Wall clock time and date at job start Mon Mar 30 2020 06:42:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.50694 * 109.46872 * 2 1 4 4 S 1.70439 * 124.67173 * 270.02206 * 3 2 1 5 5 C 1.75447 * 92.57831 * 180.02562 * 4 3 2 6 6 C 1.50700 * 124.55629 * 179.97438 * 5 4 3 7 7 F 1.39898 * 109.47076 * 270.04325 * 6 5 4 8 8 F 1.39896 * 109.46819 * 30.04240 * 6 5 4 9 9 F 1.39900 * 109.46888 * 150.04511 * 6 5 4 10 10 C 1.32579 * 110.88653 * 0.02562 * 5 4 3 11 11 C 1.37495 * 124.66825 * 90.31412 * 3 2 1 12 12 C 1.41257 * 123.64732 * 359.97438 * 11 3 2 13 13 H 1.07995 * 119.99999 * 339.50059 * 12 11 3 14 14 C 1.39686 * 120.00195 * 159.49943 * 12 11 3 15 15 N 1.31056 * 120.00053 * 349.18606 * 14 12 11 16 16 Si 1.86801 * 120.00186 * 169.18963 * 14 12 11 17 17 H 1.48498 * 109.47323 * 89.99742 * 16 14 12 18 18 H 1.48500 * 109.47165 * 209.99850 * 16 14 12 19 19 H 1.48502 * 109.46916 * 329.99912 * 16 14 12 20 20 H 1.09002 * 109.46785 * 180.02562 * 1 2 3 21 21 H 1.08997 * 109.47221 * 299.99769 * 1 2 3 22 22 H 1.08998 * 109.46787 * 60.00169 * 1 2 3 23 23 H 1.09005 * 109.47016 * 240.00019 * 2 1 3 24 24 H 1.08998 * 109.46787 * 119.99830 * 2 1 3 25 25 H 1.07996 * 123.41237 * 179.97438 * 10 5 4 26 26 H 0.97001 * 120.00236 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 16 2.3550 2.3351 -1.4017 5 6 2.8514 3.7361 -0.4696 6 6 3.3132 5.0403 -1.0669 7 9 4.6992 5.0032 -1.2530 8 9 2.6823 5.2378 -2.2998 9 9 2.9868 6.0906 -0.2023 10 6 2.7668 3.4927 0.8309 11 6 2.2988 2.1561 1.1308 12 6 2.1312 1.6618 2.4434 13 1 1.4851 0.8153 2.6232 14 6 2.8010 2.2678 3.5089 15 7 3.7414 3.1501 3.2749 16 14 2.3564 1.8208 5.2673 17 1 3.1939 0.6790 5.7147 18 1 2.5989 2.9889 6.1515 19 1 0.9228 1.4389 5.3335 20 1 -0.3633 -1.0277 0.0005 21 1 -0.3633 0.5138 0.8900 22 1 -0.3633 0.5138 -0.8900 23 1 1.8934 -0.5139 -0.8900 24 1 1.8933 -0.5138 0.8900 25 1 3.0242 4.2171 1.5895 26 1 4.2063 3.5713 4.0148 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000077096238.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:42:03 Heat of formation + Delta-G solvation = -149.518026 kcal Electronic energy + Delta-G solvation = -16224.027489 eV Core-core repulsion = 12978.345171 eV Total energy + Delta-G solvation = -3245.682318 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 250.033 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -49.50936 -47.05301 -46.99033 -36.86883 -33.15183 -32.89883 -29.11408 -26.11304 -24.92491 -22.00670 -20.92163 -19.28562 -18.02187 -17.86815 -16.72026 -16.15064 -15.56076 -14.60514 -13.96455 -13.86640 -13.47579 -13.46201 -13.28295 -13.19511 -13.18791 -12.82793 -11.97657 -11.97141 -11.58234 -11.37242 -11.25244 -10.94645 -10.69454 -10.48906 -10.23031 -9.92477 -9.52751 -9.20953 -7.66589 -7.20936 -6.87040 -4.43240 2.08003 2.62176 2.91726 3.02211 3.06715 3.36849 3.57174 3.80766 3.89962 4.57912 4.93549 5.02028 5.18440 5.89423 5.94476 6.23225 6.48795 6.57291 6.81358 6.89514 6.99399 7.03169 7.14985 7.30281 7.77187 8.25680 8.56766 8.76594 10.10215 Molecular weight = 250.03amu Principal moments of inertia in cm(-1) A = 0.020466 B = 0.009867 C = 0.007134 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1367.766397 B = 2837.153532 C = 3924.083701 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.011 4.011 3 C -0.365 4.365 4 S 0.079 5.921 5 C -0.337 4.337 6 C 0.542 3.458 7 F -0.182 7.182 8 F -0.185 7.185 9 F -0.180 7.180 10 C -0.012 4.012 11 C 0.084 3.916 12 C -0.431 4.431 13 H 0.084 0.916 14 C 0.071 3.929 15 N -0.812 5.812 16 Si 0.916 3.084 17 H -0.269 1.269 18 H -0.276 1.276 19 H -0.261 1.261 20 H 0.039 0.961 21 H 0.055 0.945 22 H 0.045 0.955 23 H 0.043 0.957 24 H 0.067 0.933 25 H 0.157 0.843 26 H 0.283 0.717 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.719 0.417 -3.204 3.660 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.051 4.051 3 C -0.483 4.483 4 S 0.342 5.658 5 C -0.453 4.453 6 C 0.486 3.514 7 F -0.164 7.164 8 F -0.166 7.166 9 F -0.161 7.161 10 C -0.048 4.048 11 C 0.074 3.926 12 C -0.464 4.464 13 H 0.102 0.898 14 C -0.145 4.145 15 N -0.439 5.439 16 Si 0.741 3.259 17 H -0.194 1.194 18 H -0.201 1.201 19 H -0.185 1.185 20 H 0.058 0.942 21 H 0.074 0.926 22 H 0.064 0.936 23 H 0.062 0.938 24 H 0.085 0.915 25 H 0.174 0.826 26 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -1.647 0.294 -4.648 4.940 hybrid contribution 0.170 0.458 2.340 2.391 sum -1.477 0.752 -2.308 2.841 Atomic orbital electron populations 1.21784 0.96993 0.99545 1.01691 1.19399 0.93903 0.91398 1.00372 1.23210 1.29125 1.01298 0.94708 1.81774 1.70017 1.03747 1.10224 1.24006 1.22868 0.98275 1.00142 1.17560 0.74647 0.84104 0.75100 1.93173 1.31210 1.96766 1.95215 1.93139 1.82339 1.95877 1.45281 1.93150 1.92497 1.60322 1.70158 1.21885 0.91928 0.98174 0.92807 1.17631 0.92781 0.88918 0.93290 1.19098 1.23988 1.13539 0.89805 0.89837 1.25945 0.93087 0.93498 1.01992 1.69762 1.17291 1.22303 1.34568 0.86163 0.80144 0.78888 0.80711 1.19425 1.20099 1.18485 0.94182 0.92575 0.93614 0.93829 0.91495 0.82622 0.90623 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.50 9.90 37.16 0.37 -2.13 15 2 C -0.01 -0.22 5.98 -27.88 -0.17 -0.39 15 3 C -0.37 -8.41 5.64 -34.58 -0.20 -8.60 15 4 S 0.08 1.70 22.62 -107.50 -2.43 -0.73 15 5 C -0.34 -7.65 5.88 -36.21 -0.21 -7.87 15 6 C 0.54 11.11 3.51 36.01 0.13 11.23 15 7 F -0.18 -3.70 17.30 2.25 0.04 -3.66 15 8 F -0.18 -3.56 17.02 2.25 0.04 -3.52 15 9 F -0.18 -3.62 16.89 2.25 0.04 -3.59 15 10 C -0.01 -0.30 8.61 -38.91 -0.33 -0.64 15 11 C 0.08 2.11 5.68 -106.45 -0.60 1.50 15 12 C -0.43 -10.76 8.65 -37.89 -0.33 -11.09 15 13 H 0.08 2.01 7.27 -52.49 -0.38 1.62 15 14 C 0.07 1.71 5.38 -17.34 -0.09 1.61 15 15 N -0.81 -20.05 10.73 55.54 0.60 -19.46 15 16 Si 0.92 18.03 29.57 -169.99 -5.03 13.01 15 17 H -0.27 -5.26 7.11 56.52 0.40 -4.85 15 18 H -0.28 -5.35 7.11 56.52 0.40 -4.95 15 19 H -0.26 -5.09 7.11 56.52 0.40 -4.68 15 20 H 0.04 0.59 8.14 -51.93 -0.42 0.17 15 21 H 0.06 1.04 8.14 -51.93 -0.42 0.62 15 22 H 0.04 0.78 8.14 -51.93 -0.42 0.36 15 23 H 0.04 0.80 8.14 -51.93 -0.42 0.38 15 24 H 0.07 1.36 7.36 -51.93 -0.38 0.97 15 25 H 0.16 3.95 6.22 -52.49 -0.33 3.62 15 26 H 0.28 6.41 8.30 -40.82 -0.34 6.07 15 LS Contribution 256.38 15.07 3.86 3.86 Total: -1.00 -24.88 256.38 -6.24 -31.13 By element: Atomic # 1 Polarization: 1.25 SS G_CDS: -1.92 Total: -0.67 kcal Atomic # 6 Polarization: -14.93 SS G_CDS: -1.44 Total: -16.37 kcal Atomic # 7 Polarization: -20.05 SS G_CDS: 0.60 Total: -19.46 kcal Atomic # 9 Polarization: -10.88 SS G_CDS: 0.12 Total: -10.77 kcal Atomic # 14 Polarization: 18.03 SS G_CDS: -5.03 Total: 13.01 kcal Atomic # 16 Polarization: 1.70 SS G_CDS: -2.43 Total: -0.73 kcal Total LS contribution 3.86 Total: 3.86 kcal Total: -24.88 -6.24 -31.13 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000077096238.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -118.393 kcal (2) G-P(sol) polarization free energy of solvation -24.885 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -143.278 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.240 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.125 kcal (6) G-S(sol) free energy of system = (1) + (5) -149.518 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds