.975 14 C -0.095 4.095 15 C -0.128 4.128 16 C -0.128 4.128 17 C -0.062 4.062 18 Cl -0.045 7.045 19 C -0.108 4.108 20 N -0.242 5.242 21 H 0.090 0.910 22 H 0.161 0.839 23 H 0.154 0.846 24 H 0.151 0.849 25 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges 0.569 -13.126 -0.005 13.138 hybrid contribution 0.128 0.635 -0.011 0.648 sum 0.697 -12.491 -0.016 12.510 Atomic orbital electron populations 1.69862 1.07203 1.28928 1.34054 1.25862 0.95014 1.01241 0.93091 0.86026 0.80025 0.79808 0.79156 1.19399 1.20175 1.18469 1.18443 0.94295 0.86059 1.48632 0.88832 1.22254 0.85931 0.91585 0.96202 1.75596 1.16131 0.90078 1.32214 1.85334 1.34044 1.13860 1.67993 1.25745 0.84268 0.93987 1.03523 1.17244 0.93427 0.85807 1.01051 1.21396 0.97550 0.94303 0.96281 1.21025 0.98093 0.93301 1.00374 1.21113 0.90591 1.00500 1.00568 1.20666 0.87676 0.91500 1.06396 1.98362 1.36533 1.72495 1.97066 1.21150 0.99206 0.91577 0.98911 1.72180 1.28667 1.00840 1.22546 0.91009 0.83884 0.84551 0.84910 0.83934 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -21.66 11.97 55.55 0.67 -21.00 15 2 C 0.07 1.85 5.49 -17.37 -0.10 1.75 15 3 Si 0.93 19.43 29.56 -169.99 -5.02 14.41 15 4 H -0.27 -5.52 7.11 56.52 0.40 -5.12 15 5 H -0.28 -5.65 7.11 56.52 0.40 -5.25 15 6 H -0.26 -5.33 7.11 56.52 0.40 -4.93 15 7 C -0.43 -12.24 9.52 -37.59 -0.36 -12.60 15 8 H 0.09 2.49 7.85 -52.48 -0.41 2.08 15 9 C 0.29 8.44 7.67 -157.67 -1.21 7.23 15 10 N -0.42 -12.11 10.46 30.29 0.32 -11.80 15 11 O 0.03 0.82 11.09 16.35 0.18 1.00 15 12 C 0.14 3.30 7.99 -13.81 -0.11 3.19 15 13 C 0.03 0.48 5.87 -104.98 -0.62 -0.14 15 14 C -0.08 -1.12 9.70 -39.18 -0.38 -1.50 15 15 C -0.11 -1.24 10.03 -39.64 -0.40 -1.64 15 16 C -0.11 -1.20 9.82 -39.46 -0.39 -1.59 15 17 C -0.04 -0.46 6.31 -39.55 -0.25 -0.71 15 18 Cl -0.07 -0.86 28.95 -51.86 -1.50 -2.36 15 19 C -0.09 -1.34 9.51 -39.15 -0.37 -1.72 15 20 N -0.50 -12.95 11.28 -11.40 -0.13 -13.08 15 21 H 0.28 7.08 8.29 -40.82 -0.34 6.74 15 22 H 0.14 2.15 7.87 -52.49 -0.41 1.74 15 23 H 0.14 1.11 8.06 -52.48 -0.42 0.68 15 24 H 0.13 1.12 8.06 -52.49 -0.42 0.70 15 25 H 0.14 2.16 7.94 -52.49 -0.42 1.74 15 LS Contribution 254.60 15.07 3.84 3.84 Total: -1.00 -31.26 254.60 -7.05 -38.31 By element: Atomic # 1 Polarization: -0.38 SS G_CDS: -1.22 Total: -1.60 kcal Atomic # 6 Polarization: -3.55 SS G_CDS: -4.18 Total: -7.72 kcal Atomic # 7 Polarization: -46.73 SS G_CDS: 0.85 Total: -45.87 kcal Atomic # 8 Polarization: 0.82 SS G_CDS: 0.18 Total: 1.00 kcal Atomic # 14 Polarization: 19.43 SS G_CDS: -5.02 Total: 14.41 kcal Atomic # 17 Polarization: -0.86 SS G_CDS: -1.50 Total: -2.36 kcal Total LS contribution 3.84 Total: 3.84 kcal Total: -31.26 -7.05 -38.31 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000071522124.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.649 kcal (2) G-P(sol) polarization free energy of solvation -31.262 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 79.387 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.051 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.314 kcal (6) G-S(sol) free energy of system = (1) + (5) 72.336 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds