Wall clock time and date at job start Mon Mar 30 2020 06:31:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30755 * 1 3 3 Si 1.86797 * 120.00007 * 2 1 4 4 H 1.48497 * 109.47137 * 270.00076 * 3 2 1 5 5 H 1.48504 * 109.47037 * 29.99715 * 3 2 1 6 6 H 1.48504 * 109.47148 * 149.99655 * 3 2 1 7 7 C 1.39950 * 120.00089 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99652 * 179.97438 * 7 2 1 9 9 C 1.41787 * 119.99671 * 0.02562 * 7 2 1 10 10 N 1.31917 * 126.44761 * 359.97362 * 9 7 2 11 11 O 1.21269 * 110.10494 * 179.97438 * 10 9 7 12 12 C 1.34315 * 110.11081 * 0.02562 * 11 10 9 13 13 C 1.47851 * 126.42931 * 179.97438 * 12 11 10 14 14 C 1.39590 * 120.13791 * 180.28145 * 13 12 11 15 15 C 1.37952 * 119.87694 * 180.25649 * 14 13 12 16 16 C 1.38356 * 120.16117 * 359.76232 * 15 14 13 17 17 C 1.38444 * 120.27351 * 359.97438 * 16 15 14 18 18 Cl 1.73609 * 119.93741 * 180.02562 * 17 16 15 19 19 C 1.38105 * 120.12085 * 359.97438 * 17 16 15 20 20 N 1.31728 * 107.14520 * 0.25853 * 12 11 10 21 21 H 0.96997 * 119.99912 * 0.02562 * 1 2 3 22 22 H 1.07988 * 120.05841 * 359.97438 * 14 13 12 23 23 H 1.08004 * 119.91477 * 179.74123 * 15 14 13 24 24 H 1.08000 * 119.85747 * 179.97438 * 16 15 14 25 25 H 1.08002 * 120.07767 * 180.02562 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3075 0.0000 0.0000 3 14 2.2415 1.6177 0.0000 4 1 2.4890 2.0464 -1.4000 5 1 1.4389 2.6527 0.7000 6 1 3.5391 1.4402 0.7001 7 6 2.0073 -1.2120 0.0005 8 1 3.0873 -1.2119 0.0001 9 6 1.2983 -2.4399 0.0005 10 7 -0.0125 -2.5880 0.0006 11 8 -0.2989 -3.7663 0.0000 12 6 0.8176 -4.5130 0.0002 13 6 0.8862 -5.9899 0.0002 14 6 2.1246 -6.6340 0.0063 15 6 2.1824 -8.0123 0.0010 16 6 1.0163 -8.7569 -0.0054 17 6 -0.2154 -8.1248 -0.0060 18 17 -1.6731 -9.0677 -0.0134 19 6 -0.2866 -6.7456 0.0004 20 7 1.8401 -3.6825 0.0065 21 1 -0.4850 0.8400 -0.0004 22 1 3.0358 -6.0544 0.0106 23 1 3.1402 -8.5113 0.0015 24 1 1.0672 -9.8357 -0.0100 25 1 -1.2479 -6.2532 0.0004 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000071522124.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:31:17 Heat of formation + Delta-G solvation = 51.514332 kcal Electronic energy + Delta-G solvation = -14839.149129 eV Core-core repulsion = 12038.456919 eV Total energy + Delta-G solvation = -2800.692210 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 250.025 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -45.34800 -40.24033 -37.49100 -36.56052 -35.21373 -33.52278 -31.84997 -30.77808 -28.68020 -25.15603 -24.33284 -23.06924 -22.43628 -19.74857 -18.25721 -18.24198 -17.58333 -16.79300 -16.44516 -16.19941 -15.36832 -14.82350 -14.69202 -14.59817 -13.34993 -13.17771 -13.14470 -12.79493 -12.77808 -12.64475 -12.27722 -12.26653 -12.00073 -11.90042 -11.46105 -11.24629 -10.64978 -9.90115 -9.52944 -8.68433 -6.85712 -0.35771 0.14113 1.05695 1.13672 1.36682 1.37276 1.54821 1.99732 2.17984 2.36180 2.65065 3.17754 3.34269 3.84711 4.05845 4.08995 4.34206 4.42945 4.45724 4.74928 4.91514 5.12870 5.17758 5.28458 5.36569 5.62503 5.69276 6.11838 6.36305 6.69932 8.22107 8.36268 Molecular weight = 250.02amu Principal moments of inertia in cm(-1) A = 0.053326 B = 0.004726 C = 0.004348 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 524.944918 B = 5923.671248 C = 6438.764443 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.812 5.812 2 C 0.021 3.979 3 Si 1.012 2.988 4 H -0.258 1.258 5 H -0.265 1.265 6 H -0.251 1.251 7 C -0.467 4.467 8 H 0.098 0.902 9 C 0.263 3.737 10 N -0.459 5.459 11 O 0.018 5.982 12 C 0.169 3.831 13 C -0.016 4.016 14 C -0.076 4.076 15 C -0.092 4.092 16 C -0.082 4.082 17 C -0.040 4.040 18 Cl -0.059 7.059 19 C -0.090 4.090 20 N -0.527 5.527 21 H 0.288 0.712 22 H 0.135 0.865 23 H 0.181 0.819 24 H 0.174 0.826 25 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.372 -15.839 -0.022 16.016 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.441 5.441 2 C -0.196 4.196 3 Si 0.830 3.170 4 H -0.183 1.183 5 H -0.190 1.190 6 H -0.174 1.174 7 C -0.508 4.508 8 H 0.116 0.884 9 C 0.012 3.988 10 N -0.188 5.188 11 O -0.023 6.023 12 C -0.050 4.050 13 C -0.018 4.018 14 C -0.096 4.096 15 C -0.110 4.110 16 C -0.101 4.101 17 C -0.067 4.067 18 Cl -0.030 7.030 19 C -0.110 4.110 20 N -0.267 5.267 21 H 0.098 0.902 22 H 0.153 0.847 23 H 0.199 0.801 24 H 0.191 0.809 25 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 1.845 -15.130 -0.010 15.242 hybrid contribution -0.308 0.913 -0.011 0.964 sum 1.537 -14.217 -0.022 14.300 Atomic orbital electron populations 1.69976 1.09230 1.30576 1.34285 1.27056 0.95910 1.05144 0.91540 0.84770 0.78581 0.73880 0.79747 1.18256 1.18961 1.17416 1.18910 0.94825 0.87061 1.49965 0.88362 1.22753 0.86470 0.92959 0.96614 1.75543 1.16632 0.91676 1.34933 1.85228 1.34745 1.13371 1.69005 1.26726 0.82791 0.96115 0.99372 1.17345 0.95720 0.82766 1.05972 1.21505 0.95969 0.96083 0.96068 1.21453 1.00219 0.91391 0.97898 1.21638 0.89296 1.02486 0.96648 1.20771 0.89218 0.90604 1.06103 1.98374 1.35982 1.71678 1.96968 1.21091 0.98085 0.92846 0.99014 1.72139 1.29444 1.00326 1.24775 0.90208 0.84667 0.80147 0.80868 0.84850 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -47.06 11.97 21.82 0.26 -46.80 15 2 C 0.02 1.14 5.49 85.27 0.47 1.61 15 3 Si 1.01 40.04 29.56 68.60 2.03 42.07 15 4 H -0.26 -9.71 7.11 99.48 0.71 -9.00 15 5 H -0.27 -9.91 7.11 99.48 0.71 -9.20 15 6 H -0.25 -9.42 7.11 99.48 0.71 -8.71 15 7 C -0.47 -27.43 9.52 23.56 0.22 -27.20 15 8 H 0.10 5.42 7.85 -2.91 -0.02 5.40 15 9 C 0.26 16.05 7.67 135.01 1.04 17.09 15 10 N -0.46 -28.33 10.46 -59.76 -0.63 -28.95 15 11 O 0.02 0.96 11.09 68.57 0.76 1.72 15 12 C 0.17 8.13 7.99 87.31 0.70 8.83 15 13 C -0.02 -0.55 5.87 -20.10 -0.12 -0.67 15 14 C -0.08 -2.15 9.70 22.53 0.22 -1.93 15 15 C -0.09 -1.68 10.03 22.23 0.22 -1.46 15 16 C -0.08 -1.42 9.82 22.35 0.22 -1.20 15 17 C -0.04 -0.94 6.31 22.29 0.14 -0.79 15 18 Cl -0.06 -1.23 28.95 -2.72 -0.08 -1.31 15 19 C -0.09 -2.71 9.51 22.55 0.21 -2.49 15 20 N -0.53 -28.57 11.28 -305.34 -3.44 -32.01 15 21 H 0.29 14.94 8.29 -92.71 -0.77 14.18 15 22 H 0.14 4.00 7.87 -2.92 -0.02 3.98 15 23 H 0.18 1.81 8.06 -2.91 -0.02 1.78 15 24 H 0.17 1.76 8.06 -2.91 -0.02 1.74 15 25 H 0.13 4.17 7.94 -2.91 -0.02 4.15 15 Total: -1.00 -72.66 254.60 3.46 -69.20 By element: Atomic # 1 Polarization: 3.07 SS G_CDS: 1.24 Total: 4.30 kcal Atomic # 6 Polarization: -11.55 SS G_CDS: 3.32 Total: -8.22 kcal Atomic # 7 Polarization: -103.96 SS G_CDS: -3.81 Total: -107.76 kcal Atomic # 8 Polarization: 0.96 SS G_CDS: 0.76 Total: 1.72 kcal Atomic # 14 Polarization: 40.04 SS G_CDS: 2.03 Total: 42.07 kcal Atomic # 17 Polarization: -1.23 SS G_CDS: -0.08 Total: -1.31 kcal Total: -72.66 3.46 -69.20 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000071522124.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.716 kcal (2) G-P(sol) polarization free energy of solvation -72.664 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.052 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.463 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.202 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.514 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds