Wall clock time and date at job start Mon Mar 30 2020 06:31:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86795 * 120.00139 * 2 1 4 4 H 1.48501 * 109.47088 * 270.27618 * 3 2 1 5 5 H 1.48495 * 109.47293 * 30.27820 * 3 2 1 6 6 H 1.48507 * 109.47015 * 150.27778 * 3 2 1 7 7 C 1.37885 * 119.99792 * 180.27823 * 2 1 3 8 8 H 1.08000 * 119.99535 * 359.72167 * 7 2 1 9 9 C 1.50694 * 119.99902 * 179.72330 * 7 2 1 10 10 C 1.50698 * 109.47166 * 179.97438 * 9 7 2 11 11 S 1.75844 * 125.23473 * 270.02533 * 10 9 7 12 12 C 1.75802 * 91.17672 * 179.97438 * 11 10 9 13 13 C 1.33025 * 109.97214 * 0.02562 * 12 11 10 14 14 C 1.34715 * 125.23089 * 89.71575 * 10 9 7 15 15 C 1.47969 * 122.79531 * 359.97438 * 14 10 9 16 16 C 1.34725 * 125.26753 * 129.71455 * 15 14 10 17 17 C 1.38140 * 114.67920 * 179.83406 * 16 15 14 18 18 C 1.33487 * 115.05595 * 0.46160 * 17 16 15 19 19 S 1.75862 * 109.77783 * 359.75197 * 18 17 16 20 20 H 0.97000 * 119.99468 * 359.71811 * 1 2 3 21 21 H 1.08998 * 109.47224 * 299.99557 * 9 7 2 22 22 H 1.09002 * 109.47054 * 60.00069 * 9 7 2 23 23 H 1.08003 * 125.01289 * 179.97438 * 12 11 10 24 24 H 1.07999 * 122.54837 * 179.97438 * 13 12 11 25 25 H 1.08002 * 122.66238 * 0.02562 * 16 15 14 26 26 H 1.08003 * 122.47160 * 180.21262 * 17 16 15 27 27 H 1.07997 * 125.11414 * 179.75491 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4909 2.0497 -1.4001 5 1 1.4497 2.6509 0.7059 6 1 3.5497 1.4383 0.6942 7 6 2.0046 -1.1941 -0.0058 8 1 1.4645 -2.1294 -0.0058 9 6 3.5115 -1.1941 -0.0121 10 6 4.0138 -2.6149 -0.0170 11 16 4.3574 -3.5745 1.4159 12 6 4.8384 -4.9458 0.4266 13 6 4.7259 -4.6377 -0.8626 14 6 4.2631 -3.3472 -1.1199 15 6 4.0659 -2.8249 -2.4903 16 6 4.9749 -2.8824 -3.4830 17 6 4.5588 -2.3297 -4.6787 18 6 3.3269 -1.8158 -4.6656 19 16 2.6112 -2.0262 -3.0731 20 1 -0.4849 0.8401 0.0041 21 1 3.8711 -0.6782 -0.9024 22 1 3.8785 -0.6825 0.8776 23 1 5.1762 -5.8976 0.8091 24 1 4.9702 -5.3351 -1.6501 25 1 5.9503 -3.3281 -3.3550 26 1 5.1857 -2.3110 -5.5580 27 1 2.8425 -1.3422 -5.5067 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000074077884.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:31:35 Heat of formation + Delta-G solvation = 58.661280 kcal Electronic energy + Delta-G solvation = -13448.881523 eV Core-core repulsion = 11196.836149 eV Total energy + Delta-G solvation = -2252.045374 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 250.018 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -38.19388 -36.36572 -33.34634 -31.14977 -29.34972 -26.69897 -24.05911 -22.73984 -21.48756 -19.45945 -17.99307 -16.87464 -16.44364 -16.22561 -14.87037 -14.31300 -14.15237 -13.15084 -12.94344 -12.71505 -12.32295 -12.07444 -11.97932 -11.93884 -11.40540 -11.28805 -10.66145 -10.47316 -10.18436 -10.10624 -9.88819 -9.48544 -8.64846 -8.54579 -7.93443 -7.76581 -7.44865 -6.15211 -4.14240 1.31838 1.75479 2.16093 2.31311 2.56621 2.74670 3.11597 3.25087 3.32369 3.34888 3.56808 4.35136 5.18823 5.30515 5.51920 5.54911 5.69084 5.95867 6.04853 6.14738 6.36727 6.56622 6.68176 6.81527 6.85365 6.93303 7.00704 7.22168 7.54215 8.38293 8.87880 9.44023 10.96776 Molecular weight = 250.02amu Principal moments of inertia in cm(-1) A = 0.016283 B = 0.012171 C = 0.007862 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1719.141625 B = 2299.984548 C = 3560.430223 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.082 3.918 3 Si 0.864 3.136 4 H -0.271 1.271 5 H -0.284 1.284 6 H -0.264 1.264 7 C -0.508 4.508 8 H 0.077 0.923 9 C 0.038 3.962 10 C -0.084 4.084 11 S 0.096 5.904 12 C -0.247 4.247 13 C -0.102 4.102 14 C -0.088 4.088 15 C -0.107 4.107 16 C -0.155 4.155 17 C -0.141 4.141 18 C -0.265 4.265 19 S 0.214 5.786 20 H 0.266 0.734 21 H 0.038 0.962 22 H 0.032 0.968 23 H 0.157 0.843 24 H 0.133 0.867 25 H 0.130 0.870 26 H 0.126 0.874 27 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.081 -5.868 -4.309 11.639 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.121 4.121 3 Si 0.691 3.309 4 H -0.197 1.197 5 H -0.210 1.210 6 H -0.189 1.189 7 C -0.547 4.547 8 H 0.096 0.904 9 C -0.001 4.001 10 C -0.204 4.204 11 S 0.361 5.639 12 C -0.382 4.382 13 C -0.134 4.134 14 C -0.100 4.100 15 C -0.228 4.228 16 C -0.187 4.187 17 C -0.173 4.173 18 C -0.402 4.402 19 S 0.485 5.515 20 H 0.076 0.924 21 H 0.056 0.944 22 H 0.050 0.950 23 H 0.175 0.825 24 H 0.150 0.850 25 H 0.147 0.853 26 H 0.144 0.856 27 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges 7.402 -5.120 -2.143 9.252 hybrid contribution 1.826 0.241 -2.181 2.854 sum 9.227 -4.879 -4.324 11.298 Atomic orbital electron populations 1.69876 1.06105 1.27084 1.49670 1.24850 0.94606 0.98593 0.94100 0.86998 0.80660 0.84182 0.79076 1.19686 1.21002 1.18883 1.20770 0.87305 0.94858 1.51791 0.90445 1.18540 0.97888 0.85616 0.98046 1.25198 0.99913 1.01734 0.93539 1.84126 1.64511 1.05032 1.10258 1.25184 1.12890 1.03284 0.96844 1.19932 1.01564 0.95720 0.96145 1.16854 1.08627 0.94177 0.90358 1.22625 0.98556 1.05733 0.95863 1.20149 1.00347 1.05675 0.92486 1.19838 0.96344 1.02591 0.98489 1.26067 1.01055 1.09689 1.03367 1.85747 1.14011 1.52528 0.99237 0.92423 0.94395 0.94982 0.82538 0.84965 0.85254 0.85602 0.82924 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.00 13.96 55.43 0.77 -25.23 15 2 C 0.08 2.25 5.47 -17.82 -0.10 2.15 15 3 Si 0.86 20.77 27.47 -169.99 -4.67 16.10 15 4 H -0.27 -6.43 7.11 56.52 0.40 -6.03 15 5 H -0.28 -6.78 7.11 56.52 0.40 -6.38 15 6 H -0.26 -6.13 6.54 56.52 0.37 -5.76 15 7 C -0.51 -13.61 8.35 -34.44 -0.29 -13.90 15 8 H 0.08 2.29 7.98 -52.49 -0.42 1.87 15 9 C 0.04 0.90 3.75 -29.04 -0.11 0.80 15 10 C -0.08 -1.77 5.74 -35.56 -0.20 -1.97 15 11 S 0.10 1.72 23.31 -107.50 -2.51 -0.79 15 12 C -0.25 -3.84 11.18 28.92 0.32 -3.51 15 13 C -0.10 -1.69 9.96 -40.93 -0.41 -2.10 15 14 C -0.09 -1.73 5.65 -106.69 -0.60 -2.33 15 15 C -0.11 -2.06 5.39 -36.84 -0.20 -2.26 15 16 C -0.16 -2.60 10.05 -40.86 -0.41 -3.01 15 17 C -0.14 -2.20 10.16 -41.28 -0.42 -2.62 15 18 C -0.27 -4.38 11.22 29.07 0.33 -4.05 15 19 S 0.21 4.31 20.97 -107.50 -2.25 2.06 15 20 H 0.27 7.31 8.31 -40.82 -0.34 6.97 15 21 H 0.04 0.91 6.63 -51.93 -0.34 0.56 15 22 H 0.03 0.76 7.20 -51.93 -0.37 0.38 15 23 H 0.16 1.91 8.06 -52.48 -0.42 1.49 15 24 H 0.13 1.89 8.06 -52.49 -0.42 1.46 15 25 H 0.13 1.89 8.06 -52.49 -0.42 1.47 15 26 H 0.13 1.59 8.06 -52.48 -0.42 1.17 15 27 H 0.15 2.13 8.06 -52.49 -0.42 1.70 15 LS Contribution 263.79 15.07 3.98 3.98 Total: -1.00 -28.60 263.79 -9.19 -37.78 By element: Atomic # 1 Polarization: 1.32 SS G_CDS: -2.42 Total: -1.09 kcal Atomic # 6 Polarization: -30.72 SS G_CDS: -2.09 Total: -32.80 kcal Atomic # 7 Polarization: -26.00 SS G_CDS: 0.77 Total: -25.23 kcal Atomic # 14 Polarization: 20.77 SS G_CDS: -4.67 Total: 16.10 kcal Atomic # 16 Polarization: 6.03 SS G_CDS: -4.76 Total: 1.27 kcal Total LS contribution 3.98 Total: 3.98 kcal Total: -28.60 -9.19 -37.78 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000074077884.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.443 kcal (2) G-P(sol) polarization free energy of solvation -28.596 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.847 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.186 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.782 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.661 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds