Wall clock time and date at job start Mon Mar 30 2020 06:42:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.50694 * 109.46872 * 2 1 4 4 S 1.70439 * 124.67173 * 270.02206 * 3 2 1 5 5 C 1.75447 * 92.57831 * 180.02562 * 4 3 2 6 6 C 1.50700 * 124.55629 * 179.97438 * 5 4 3 7 7 F 1.39898 * 109.47076 * 270.04325 * 6 5 4 8 8 F 1.39896 * 109.46819 * 30.04240 * 6 5 4 9 9 F 1.39900 * 109.46888 * 150.04511 * 6 5 4 10 10 C 1.32579 * 110.88653 * 0.02562 * 5 4 3 11 11 C 1.37495 * 124.66825 * 90.31412 * 3 2 1 12 12 C 1.41257 * 123.64732 * 359.97438 * 11 3 2 13 13 H 1.07995 * 119.99999 * 339.50059 * 12 11 3 14 14 C 1.39686 * 120.00195 * 159.49943 * 12 11 3 15 15 N 1.31056 * 120.00053 * 349.18606 * 14 12 11 16 16 Si 1.86801 * 120.00186 * 169.18963 * 14 12 11 17 17 H 1.48498 * 109.47323 * 89.99742 * 16 14 12 18 18 H 1.48500 * 109.47165 * 209.99850 * 16 14 12 19 19 H 1.48502 * 109.46916 * 329.99912 * 16 14 12 20 20 H 1.09002 * 109.46785 * 180.02562 * 1 2 3 21 21 H 1.08997 * 109.47221 * 299.99769 * 1 2 3 22 22 H 1.08998 * 109.46787 * 60.00169 * 1 2 3 23 23 H 1.09005 * 109.47016 * 240.00019 * 2 1 3 24 24 H 1.08998 * 109.46787 * 119.99830 * 2 1 3 25 25 H 1.07996 * 123.41237 * 179.97438 * 10 5 4 26 26 H 0.97001 * 120.00236 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 16 2.3550 2.3351 -1.4017 5 6 2.8514 3.7361 -0.4696 6 6 3.3132 5.0403 -1.0669 7 9 4.6992 5.0032 -1.2530 8 9 2.6823 5.2378 -2.2998 9 9 2.9868 6.0906 -0.2023 10 6 2.7668 3.4927 0.8309 11 6 2.2988 2.1561 1.1308 12 6 2.1312 1.6618 2.4434 13 1 1.4851 0.8153 2.6232 14 6 2.8010 2.2678 3.5089 15 7 3.7414 3.1501 3.2749 16 14 2.3564 1.8208 5.2673 17 1 3.1939 0.6790 5.7147 18 1 2.5989 2.9889 6.1515 19 1 0.9228 1.4389 5.3335 20 1 -0.3633 -1.0277 0.0005 21 1 -0.3633 0.5138 0.8900 22 1 -0.3633 0.5138 -0.8900 23 1 1.8934 -0.5139 -0.8900 24 1 1.8933 -0.5138 0.8900 25 1 3.0242 4.2171 1.5895 26 1 4.2063 3.5713 4.0148 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000077096238.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:42:03 Heat of formation + Delta-G solvation = -160.382670 kcal Electronic energy + Delta-G solvation = -16224.498615 eV Core-core repulsion = 12978.345171 eV Total energy + Delta-G solvation = -3246.153444 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 250.033 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -51.15211 -48.67660 -48.63742 -38.66059 -34.91505 -34.55307 -30.82930 -27.90193 -26.58797 -23.67226 -22.64409 -21.05788 -19.67883 -19.51351 -18.45207 -17.96118 -17.28197 -16.29099 -15.60145 -15.49321 -15.12975 -15.10085 -14.87124 -14.82689 -14.80817 -14.44482 -13.71355 -13.66915 -13.26338 -13.01164 -12.88150 -12.58229 -12.34391 -12.08007 -11.89603 -11.59393 -11.25297 -10.98481 -9.46204 -8.99827 -8.63661 -6.27946 0.25690 0.85527 1.33006 1.41352 1.54130 1.63448 1.82356 2.03402 2.24441 2.85532 3.25243 3.27991 3.44401 4.35559 4.45109 4.72652 4.86401 5.01096 5.13421 5.18158 5.28456 5.36512 5.50440 5.57067 5.95175 6.39731 6.74277 6.93480 8.35471 Molecular weight = 250.03amu Principal moments of inertia in cm(-1) A = 0.020466 B = 0.009867 C = 0.007134 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1367.766397 B = 2837.153532 C = 3924.083701 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.015 4.015 3 C -0.369 4.369 4 S 0.126 5.874 5 C -0.346 4.346 6 C 0.549 3.451 7 F -0.180 7.180 8 F -0.174 7.174 9 F -0.178 7.178 10 C -0.037 4.037 11 C 0.050 3.950 12 C -0.460 4.460 13 H 0.083 0.917 14 C 0.032 3.968 15 N -0.843 5.843 16 Si 0.984 3.016 17 H -0.264 1.264 18 H -0.271 1.271 19 H -0.258 1.258 20 H 0.070 0.930 21 H 0.039 0.961 22 H 0.049 0.951 23 H 0.061 0.939 24 H 0.058 0.942 25 H 0.141 0.859 26 H 0.288 0.712 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.304 -0.336 -3.597 4.284 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.055 4.055 3 C -0.488 4.488 4 S 0.390 5.610 5 C -0.462 4.462 6 C 0.493 3.507 7 F -0.161 7.161 8 F -0.156 7.156 9 F -0.160 7.160 10 C -0.073 4.073 11 C 0.040 3.960 12 C -0.494 4.494 13 H 0.102 0.898 14 C -0.182 4.182 15 N -0.472 5.472 16 Si 0.806 3.194 17 H -0.189 1.189 18 H -0.196 1.196 19 H -0.182 1.182 20 H 0.089 0.911 21 H 0.058 0.942 22 H 0.068 0.932 23 H 0.080 0.920 24 H 0.077 0.923 25 H 0.159 0.841 26 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -2.234 -0.460 -5.068 5.557 hybrid contribution 0.352 0.664 2.314 2.433 sum -1.881 0.205 -2.754 3.342 Atomic orbital electron populations 1.21694 0.95007 1.01436 1.01072 1.19534 0.95577 0.89543 1.00836 1.23817 1.27149 1.02720 0.95070 1.81502 1.68627 1.02246 1.08625 1.24316 1.22126 0.99745 1.00045 1.17279 0.74707 0.83385 0.75327 1.93176 1.31025 1.96726 1.95205 1.93158 1.82155 1.95761 1.44489 1.93154 1.92492 1.60065 1.70243 1.21768 0.94015 0.98185 0.93323 1.17967 0.94165 0.89597 0.94294 1.19302 1.25054 1.14391 0.90604 0.89844 1.26733 0.92583 0.93194 1.05642 1.69828 1.18187 1.23320 1.35819 0.85144 0.79826 0.78684 0.75767 1.18922 1.19552 1.18162 0.91080 0.94176 0.93199 0.92043 0.92297 0.84122 0.90175 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.43 9.90 71.98 0.71 -3.72 15 2 C -0.02 -0.58 5.98 29.85 0.18 -0.40 15 3 C -0.37 -16.70 5.64 25.51 0.14 -16.56 15 4 S 0.13 5.19 22.62 -56.49 -1.28 3.91 15 5 C -0.35 -15.56 5.88 24.53 0.14 -15.41 15 6 C 0.55 21.99 3.51 71.24 0.25 22.24 15 7 F -0.18 -7.12 17.30 44.97 0.78 -6.34 15 8 F -0.17 -6.39 17.02 44.97 0.77 -5.63 15 9 F -0.18 -7.10 16.89 44.97 0.76 -6.34 15 10 C -0.04 -1.84 8.61 22.78 0.20 -1.64 15 11 C 0.05 2.52 5.68 -21.05 -0.12 2.40 15 12 C -0.46 -23.31 8.65 23.36 0.20 -23.10 15 13 H 0.08 4.06 7.27 -2.91 -0.02 4.04 15 14 C 0.03 1.53 5.38 85.16 0.46 1.99 15 15 N -0.84 -42.48 10.73 21.79 0.23 -42.24 15 16 Si 0.98 37.00 29.57 68.60 2.03 39.03 15 17 H -0.26 -9.65 7.11 99.48 0.71 -8.95 15 18 H -0.27 -9.84 7.11 99.48 0.71 -9.13 15 19 H -0.26 -9.45 7.11 99.48 0.71 -8.74 15 20 H 0.07 1.90 8.14 -2.39 -0.02 1.88 15 21 H 0.04 1.43 8.14 -2.39 -0.02 1.41 15 22 H 0.05 1.58 8.14 -2.39 -0.02 1.56 15 23 H 0.06 2.10 8.14 -2.38 -0.02 2.08 15 24 H 0.06 2.34 7.36 -2.39 -0.02 2.32 15 25 H 0.14 7.39 6.22 -2.91 -0.02 7.37 15 26 H 0.29 13.25 8.30 -92.71 -0.77 12.48 15 Total: -1.00 -52.17 256.38 6.67 -45.50 By element: Atomic # 1 Polarization: 5.10 SS G_CDS: 1.22 Total: 6.32 kcal Atomic # 6 Polarization: -36.38 SS G_CDS: 2.17 Total: -34.21 kcal Atomic # 7 Polarization: -42.48 SS G_CDS: 0.23 Total: -42.24 kcal Atomic # 9 Polarization: -20.61 SS G_CDS: 2.30 Total: -18.31 kcal Atomic # 14 Polarization: 37.00 SS G_CDS: 2.03 Total: 39.03 kcal Atomic # 16 Polarization: 5.19 SS G_CDS: -1.28 Total: 3.91 kcal Total: -52.17 6.67 -45.50 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000077096238.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -114.884 kcal (2) G-P(sol) polarization free energy of solvation -52.169 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -167.053 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.670 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.499 kcal (6) G-S(sol) free energy of system = (1) + (5) -160.383 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds