Wall clock time and date at job start Mon Mar 30 2020 06:31:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13595 * 1 3 3 C 1.43201 * 179.97438 * 2 1 4 4 C 1.39686 * 120.20006 * 0.99764 * 3 2 1 5 5 C 1.37819 * 119.94290 * 179.71588 * 4 3 2 6 6 C 1.38739 * 120.33690 * 0.56891 * 5 4 3 7 7 Cl 1.73602 * 119.79946 * 179.74112 * 6 5 4 8 8 C 1.38143 * 120.39844 * 359.70773 * 6 5 4 9 9 C 1.38907 * 120.05056 * 0.02562 * 8 6 5 10 10 N 1.38982 * 120.17258 * 179.97438 * 9 8 6 11 11 C 1.34777 * 119.99728 * 24.87726 * 10 9 8 12 12 O 1.21739 * 119.99977 * 5.52305 * 11 10 9 13 13 C 1.46143 * 119.99529 * 185.52693 * 11 10 9 14 14 H 1.07994 * 120.00521 * 5.01533 * 13 11 10 15 15 C 1.40138 * 119.99502 * 185.01264 * 13 11 10 16 16 N 1.30634 * 120.00250 * 354.98476 * 15 13 11 17 17 Si 1.86806 * 119.99731 * 174.98227 * 15 13 11 18 18 H 1.48491 * 109.47164 * 95.00468 * 17 15 13 19 19 H 1.48498 * 109.46719 * 215.00428 * 17 15 13 20 20 H 1.48499 * 109.47163 * 334.99908 * 17 15 13 21 21 H 1.08007 * 120.02866 * 0.02562 * 4 3 2 22 22 H 1.07998 * 119.82949 * 180.26119 * 5 4 3 23 23 H 1.07995 * 119.97313 * 180.02562 * 8 6 5 24 24 H 0.97006 * 120.00145 * 204.87767 * 10 9 8 25 25 H 0.96998 * 119.99486 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1359 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2711 -1.2061 -0.0210 5 6 4.6493 -1.1992 -0.0268 6 6 5.3442 0.0013 0.0000 7 17 7.0802 -0.0064 -0.0009 8 6 4.6630 1.2028 0.0267 9 6 3.2739 1.2150 0.0274 10 7 2.5860 2.4223 0.0548 11 6 3.1725 3.5428 -0.4113 12 8 4.2636 3.4807 -0.9477 13 6 2.4985 4.8321 -0.2726 14 1 1.5696 4.8999 0.2741 15 6 3.0577 5.9805 -0.8491 16 7 4.2283 5.9182 -1.4255 17 14 2.1290 7.6004 -0.7933 18 1 2.5881 8.3942 0.3746 19 1 2.3870 8.3620 -2.0418 20 1 0.6737 7.3326 -0.6687 21 1 2.7353 -2.1437 -0.0378 22 1 5.1911 -2.1333 -0.0474 23 1 5.2108 2.1333 0.0471 24 1 1.6838 2.4586 0.4094 25 1 4.6151 6.7131 -1.8248 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000083350186.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:31:24 Heat of formation + Delta-G solvation = 6.216041 kcal Electronic energy + Delta-G solvation = -14968.958536 eV Core-core repulsion = 12166.302045 eV Total energy + Delta-G solvation = -2802.656491 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 250.025 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.81598 -37.43350 -36.52727 -35.78394 -33.76451 -32.68812 -30.76743 -29.49633 -26.52342 -23.51142 -22.78822 -20.17112 -18.77039 -17.68464 -16.76242 -15.83813 -15.16339 -14.91787 -14.33503 -13.99070 -13.65418 -13.27405 -12.91104 -12.78963 -12.72871 -12.52821 -11.78568 -11.51977 -11.42953 -11.24907 -11.03776 -10.83594 -10.69084 -10.45538 -9.76145 -9.07542 -8.56903 -7.96906 -7.46087 -6.53530 -5.01396 0.93573 1.62855 2.34288 2.88290 2.98343 3.07067 3.10854 3.14183 3.82965 3.96235 4.16840 4.23382 4.32349 4.99730 5.31189 5.39352 5.56363 5.67936 5.98903 6.23519 6.43648 6.58232 6.88378 7.13037 7.39002 7.63301 7.73430 7.92012 8.66383 8.86430 10.09737 10.35251 Molecular weight = 250.02amu Principal moments of inertia in cm(-1) A = 0.021449 B = 0.007118 C = 0.005414 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1305.113263 B = 3932.855416 C = 5170.957273 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.435 5.435 2 C 0.267 3.733 3 C -0.109 4.109 4 C -0.033 4.033 5 C -0.168 4.168 6 C 0.019 3.981 7 Cl -0.071 7.071 8 C -0.138 4.138 9 C 0.261 3.739 10 N -0.683 5.683 11 C 0.535 3.465 12 O -0.549 6.549 13 C -0.531 4.531 14 H 0.075 0.925 15 C 0.087 3.913 16 N -0.751 5.751 17 Si 0.915 3.085 18 H -0.269 1.269 19 H -0.275 1.275 20 H -0.262 1.262 21 H 0.135 0.865 22 H 0.134 0.866 23 H 0.174 0.826 24 H 0.398 0.602 25 H 0.276 0.724 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.665 -9.297 3.306 10.006 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.111 5.111 2 C -0.047 4.047 3 C -0.117 4.117 4 C -0.054 4.054 5 C -0.188 4.188 6 C -0.010 4.010 7 Cl -0.042 7.042 8 C -0.159 4.159 9 C 0.154 3.846 10 N -0.322 5.322 11 C 0.343 3.657 12 O -0.431 6.431 13 C -0.566 4.566 14 H 0.093 0.907 15 C -0.136 4.136 16 N -0.378 5.378 17 Si 0.739 3.261 18 H -0.194 1.194 19 H -0.200 1.200 20 H -0.186 1.186 21 H 0.153 0.847 22 H 0.152 0.848 23 H 0.191 0.809 24 H 0.233 0.767 25 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 0.961 -9.047 2.810 9.522 hybrid contribution -0.329 0.767 0.121 0.844 sum 0.632 -8.280 2.931 8.806 Atomic orbital electron populations 1.81204 1.11927 1.07324 1.10692 1.25525 0.92465 0.93667 0.93034 1.15846 0.84355 0.93846 1.17688 1.20687 0.93132 0.95841 0.95766 1.20659 0.93425 0.96763 1.07955 1.20985 0.84389 0.94737 1.00871 1.98358 1.10270 1.98950 1.96639 1.21554 0.92529 0.99117 1.02705 1.17788 0.91108 0.85356 0.90371 1.44400 1.18493 1.06573 1.62722 1.18495 0.86050 0.82450 0.78658 1.90609 1.21369 1.84958 1.46200 1.20870 1.09376 0.90310 1.36069 0.90665 1.25755 0.94338 1.00431 0.93077 1.69958 1.13462 1.29990 1.24399 0.86215 0.80561 0.80818 0.78536 1.19446 1.20044 1.18599 0.84725 0.84818 0.80929 0.76747 0.91359 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.43 -7.67 18.54 41.83 0.78 -6.90 15 2 C 0.27 4.38 14.26 -22.47 -0.32 4.05 15 3 C -0.11 -1.71 5.76 -106.58 -0.61 -2.33 15 4 C -0.03 -0.42 9.75 -39.19 -0.38 -0.80 15 5 C -0.17 -2.14 9.80 -39.55 -0.39 -2.53 15 6 C 0.02 0.29 6.32 -39.43 -0.25 0.04 15 7 Cl -0.07 -1.04 28.94 -51.86 -1.50 -2.54 15 8 C -0.14 -2.61 8.47 -39.37 -0.33 -2.95 15 9 C 0.26 4.91 6.43 -83.52 -0.54 4.37 15 10 N -0.68 -14.39 5.13 -11.01 -0.06 -14.45 15 11 C 0.53 13.80 7.53 -13.09 -0.10 13.70 15 12 O -0.55 -15.68 12.18 5.15 0.06 -15.62 15 13 C -0.53 -13.75 9.53 -35.70 -0.34 -14.09 15 14 H 0.08 1.79 7.85 -52.49 -0.41 1.38 15 15 C 0.09 2.21 5.50 -17.35 -0.10 2.12 15 16 N -0.75 -20.56 11.84 55.56 0.66 -19.90 15 17 Si 0.91 18.71 29.56 -169.99 -5.03 13.68 15 18 H -0.27 -5.38 7.11 56.52 0.40 -4.98 15 19 H -0.28 -5.54 7.11 56.52 0.40 -5.14 15 20 H -0.26 -5.25 7.11 56.52 0.40 -4.85 15 21 H 0.13 1.28 8.06 -52.48 -0.42 0.86 15 22 H 0.13 1.33 8.06 -52.49 -0.42 0.91 15 23 H 0.17 3.86 5.77 -52.49 -0.30 3.56 15 24 H 0.40 7.62 7.87 -40.82 -0.32 7.30 15 25 H 0.28 6.83 8.29 -40.82 -0.34 6.49 15 LS Contribution 256.78 15.07 3.87 3.87 Total: -1.00 -29.16 256.78 -5.59 -34.75 By element: Atomic # 1 Polarization: 6.53 SS G_CDS: -1.02 Total: 5.52 kcal Atomic # 6 Polarization: 4.95 SS G_CDS: -3.36 Total: 1.59 kcal Atomic # 7 Polarization: -42.63 SS G_CDS: 1.38 Total: -41.25 kcal Atomic # 8 Polarization: -15.68 SS G_CDS: 0.06 Total: -15.62 kcal Atomic # 14 Polarization: 18.71 SS G_CDS: -5.03 Total: 13.68 kcal Atomic # 17 Polarization: -1.04 SS G_CDS: -1.50 Total: -2.54 kcal Total LS contribution 3.87 Total: 3.87 kcal Total: -29.16 -5.59 -34.75 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000083350186.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.966 kcal (2) G-P(sol) polarization free energy of solvation -29.159 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.807 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.591 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.750 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.216 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds